RNA id: XM_036940774.1


Basic Information

Item Value
RNA id XM_036940774.1
length 6610
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110486139
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32290341 ~ 32370648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAAGTCTTGACTCTGTCACGTTAAAGCTCAGTTTATTTTAGGCAATTTTACAAAACGGATTATATTAGAAGATAAAATGAATAGAGATGGGATCGAGGTGTGTTATCTTGTATGTTATTGATTTATTTAATGATCCAGTTTGAAATGCAAAGGTCCCTTGGACAAAGAACTGGAGGGATTACCTTGTGGAagttacagtgcatttgaaaagtattcaaaccccttcactttttcctcattttgttacgtttgttacgccttgttctaaaatgtattaaatcatttcccccctcaacctacacccaataccccataatgacaaagctaaaacaggtttttagaaatgtttgcaaacgtataaaaatacaaaaaaaacgtACAAAAAATAGAGTttctaaaaaatgtttttgctttgccattatgtagtattgtgtgtagactgagtgggtggggacgatttaatacattttagaataaggctgtaatgcaacaaaatgtggaaaaggtgaaggggtttgaatactttctgaatgcactgtacctggAATACACAGTGGATATTTTTCCCCTAAGGATGGATTTGGTGGGAGGTGAACTTTGCTATTGCAAGGCTGTCCTCTGGCGAGGCAGTAGGTGGGTGGTGTGCAGCTGGCCTCGGCACCGGGAGAGGCCCCCTCGcccgcccccccctccccccctgtgCTGCATGGCTGCGATGGCGCCCGCTCTAACCGACGCGCCGGCCGAAGCTCACCGCATCCGCTTCAAACTGGCTCCGCCCTCCTCCAACCTCTCCCCGAGTGGCGTGGAGAGCAACGGCGGCACCAGTCACATCCTCGTCTCCAGCAACGGCGCTGTCAAGCGCAAGGCCTCTGAAGAGCGCAGTCCCCACGGGGGGTCCATCACAGGTAAGGGGAAGGAGGAGTTGACACGAAGCAACGAGGCTTCTTCCACACCTCTTGGGAAACTACAGCCGCTGGTGGCGTCGTACCTGTGCTCAGACGTGACGTCCGTTCCCTCTACCAAGGAGTCACTGAAGCTGCAAGGCGTCCTGCTGCAGAAACACGGCCTTCTGCCCAGCTTCCTGCCCAGGAAACACAAGACACTGGAGCTCTCAGAGGAGCAGCTCAAGAGCATCATGAGTAACAGCAGAGGAGGTGGTCCCCCTGCCCTGTCAAGCCCACCGCCACCGGTCAACGGCGTGGCTAAGAAGTTTGCCAAAAACGGGCCGGACCGGGACAGTATGACAACGGTCAATGGAGGTAATAACAGGCCTCCTGCTGGACATGGACTGGACTCCTCAGTGCCCCAACCCAACACAGCTGCCTCTAGAGGAAACTCTCCTCTCAATGGGGGAGGGGAGCACCAGCAGCCCACAGGACTGTCCTACAACCCTGCCGGACACCCTGAACAGCCAGCACCCCCCGCAGCCTCCACCAACCCCCCCATGGACTGCCCCGACAGCAAACCCTCAGAACGGCCACCATCGCTGGCCACGGACACATCATCCCTTTCCCCAACGGACCGACAGACCTCCCTGGGCATGGGCAGCCTTGGAATGGACGTTAAGGAGCGGTCTCAGCAGAGCAAGAGCCGGCAGGGCGAGATTGAGGGGCGTCTACGGCGCCTGAGGAAGCGCCTCCAGGTGGTTCAGGCCAAGCAGGTGGAGCACCACGTCCAACAGCAGCTGGGGGGGCTCCTGGAGAGCACACTGGGGCCACTGGATGCCCTCCGAACTGGCGGGAGACGAGGAGGCCAGGACGCCCCTCTCACCCTGCAGGAGAGGGAGGGGCTTGGGCGATTCCTGAAGGACGGCTCTGTACCAGCGGAGCTGGAGCGCCTGTCCCTCAGCGGAACCACCAACCTGAGGTCCACGGAGAGCGCCTTCGACTCGGACGCCACGGAGAGCAGCTCCGGAGGAGAGACTGACGTGGAGGAGGACGAGCTCACCAGGGTGGACATCGAGCAGCGACACATCTCTCTATGGAGACGTGCGGAGGGGCGCTACGCGGTGGATAGGGCCTCCATAGTCAGCCACTGGAACTGGCTGCAGGCCCACGTGTCTGACCTGGAGTACCGCATCCGCCAGCAGACGGACATCTACCGCCAGCTCCGCTCCAACAAGGGTTCCATAATGCTGGCAGAGACCTCCCCCTTTGACGTGTCACCTGAGGATGGGGAGGTGAAGGCGGAGCCTGTTGGTTGCCCGGTAATACAGGAGTGCGGCTCAGACGGTGGGGCCGAAGGTCCCGGAACGGTCTCCGTGGAAACGGGCCTGAGGAAAGGTTGCGCGCCCGGGAGACGGGTCAACGGGATCATCAACAGCCTGCGGCCTGGCTCTCCAGAGTGTTCTGACCTGGAGAAGCAGCTGAGGAAGCAGCAGCAGAGCCTGCCCTCGTCCCAGCTACCGTGCTCCCCTCAGGACGACACGTGTGTGGCGGCCCGCACACGCCCCCTCCTCAGCTGCAAGAGACGACGCCTCGTCAGGCCGAGCACCGTCACCAACCTCAACCGCaagggCCAGAGGCTGTGCGTACAGGGTCCTCGCTGCGGCTGCGAGGTCAACCCCCAGTGTATGACGTGTGGCGGCcgcaccctctcctcctctgacgtCCAGTACGAGCGCCCTCTACTGGAGAGGCTGTCCCAGTTCGACCCCTGCGTGcaccccatcctctccctctcagacGACGTGACGATGAGTCTGCACCTGCAGCGCGTCCTGAAGTCCCACTGGAACAGCCGGCCCCTGGAGAAGATGAAACCCCTGAAGAAGCTCTCCCTGAAACACAAGCTCTCCGTGGGACGCCCTCACGACCCCTCCGCCTCCTTCACCTCCAAAGACAAACACAAGATGACCAACTCCCTCCTCTCCACAGTCCGCCTGTCCCACCACAAGGTGCGTTCAGAGAAGCTACACAGGCAGCAGCTGGACAGCCTGCTGGGGTCCACCAAGCTGGAGGGCCGCCCCCACTACCGAGGGGAGCAGGGTCACGGGCCCTACGACAAGAGCCACGCACGCAAGAGGCCCCGAGAACACTCGCTGTCGctggacagtatggacaacacccCTAAGCTGTACCTGGATGGGGGCAGTCTGTGCCCGTCTCTATCTGCTGGGCTCCCCGCCCACAGCTCCCTGCTCCGACAGCTGTCAGCCTCCTCAGAGACCTGCTCCGTGCACTTCACCTCCTTCAACAGCAGCCTGAGGGACAACAGCGCCCcgCATCAGCCCATCcgcaggaggaggggagaaagctCCTTTGACATCAACAACATCGTCATCCCCATGTCTGTGGCTGCCACCACCCGCGTGGAGAAGCTGCAGTACAAGGAGATCCTCACCCCGAGTTGGAAGGAGGTTGACATTTGTGCTAAGCCTATCGCTGAGGAGGCTGACATTGAGGAGATTGAGGACCTGACAGACACTGCGTTCTCCCAGCTGCACCAGCCCTGCGAGGACCAGGAGCGTTCCCGCTGGAGCTGGACGGCCAGCGCCATCGCCAAGAGGAGAGGCAGCCGTTCGTATGTCAGTGGACGGTTGGATGGTCGCACCACTCCCCTAATGAGCAGCACCAACCCTTCCACGCCGCAGCCCTCCTCCCCAGACACAGCCCACTTCCACGCCCTGCAGGACTACGGCAGTGCCGCCTCCCCCTGCTCCCCGGCCAGCCCCGACCTGCTATCCTACCCTTACACCCCAGGGTGTTACACAGCGGGAGGGTACTCCTACACCCCTATAGGCTCCAGGGAATCCCACCGCCTGCTCTCCAACGAAGACACGCGCTGCTCCACACCTGAAGGCACCTACGAAGAACTGgttCCCATCCCAGTACACCCGTGGGACCGGAGGAGCTTCCCCCTGGAGAGCGACCCGCCGCCGGAGCCCGAGGAGCAGCCAGGGAACGCAGAGGAGCGCCCCTATAGAACCATGCGCCACATCTCCGGTTGCAAGACGGGCTCGTCCAGGTCCGAGTCCGACACCGGGGGTCCCCCCTCGCCGCTCCTTCCCCCTGACGACAGCAGCAAGCAGAAagccccctcctccaccacctccctcacCACCACTCTCACCAGACCCTCCCACCGATGAACAAAGGCTCTCACTGCATAAAGGACTCAACACTTTCTTTCTTTCACAAGACTCAAAACAAGAACTACATCAACAATGGAATAATGGACTCCTGTTGTTTGATATTCAAACATCAGTCAAATTCTTTCACAGTTTTTAGTGAACATAGACCGAGCCCCCCGTCAGAAATCCGTTTTGTTCTTTTCTTGCTCACTGAaatgaataaatatatataaaagtgAATGAAAAAAGGAGAGCAATTCAACTGAAAGCTGAATTTGTGATGAGCAGGGCATATAGAGTTGCTTCCTGTTTCTGGGCCAATGGGCTGAGGGCTAAGCAGCCACTCAGGCAGTGTGTGTACCTTTGTAGCTTTCTTTTCCCCGCCCCATGTCAGTTTtaacatggagtaaaacaaaaaaCAGCAATGCCTTGTTGTCATAGCTTGTTATGTTGTGTCACCTTGAATCAACCTAATATTTGTCCCTCCCCAGAGAATTGGCGTGAACCTGCAATGTTCCTTTCAGCACTTGATTCACAGAGCTGTTGTAGTAATCTGAGTTTGCCATCTTCCTTGACGTCTGTCTGTGCTTTTCGTTCATCTGTTTGTCTGCAATAGTATAGTTGTTTTATACATATAGGTTTAATAAGATATTTCCTTTCAACCCCGTCACATAGACTGATGGAACAAGTGGTTGTGGGCGGTGTATAAAATAATTTTAGCACGGCAAGTAACACCACCCCTCAATATGATATTACACGAGTTTGAATAAATCATTCAATCAAATAAACCAAAGTGAAACAAATAATCATGTGAACTAATTTAAGACAGGAAAAAAAATGCATCACCTCTCCTACATAGGAATGATTCTATAGAAATGGAGGGAGTTGATATGAGTGTTCAACTGTGTGCATCTTGAATTTCTGTCTTCATTTTCTTTGTGGTGTGCGTGCGGTTATTTCACGCTTTTCTGATTGGTTTGGAGAATGTGCAAGAAATCACTAAAGCGTGCAGTCAGGTTCCAATTACAAAGAAAGCTCCTATGTTTTTGAATGTAGTATTTTGGCTTTATCTTGACTCAAGGCCCTTCATTATTCGCTCTATTTTAAATTTCTGTACCCTAGCTATTGACACGGGTTGCCGTAGTTCACATCCGATGCAACGCTTCCAGCTTGTAATGCATAATTGCCATGCAATTTGCATGTCACTTGGTAGAGTAAAAGAGAACATGAGACAAATTAGGGAAAAATATGTAAATGTACCTAATTAATCTCGTTCCTGTGTCACTGTGTTTGGAATTGCACAAGGCAGATAATGTCAATGTTGGATTGTCAATGCAGTTCCACAATTGGATTAAAATCTTTTTGGGAGTTCAAATGTCAAATGCTTTTCATGTAACAATGCAAAAGAAAACTCCAAGTTTGGGTTGTTCATTAGAGCAGACAAATGGAaaatgttgtgtaatgtttaaaaaaaaaaaagtccagGTAGTCTCTGCCCGTTATATTCCGTTTGGTGCATACTGAACACGGCCCAGTCGGCTGCCCTAGTTCCCAGCACCCCCTGCTGTGTCCCTCCCAGCAGATGAAGTGGAGCATCGTACAGAAAGCCTCTAGATGAATCTCTCCATCTAAAAAGGCTTTTTATGTTTGAGTCACTTTAAGTCAGAAGGCTGTGGCCATCACACACACAGGAGGCTATGTGGGGATTTATCAGTTGTGGAGTCACTTTGACCATGCCCATCTCACCAACCCTCCCGCCGCCTGGCCGTTTGTACTTGGTCACTTTGTAAGTTAAAACCACATGTTAGCCTCAACCAATACCCTGCTCTTGTTCCAATTACTGCTAATCATGTCATGTTTGAGTCTAAGGAAAAAAATAAGAATGTGTGGGGGGAAAAATCCTTCAGATCACTGTTCATTTGAGCCTTTATTGTCTCCACCCGCTTCCTTGATTCTGCTGTCTTGTCATTGCGAGGAGGTAATGTGAGGTCTTCACTGGTGAATCCTTTGAATCATTCTCCCATAAGAGTCTGTACTCTTGGTCGGTCCAGACAGACTGACCAAAAGACAAACCTAACTCAATTTCTAGGGACCATCGATGCCTGTCCCTATCCCTTATTTCTCCTCACAGAAGTCCCCGTCATGAATCATGATCAACTATGGTTTGTCTGCGAGTGGGGATCAGAGGACCCACCAGAAACTGTTTCGATGTACAAGAAGGTTTGACTAGCGTTAAACAGATATTGTATTGTCTGGGCTATTTTCATACTTTCCAACGTGGTGTATGGGGGTGGGTGAGTCTGGTATATCCTTTAGCATGTAATAGTTTGTACAAAAAGTATATTTTGTAAATAACTTAACTGTTTGACGTTCAGGCTGTAGCTGTCCTGATTGTATAGGGAGAAGACACGACAAGTACAAAATATTGAACTTTTCTTTATGCAgaggcaacaaacaaaaaaagtgtaTGATTGATGAATCCGACGGGCAGGCAGCGTTTGTGCTTCTCAAAATAAAAGTGAATTATACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1329035 lncRNA upstream 26487 32263263 ~ 32263859 (+) True G1165418
