RNA id: XM_021557500.2


Basic Information

Item Value
RNA id XM_021557500.2
length 5289
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110486130
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31666240 ~ 31673890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATTATAGCCAACCCTTGTTTGTGTGGTACAACAAAACTTGCTGTTCACTGACTATCGCTGCATCTTACGAGCGTGCATATCTTGAAGTGTATTCGGTATTGAGGTTCCCCCTATCAACAGGACAGGATGGCACTTCTCGATTACCCTATTCCAGAGCTAGATGTCACCTTACAAGAGGCAAGCCGTGTGCTCCAGCTCACCCTGAGCCCCGAGCTCTACCCTCAATTCAAAAACACCCTTAGCCAACAGAGGGAGGTCCTGCAGGAGGCCCAAAACTGCTTGGCGGCTGCCGCCTCTGGCCGAGAGAACTGGGTGACAGAGCAATTCAAGAGCCGGCTGCTCTCATGCACCGACCCACTGCCCACCTCGACAGCCATCCCCGCTGTCCTGTCCCCCTCCAGAGCCAAGAAGGAATGTGCCCAACTTGAGAGGGCTGCCGCTCTGCTCTGGGCTGTGGCCAAGATGTATAGTGAGCCTTcgctggtagagagagaggggcaaacTGAGCGCACACAGCAATCAGAGGTGTTTGCTGCCAGCCGCATTCCTGGGAAGACCCAAGATGAGATTAAAGTATACCCAGACTGCCTCCATGCCATCGTAATCTGTGCTGGAGAGGTATTTTCAGTCAACATACTGCAGCGTCTCAGCCCAGGTGGTCCTATGTCCCCTTTACCGTTCCCTGACATCTACAGCCAAGTGGCTCATGTGATGAGCCAACATAGAGCTACCAAGAACAATGAGCCCTCTGCCATCTGCGGCCTCTCTGCCCTGCAGCGGCAAGCCTGGAGTGCAGTGAGGGAGGAGATCCTTAGAGCAGGTGGGGAAGCGGCCGCCTCACTGGGGTTGATGGAGAGTGCTGTGGTGGCTCTCTCCCTGGAATACTGCAATCCACCAGCTGATCTGGCAGACACCCTCAACGCTGTCAGactgggaggaggagatgggCCCTGTCTGAGATATTATGACAAGGTGGTGAACCTGGTGGTATTCAAAGACAGCACAGCAGGGATGGTGTTCGAGCACAGTGCACTGGATGGAATGGTGGCTGGGCTAGTGGCTGAGACTGTGTGGTATCTCTCTGAGTCTCTTAATGTGGACCTAGTCCAGGCCAACACAGAAAGCAATGGGTCAGCCTATCTTAACAAGGCTGATTCCTCCTCCCCAAGACCCCTAGCATTCCCACTAAAGGGTATAACTAAAACAGACCCCCCAAAGTCCTCCCCTAAAGCAATTCATCCCATAATCACGTTTGAGGTTCCCTCTTACCCAGATGTCTTTGCTACCATCCGGGGTCACAGGGGCCTGTACGATGCCTGGATCAACTTTTCCTTGCAGCTCTCCCTAAGGCAGACTCTTGGGGAATCTGCTGCCAGCCACATTCTTGTAACCCCTACCCATATGCGTCACTACAAGCACGGCCGCTGCGATCCGACATACTCCCTCACCATGCAATCCTGCCAGCTCATTAGTGCTTTGGAATCCTGCATTGGACCAGATAACAATCCTCGATACACGAACGAACTGCTCCGTCTGTTCCATGTGGCTTTCCTGGAGCACAAGAACCTGATCAAAGCCACTAAAAGTGGACATGGTGTGGGCCCTCACCTCGCAGCCCTACGCTGGTCCATGTCTCCAGACAACCCTCTCAAGAAGTTTCTTGACCCCTTTGGGTGCCCCTCCGTTTATCTTACTGGCAAGGATTTGATGGAGGGAGTGGAGCTTGCTGTAGGGAATGTGTACGCTAAAGACCAACTGGCTGTAACCTACCTGGGGAGGAGAGACCGGGTCCGTATGGTGCTCAATGGGAAAGGCACCTTTGCCACAGTGTTGGAGAAGCTTCAAGATAGCCTGAAAGTAAATCTGAAGCTGGTGATGCTTCTCGCTGTCAGATATGCCGTAGCCGGGCAAATGGGAGCAATGGAGTGTCTGCTGCAAGAAGGACAAGTAGGAAGAAGGAATGGATCCACCCAAGGGGAAATTCACAAAAGTATTAGTCCAGCAGGCCAAAAACAAGGCAAGACAATGTCCAAGTCAACACTTCCCTCTGACTCTGCCTCCAACATGAGTCCAGACTTTACTCTGGTGATCCATGGTGGAGCTGGGGAGGAGATGATGCTAAATACAAAGGTGGTAGAGGTCATTGAATTTGCTCTGCAGACAGCCCTGACCCTCGGAGCACAAGTGCTACAACAAGGAGGCAGTAGTCTTGACGCAGTGCAGCGGAGTGTGCAAGCTCTTGAGGACTGCTTTCTGTTCAACGCCGGGAAGGGATCGGTTTTCAACAAAGATGGGAAAAATGAGATGGAGGCGACCATAGTAGATGGAAATGGGATGAACTCTGGGTCGGTGGCTTGTGTGCAGAGTGTGAAGAACCCAGTGAAAGCAGCAAGACAGGTCATGGAGAAGAGTGCACACTCACTCTTAGTAGGGGAAGGTGCAGAAGAGTTTTTGCAAGGCTTAGAAGAGAGTGAGAAGCCTATGAGGGCGGAATACTTCCAAACTGATATCCGTCGCAGAGAGCTGATAGCAAAACTCAGTGCTGGCAATGCCTCCAAGAACAACCATCCACAGACAGTGGGAGCTGTTGCTTTGGATCGGTGGTGTAGGTTAGCTGCTGCAACGTCCACTGGTGGGTTGGTGGGAAAATGGAAGGGTCGAGTTGGGGACACAGCAGTAGTGGGAGCAGGTATATTTGCTGATGACAAGCTTGCAGTAACCTGCTCTGGTGATGGAGATGTGTTTCTAAGGCACACAGTTGCTCAAAAAGTAGCCAGTCTCTACCATCATAAAGGCTACAGCCTTAGGGCAGCATGTCGAGAAGTCATGTCTGAGAACTTGAAGGGCAGCTGTGCTGGAATCATTGCTGTAGACGCCAAAGGCGATGCTGTTGTTGAAACCAATGCTGGGGTGTTGTTTGTAGCATCCATGGTTGGTGGCATTGCACGTGTCGAAGTCCTAAGACCCATGAAGAGTTATTCCAATGTGATCTGGGAGACTGACAAACTAGTTGCTCACCTACACTCAAACCCTTGGACACCAGGTGCCACCATCCTTACCCAAAAGACTCTGAGTGGACCGAGCAGCATCTTTCAGTTGGCTGTACCAGATTTCTTAGAACTGTTGCAAGGAGCACAGGCTGTTTCAAACCTGCTATGCGAACGACTGGGGGTACAGCGTTGCGCCCTAGTATTTAACCCACGTCCCGAGACCCCGGCCCATATCCGAGTGCTACCACTTCATGGCCTGGAAACCAACTGGTGCCCCCATCTGACCGGGGAGGAGGACTTTCAGCCCTGTGACCCAGGTTACTGCAGCTCAAAGAGTGGCCCACGCTGGGAAGACGCAGATCTGGACCGGGTTCAGGCCAAGATTCGGGACAAGCTGCCAACGCCTAACGCACCATTGTGTTATGACTTCTTAGGAAATCCCTCCCACAATGGACTGTTCTGCCGTATCGTCCGTGGCGAGGAGCAACAGTGGCGGGTGTGGGAGGACAGTGATCATGTGGCTTTCCTCACCCCCTACCCTAATACACCTGGACTCACAGTTCTAGTGCCACGTAAACCACTGCCAAGCAACATTTTCTGTCTGGAAGAGACTGATTACACATCACTGATCCTGGCCACTCGTAAAGTAGCTGGGCTGCTGGAGGAAGGAATGCATGCTCGAGGTGTTGCACTCATCTTTGAGGGCTTTGAGATTGATTATGCCCATGTCAAGCTGATACCTCTGGTTCCTCCACGTGGTGACAAGCCTGCTGAGGTGTTCCCAGAGTACTTCCAAAGCTACCCCGGGTATGTCTCATCTGCTGATGGCCCTCCCGCTAGCCCTGAATCTCTAAAAGAAATCCACACCAAAATCACACTTTGCAGGCCTCCTCGTTCCTGGGAGGACCCACAGAGCCACTCCATGTTAGCCATCAAGAGCCAGTGGTACCGCAATCTCTTTCAAATTCAAAATACCCTCTTCCACAGCACAGTGGAGTACTTCAACAACACCTGTCAGTACGCGTACGCCCTGACTCCTCTCACCACTGACACAATCTCCTCTCCGATGGGCCTGGGATCAGACTCCGAGCCCGTTTACGTCAACTTGCTGGGGCAGGATGTGTACTTGGCTGACTCCATGCAATTTGTGCTGGAGTATTTCTTGCGATTCCAAGAGAACTTGTCTGGGGCATACTATATATCGGCAAGTTTTCGGGGAGAAGATCCAGATGCCACGCATCTTAACCAGTTCTACCATGTTGAGTGTGAGCTCCTGGGTGACATGGATACTGCCATGCACATAGCTGAGGGATACTTGGCTCATCTCACCAATGCAATGCTGAAAAAACACTCCAACATCATCCTGAACTCTGCTGGAACCCTTTCACATGTCCAGGACTTACTGGAGAAGTTGGAAGGAGGAGCCGCTCTCCCAAGAGTCACTCTGGACAAGGCCATCCCTATGATGCCCTCCCCAGACTGCTTGGAGTGGGTACAGGACGACCAGCCCCAGTTTGGCAGGAAGTTAACCCGCAAAGGAGAAAAGGTTTTGATTGAGAAGTACGGAGGCGCTGTTTGGCTGACAGAGATGGACCACCTGGGAGTGGCTTTCTATCAAGCATATGTGGAGGGCTCGGGCAGACGCAAGGCAAAAGCATCGGACCTCCTCTTGGGATTGGGAGAGACTCTGGGTCTTGGGGAGCGTCACTCTAACCCCGAGATGGTGCAAGAAGCCCTCAGACATCACGCTGTCCCAGAGGAATCCTACAAGTGGTACATCAACATGCGGCAGGTCATTCCTCTACTCACCAGTGGGTGGGGCATGGGCACAGAGCGCTATTTGTGTTGGCTGCTTCAGCATAATGACATCAGAGACATACATATTATACCCCGTTTGAAGGCCAGGAAATACATGCCTTGAAATATCCCTAACCCATTAGTTACTCAAAGACTGATGAAAAAGTTCCCCTAAATGTCAGCTCTTTCATTGAACGTCCTAAGGGATGCATAGAAAGCGAGACAACATATCTATAAAACTCTGAAAGTATACTATAACACTAAGAACAAGAGATGAGTTGCAGTTATGAGAGAGCAGTGATTGTGTGTTGAAAATGTGCTGATTGTGTAGATGAGGAAGGGCAACAAATAGGAGGTATATCCTATCATATACCTTTGTATattttcatatacagtaccagtcaaaagtttggacacacctactcattcaacggtttttctttatttttactactttcgacattgtagaataatagtgaagacatttaaactatgaaat

Function

GO: NA

KEGG:

id description
K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1328174 lncRNA upstream 11537 31654315 ~ 31654703 (+) True G1164618
TU1328168 lncRNA upstream 30381 31635518 ~ 31635859 (+) True G1164612
TU1328160 lncRNA upstream 42969 31622998 ~ 31623271 (+) True G1164604
TU1328144 lncRNA upstream 72946 31592211 ~ 31593294 (+) True G1164591
TU1328136 lncRNA upstream 81732 31583458 ~ 31584508 (+) True G1164583
TU1328179 lncRNA downstream 43618 31717508 ~ 31807548 (+) True G1164620
TU1328176 lncRNA downstream 44713 31718603 ~ 31810999 (+) True G1164619
TU1328181 lncRNA downstream 68836 31742726 ~ 31747322 (+) True G1164622
TU1328585 lncRNA downstream 244858 31918748 ~ 31919040 (+) True G1164993
TU1328818 lncRNA downstream 480061 32153951 ~ 32154176 (+) True G1165223
XM_021557499.2 mRNA upstream 16399 31642382 ~ 31649841 (+) True LOC110486128
XM_021557492.2 mRNA upstream 154511 31489817 ~ 31511729 (+) False LOC110486123
XM_036940766.1 mRNA upstream 154511 31491095 ~ 31511729 (+) False LOC110486123
XM_036939735.1 mRNA upstream 224102 31409126 ~ 31442138 (+) True LOC110486119
XR_002468036.2 mRNA upstream 395809 31267822 ~ 31270431 (+) True LOC110486114
XM_021557502.2 mRNA downstream 10584 31684474 ~ 31690205 (+) True LOC110486131
XR_002468281.2 mRNA downstream 17643 31691533 ~ 31692268 (+) True LOC110487528
XM_036939718.1 mRNA downstream 28074 31701964 ~ 31709740 (+) False il2rb2
NM_001278936.1 mRNA downstream 28200 31702090 ~ 31709521 (+) True il2rb2
XM_036940770.1 mRNA downstream 327851 32001741 ~ 32159164 (+) False LOC110486134
TU1327390 other upstream 546563 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 1834944 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 2171338 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 2295293 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 2366584 29298758 ~ 29299656 (+) True G1161908
TU1328699 other downstream 327861 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 1041366 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 1555223 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 1566063 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 2116750 33790640 ~ 33803665 (+) True G1166779

Expression Profile