RNA id: XM_036940718.1


Basic Information

Item Value
RNA id XM_036940718.1
length 3769
RNA type mRNA
GC content 0.54
exon number 25
gene id si:ch211-126j24.1
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29266618 ~ 29370947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCTcgtttttgtgtgtgcgtgtttaatAACGCCCCGGCCAGATTTGTGTCTGGACGCCTCTGTTTCAGCACTATCTCGATATGCTAGCCTTGAGCTGCCTGCTACACTGACAAGTTTCTGCGATATAGCCGAGAGTGGCTACGCGAGCGAGCATCACAGCCTGATAGCCTGCTGCTACCCCGGGAGAGGCGATGATGGCGGCGGccgtagagagaggaggagtgcgGGCCGCTTTCCTGAACCCAGGTAGCGGCGGCGGGATCGGTGGACCACCCCCGGCACCTATGCCCTCTGCTCCCGGAGCCGCGGTTGGAGCGGGAGGCATGGGTTCGAATTCGGGTGGGTCGGATGGTCCCATGCCCGTGCCTATGAATCTTTTTGCGACATGGGAAATAGACCGCTCTTCTCCGAGTTGTGTTCCAAGATTGTGCAGCCTGACCCTCAAGAAGCTGATTGTCCTCAAAGAATTGGACCGAGAGCTTAGCTCCGTGGTGATTGCTGTCAAAATACAGGGCTCCAAGCGCATCTTGAGGTCCAACGAGTATGTCCTTCCTCCAGATGGACTGATGGAGACTGACCTTGAGCTGACCTTCTCACTCCAGTATCCCCACTTCCTCAAAAGGGACGCCAACCGATTGCAGATCATGCTGCAGAGGAGGAAGCGATATAAAAACCGCACCATCCTGGGGTATAAGACCTTAGCTGTGGGCGTCATCAATATGGCAGAGGTGATGCAGCATCCGACAGATGGAGCCCAGATCCTGGGTCTCCATAGCAACGTGAAGGAGGTGCCGGTGCGTGCGGCCGAGCTCAGCGTGTATTCCCTGTCCAGTCAGCCCATTGACCATGAGGACGGCAGCGGGCAGCCAGGGACCAAGGCCAAAGCCTTAGATCGCTCCCCGGATATGGACAACTACTCAGAGGATGACGACGACAGCTACTCCTCGGAGCAGGAAGCTAGCGACGATGCTGTTCAACCAGTGGACCTGTacgatgaggatgaggatgtgcAAAGGAAGCCAAAGAAAAACCGGAGGAAAATGATTCGTACAACATCCATGACAAGGCAACCCAATTTCAAACAGAAGTTTGTGGCCCTGTTGAAGAGATTCAAAGTGACGGATGAGGTTCTGGACTCGGACCCAGTGGACCAGAcccaggaggtggaggaggatctGGACCTGCTCTATGATAGTCTGGAGGTTTACAACCAGAGTGACAGCGGCCCTGAGATGGAGGACAACGAGAGTGTCCTCAGCACGCCCAAACCCAAACTCAAGCCCTTCTTTGAGGGAATGTCCCATTCGAGCTCCCAGACTGAGATTGGGAGTCTACACAGTCAGAAGAGCCAGCCCAGGGACCTGGCCAGCAtcGGTGGAGAGCTGCtgtccccggacagggccaaagtCCAAATAGGGACCAAGTATACAGACGACAGCGCCGGATTGGAGTCTCCTGCAGGGGACGCGGAGGATGAGGAGACTAGGGCTGGCACAGGGTCAGGGGAGGCTAACCCCACTCCCATCAGCTGGGACCTGAGCACGGACAAACTGCCCGGCCCAGTGGCCAAACTCTGCAAGACCGAGTCCCAGACACTCATGTCGCCGAGTAAAACAGAGAACAAGCTGCAGAGGCGTCCTAGGAGCACATCCATGAAGGACCGACAGAACTCCAAGGCCCAGAGTGACAGGACCAGCAGCATCGACAGCGAGACATCCCCGGAATCCAGGATCGCTgtccagGTCCCCAGGAAGTCAGTGTATGACCAGCTAAACCAGATCCTTATCTCAGACGAGCAGCTCCCCGAGAGCATCATCCTCATCAACACCACAGACTGGCAGGGCCAGTATCTATCTGAGATTCTCCATGAGCACAGCCAGCCTATCGTGTGCACCATCTCTGGTGCGGATGTTCATGcggccttcaacaccatagtcacCAGGATCCAGAGATTCTGTAACTGCAATGCCCAGACACCCCCCACCATCAAAGTGGCAGTGGCCGGAGACCAGAGTTACCTCAGCACCATCCTCAGGTGCTTCGTGGAGCAGCTGGCCAACAAGACGCCTGATTGGCTCAGCTACATCCGCTTCCTGGTCATCCCTGTTGGCACTCATCCTCTGGCCAAACACATGTCTTCGTTCGACAGTAAGTTCAACAACATCTTCATGGACGCTGGCTGGAGGGACTTGTTCGGCAGACTGGAGGCCCCAACATCAGTGTCCATAGACAACATTGATGTAGCAGGCCGCGTGTCTCAGTACCTGGCTGGGGCCAGCGTCTCGCACCAGTGTCCCATCTCTGAGGCCATGCTCACCTACAAACAGAAaagGAAGAGAAGCTTGTATTTTGATTTTTACATCAGCCCTGACGAGGACTCCTGTCAGAAGTTTGTGCCATTCATTGGGCTGGTGAAAGTGGGCATCGTTGAGCACAACCTTTCAACCTCAATGGACTCTGATGATGCTGTGATGGGGAGCATCAATATGCTGGCCTCCCCTCCCCCCCAGCCGGGACCACCCTACATGAAGGACCTGACCTGCACcccgcccccctccccctccGTCTCAGCCACCCTCGCCGGAGCCGGCTCTCCGGTGACGGGCGGGGAGGTGATGGGGCTCCAGGTGGACTACTGGGCATGTCACGGCGTCGACAAGAAGAAGGAAGGCGAGAAGCGAGACGTGGGCATCAAGAATACCCTGAAGAGCAACTTCCGCTCGCTGCAGGTGTCCCGCATCCCCAACGGAGGCGAGCTGACCCCTCCTCCCGGCATGGCCATGACCGTTGTCATGAAGGAGAAGAACAAGAAAGTGATATTCCTGAGTAAAAAGCCCAAGGAGAAGGAGGTGGACTCCAAGAGCCAGGTGATCGAGGGCATCAGCAGGCTGATCTGCGCTGCCAAACACCAGCACACCATGCTGAGAGtgtcCATTGACGGTGTGGAGTGGAATGACGTCAAGTTTTTCCAGCTGGCCGCCCAGTGGCCCACTCACGTCAAGCACTTTCCTGTTGGCATCTTCGGCTACACCAAGCCTGCCATGTGACATATCACTGCCACCTAAACCcaagtatgggtagctgcagcccaATATGGCGACCGGAGTATGGGCAAGCGGGTGTGTCGAAAGGAGTGGGTGTATGGAAAGCTAATCAGCTAATTGGGAAGATTTGTTGCCACTCAAGACCGTTTTGCATGGCTGATACGAGTCAATAAGCCACCGACCACTGCAGCGGTTTTGTATCGAGGTGCCTGCTGACCGGAGGTGCTTCCCACTGGGTAGCCGTGTCACATAGTCGCCAGCGGTAGCtaacatggcaacaacaacaaaaatctcccATGATTTTGTTTCCAATAGGATAGAAGCCTACATAAGAAATAACTAATATTGATAACCATTGAGATTTCACattgatacatacatacagtctacTCAATGGGCAGGGCATGAAGGGCAACAACACCTGGACACAGTGTCCTTGCTCCCGCTTTGCCAAGCACCACTGTCCCGGTGTGAGAAGTAGCTATTTAGTAGCCAATATCAGGGTGACAGTCACAGTGAGCATACGCATACAAGCAATAGTACACCCATCATCAGtacttttaatttaaaaaaatatataaacaattGTCAGCGAAATACGAATCAAACTCAAGTCCAAACTCTCTCAGTACGATAGTTGTGTGGTAAGAACCGGAACAAAAAAAACTGCATCATCAAAACCGTCTAACCCACTGGTTCTCAATCCAAAGgggtgcacccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1325001 lncRNA upstream 68085 29198284 ~ 29198533 (+) True G1161837
TU1324997 lncRNA upstream 70797 29195616 ~ 29195821 (+) True G1161833
TU1324989 lncRNA upstream 84339 29182076 ~ 29182279 (+) True G1161825
TU1324987 lncRNA upstream 87287 29179090 ~ 29179331 (+) True G1161823
TU1324980 lncRNA upstream 88724 29177454 ~ 29177894 (+) True G1161822
TU1325118 lncRNA downstream 51649 29419397 ~ 29428583 (+) False LOC110486070
TU1325120 lncRNA downstream 58528 29426276 ~ 29436445 (+) True LOC110486070
TU1325130 lncRNA downstream 70051 29437799 ~ 29438918 (+) True G1161961
TU1325133 lncRNA downstream 117051 29484799 ~ 29485607 (+) True LOC110486071
TU1325582 lncRNA downstream 124844 29492592 ~ 29493126 (+) True G1162361
XM_021557384.2 mRNA upstream 94097 29168401 ~ 29172521 (+) True rrp36
XM_021557381.2 mRNA upstream 406013 28859535 ~ 28860605 (+) True LOC110486062
XM_036940704.1 mRNA upstream 491678 28768216 ~ 28774940 (+) True LOC110485131
LOC118938260 mRNA upstream 513139 28751512 ~ 28753479 (+) True LOC118938260
XM_036940703.1 mRNA upstream 544882 28716818 ~ 28721736 (+) True LOC118938259
XM_021557391.2 mRNA downstream 5553 29373301 ~ 29409473 (+) False LOC110486069
XM_021557390.2 mRNA downstream 6146 29373894 ~ 29409473 (+) False LOC110486069
XM_036940725.1 mRNA downstream 6147 29373895 ~ 29397551 (+) False LOC110486069
XM_036940723.1 mRNA downstream 9661 29377409 ~ 29409473 (+) False LOC110486069
XM_036940722.1 mRNA downstream 9934 29377682 ~ 29409473 (+) False LOC110486069
TU1322806 other upstream 447170 28818734 ~ 28819448 (+) True G1159924
TU1322364 other upstream 567797 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other upstream 767412 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 1008644 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 1140980 28119665 ~ 28125638 (+) True G1159631
TU1325585 other downstream 126614 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 463006 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 1746563 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 2634003 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 3347508 32715256 ~ 32722462 (+) True ifn2

Expression Profile