TU1329028 lncRNA upstream 38826 32251306 ~ 32251520 (+) True G1165411
TU1328965 lncRNA upstream 53496 32185478 ~ 32236850 (+) True G1165356
TU1328962 lncRNA upstream 105978 32182733 ~ 32184368 (+) False G1165355
TU1329094 lncRNA downstream 136244 32506892 ~ 32508136 (+) True G1165475
TU1329381 lncRNA downstream 171395 32542043 ~ 32542339 (+) True G1165740
TU1329398 lncRNA downstream 179449 32550097 ~ 32550457 (+) True G1165755
TU1329413 lncRNA downstream 204203 32574851 ~ 32590340 (+) True G1165768
TU1329464 lncRNA downstream 286964 32657612 ~ 32672802 (+) True G1165814
XM_036940771.1 mRNA upstream 1022 32268216 ~ 32289324 (+) False LOC110486136
XM_036940772.1 mRNA upstream 1022 32268217 ~ 32289324 (+) True LOC110486136
XM_036940770.1 mRNA upstream 131182 32001741 ~ 32159164 (+) False LOC110486134
XM_036939718.1 mRNA upstream 580606 31701964 ~ 31709740 (+) False il2rb2
NM_001124732.1 mRNA downstream 91563 32462211 ~ 32505925 (+) True LOC100136790
XR_005035777.1 mRNA downstream 111890 32482538 ~ 32482591 (+) True LOC118938569
NM_001124690.2 mRNA downstream 154589 32525237 ~ 32528851 (+) True gh2
LOC110487530 mRNA downstream 181599 32552247 ~ 32566783 (+) True LOC110487530
XM_021556157.2 mRNA downstream 344289 32714937 ~ 32722676 (+) False ifn2
TU1328699 other upstream 179613 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 1170669 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 2459050 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 2795444 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 2919399 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1329495 other downstream 344608 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 858465 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 869305 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 1419992 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 2310540 34681188 ~ 34687650 (+) True LOC110486188

Expression Profile