RNA id: XM_021557384.2


Basic Information

Item Value
RNA id XM_021557384.2
length 1795
RNA type mRNA
GC content 0.45
exon number 8
gene id rrp36
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29168401 ~ 29172521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGCCCCCCGTTGGTCGATTAAATATTGCACGGGAATCAGTCAGACtcagagtagctagctagctaacagtacacaaCTAAAACCCACGTGGATAACATCTTGGGCTGGTTGCTATTATAGTTCGTTTCTAAGTTAGGATCGTCGTTCATATAATGTCCACAATGTCCTCCGGGCACCAGAAAGCAACTATGAAGCGAAAGCAACATCAAGAAGTGGCTGTCACTGTGTCTAGGTTGGATAACAAGTCAAAAAAGACCAAAAGTCTGTCAAATAAAGCCCCTGACAGTAGTGGTGAAGACTCTGAACTGGAAGAAAACTTTGCCTTACTCAGTAAAAAGAGCTCCTCAGGTATGATCGAGGAAGACCAGGAAGAGTCTGAACGAGAGGAAGAGGAGTACAGTTTGAGTGGTGGAGAAGCTCTTGAGGATGCCAGTGAAGAAGAGGCTAATGATGAAAATGCAGAGAGTGATGGTGTTGACCAGACAGGTTTGGGTAGTGACACTGAGGACTCTGAGGATGTCGATGATGACGCAGAACAACCGGAATCGGTAAACAGCAGTGGTGAAATACAAACACAAGACGACATTAAAAAAGAGCTTTCAACAATGTCTTTTGAGGACATTATGAAGCTTCAAAACAAGGTGGGGACAAAGGTCTATAATGAAATAGCCTACGGAACAACCAAGGCAAAACAAACTCCCACAAAGAAACGCCTCAACAAGAATAGGCCCATGGAGATATCAGCCAAGAGGCCAGCCCCTTTTCTCAGACAAGTAGTTCCTGTCAAGAAATCAGTGTCAAGAGATCCTCGATTTGACGATCTGTCTGGTGAATACAAACCGGAGATCTTTGAGAAAACATACAGATTCATCAACGACATCAAACAGCACGAGAGAGATgtagtGCAGAAGAAGCTCAAGAAACCACTAAAGAGCAACCAAAAGAAGGAGAAACTTCAGTTCCTGTTGAAAAGAATGGAGAACCAGGAGCGGGCCCGGAAGAGCCGGGAACAGCAGCGTGAGAAGGAGCTAGAGTTCaagaggaagcagagagagatggcGGGCCAGGGACTGAAGCCTTTCTTCCTCAAGAAATCTGACAAGAAGAAGCTGGAGCTGGCGGAGAAGTACAGCGAACTGAAGAAGAGCGGCAAGCTGGAAAACTTCCTCAgcaagaagaggaagaggaatgcTGGCAAAGACCGCAGGAAGCTGCCTTTCCAGCAGAAGTGACTGTCCTGAAACTGGCCGAGGAACAGTCTTGCTCTTTTGTTTgtcctgatgatgatgatgatgatggtgggacATTTTGGTCTCAGAAGCTGTCCCAGCAACAATTTACACTGCTTTGTTTTTACTAAGGGCCAATCTACCCAGGGGCCGCTCTTCTATCTTGAGATTCATGTGAGTAACTGAACTGGTCTGAATCCCATTAACAATGTATGATTTATGTGAGAGTCTAAGATGCTTGCATGCATCTTAAGTTTGGACTGAGCCAATAAGGTTAGGAGAGGGCTGACAGAGACCGAAGGGCCGCATTCGCTTGGCTATCATGGCCATGGAGGTGTCCCATGGGAGAGGACTTAATCACAACTACGGTATATTATCTAGTACTTCATATCGTCTTCCCGTATTTGCTCACCGGCGAGGAATTTCTGAAAGCAGACTGTtgattttgtatgtttttatGAGGACTTCCAATACAAATACGTATGGTTTGTATTTATGATGTTATTTCATTGGAACATGCAGAAGGGTCATTTTTGTATTAAATATATACGTCATTGCCAATA

Function

GO: NA

KEGG:

id description
K14795 RRP36; ribosomal RNA-processing protein 36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1324978 lncRNA upstream 3164 29165036 ~ 29165237 (+) True G1161821
TU1324729 lncRNA upstream 309295 28858872 ~ 28859106 (+) True G1161592
TU1324704 lncRNA upstream 326804 28841377 ~ 28841597 (+) True G1161567
TU1324701 lncRNA upstream 328718 28838493 ~ 28839683 (+) True G1161564
TU1322805 lncRNA upstream 331781 28818272 ~ 28836620 (+) True G1159923
TU1324920 lncRNA downstream 234 29172755 ~ 29173426 (+) True G1161768
TU1324983 lncRNA downstream 4777 29177298 ~ 29177650 (+) False G1161822
TU1324980 lncRNA downstream 4933 29177454 ~ 29177894 (+) True G1161822
TU1324987 lncRNA downstream 6569 29179090 ~ 29179331 (+) True G1161823
TU1324989 lncRNA downstream 9555 29182076 ~ 29182279 (+) True G1161825
XM_021557381.2 mRNA upstream 307796 28859535 ~ 28860605 (+) True LOC110486062
XM_036940704.1 mRNA upstream 393461 28768216 ~ 28774940 (+) True LOC110485131
LOC118938260 mRNA upstream 414922 28751512 ~ 28753479 (+) True LOC118938260
XM_036940703.1 mRNA upstream 446665 28716818 ~ 28721736 (+) True LOC118938259
XM_036940706.1 mRNA upstream 454612 28707695 ~ 28713789 (+) False LOC110487366
XM_036940718.1 mRNA downstream 94097 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940719.1 mRNA downstream 94097 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940720.1 mRNA downstream 94097 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940721.1 mRNA downstream 94097 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_021557391.2 mRNA downstream 200780 29373301 ~ 29409473 (+) False LOC110486069
TU1322806 other upstream 348953 28818734 ~ 28819448 (+) True G1159924
TU1322364 other upstream 469580 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other upstream 669195 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 910427 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 1042763 28119665 ~ 28125638 (+) True G1159631
TU1325076 other downstream 126237 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 191531 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 321841 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 658233 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 1941790 31114311 ~ 31119677 (+) True LOC110486104

Expression Profile