RNA id: NM_001124732.1


Basic Information

Item Value
RNA id NM_001124732.1
length 5851
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC100136790
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32462211 ~ 32505925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCCCTCCCACTGGCACCGAAGTGTTTCGCCGCTTCACCCTTGAGTCGCTGGCGGAGATCGAGAGGCGGATGGCCGAGGAAGcagaggagcaggagagaaaaAAGGCCCTGAACATTGAGGTGGCAGAGGAGGACCTGCCAAAGCCAGCCGTCGACCTGGAGGCCGGCAAGGCCCTGCCATTCATCTACGGAGACCCGCCACCTGAGCTGTTCAACACGCCTCTGGAGGAACTGGATCCTTTCTACAAATCACACAAAACCTTTATCGTCATCACCAAAGGGAATACAATCTTCAGGTTCAATGCTGAGCCTGCCTGCTATATTCTAACACCCTTCAGTATTCTCAGGAGAGGATCCATCAAAATTCTTATACATTCATTATTTAGCATGTTCATCATGTTAACAATCATGTCCAACTGTGTGTTCATGACGATGAGTGACCCTCCGGCATGGAGTAAAACTGTTGAATATGTTTTCACTGGTATCTATACCTTTGAGGCAACAATTAAAGTGTTGTCCAGAGGCTTCTGTGTTGGAGATTTCACATTCCTTCGAGATCCATGGAACTGGCTGGATTTTATGGTGATCAGCATGGCGTACCTCACAGAGTTCGTTGACCTGGGCAATGTGTCTGCCCTCAGGACGTTCCGTGTGCTCCGAGCCCTTAAAACAATCACTGTAATTCCCGGTCTGAAAACCATTGTGGGCGCTTTGATCCAGTCAGTGAAGAAGCTGGCCGATGTGATGATCCTAACAGTGTTCTGCCTGGCTGTGTTCGCTCTGGTCGGCCTTCAACTGTTCATGGGAAACCTGAAGCAGAAGTGTGTTTACTGGCCCCCTGTGGAATGGCGTATAAACTCTACCAACATGGACAACATCACTATGGCCTTCAACGACACCAGTGGTTTTAATGACGTCATGGACTACAATGGCACAAACAGCAGCAACAGTACGTGGGACTTCAAGGCATACATCGACGATAAAGTGAACCATTACTTCCTTCCTGGAATGTTAGACCCTCTTCTCTGTGGAAACGCTTCTGATGCTGGAAATTGCCCTGAAGGATACACGTGTATGAAGGCCGGAGGGAATCCCAACTATGGATACACAAGCTACGACAGTTTTGGATGGGCCTACCTTGCCCTATTTCGGCTCATGACACAGGACTTCTGGGAAAATCTATTCCAGCTGACTCTTCGCTCAGCAGGGAAAACCTATATGATTTTCTTTGTGGTGGTGATCTTCCTGGGCTCGTTCTACCTGATCAACCTGATCCTGGCTGTGGTGGCCATGGCGTATGCCGAGCAGAACGAGGCCACCATGGCCGAGgccaaggagaaggaggaggagtatGCCATGATCATGGTGCAgctgaaggaaaggagagaagcagAGGTCAAAGAGAGACATGACAGGCATCATGAACACCATGAACACGCTGAAATTGCTGGCAGTCAGACGTCACTGTCCGGTAGAACATCTAAGAAAGAGAAAGGTGAAAAGGCAGATGAAGAGGTTGCTGATGATGAGGCGTGTACGTCCTCCAGCCTTTATAGCGAGGCTATAAAGGACTCCAATGGAGGCCTCATGATCAGTGCCAACGCCAACAAGGTCCTGACAGACCAGGAGTCTGCTGTTGTGTTGAAGAGGGCCAGTGGACCCAAGGGGAGTAAGGACCAGCTGGAAGTAGTAGGCCTGCAGAAGAAGACACCCAGTTCATCCAGTGTCTACAGCCAAGATGACATGGACGATTTGGAGGAGGAACTGAGACCTTGTCCGCCTTGCTGGTACAAGTGTTCAGACATCTTCCTGAAATGGAACTGCTGTGTGCCCTGGGTGACTTTCAAGAAGTGGATGTACTTCATAGTGATGGACCCATTCGTGGACTTGGGTATCACCATCTGCATTGTACTCAACACCATGTTCATGGCCATGGAGCACTACCCCATGACGCCAGAGTTTGAAGAAGTCCTGAGTGTGGGGAACTTGGTCTTCACAGGAATCTTCACAGCAGAGATGGTGCTGAAGCTCATCGCCATGGATCCGTACTACTACTTCCAGGTCGGGTGGAACATCTTCGACAGCATCATTGTGACAATGAGCCTGGTGGAGCTGGGGCTGGCCAACGTCGAAGGTCTATCCGTGCTACGTTCCTTCCGTCTGATGCGTGTTTTCAAGCTGGCCAAATCCTGGCCCACACTCAACATGCTAATCAAGATCATCGGTAATTCAGTGGGCGCACTGGGTAACCTCACCCTGGTTCTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGCATGCAGCTCTTCGGCAAGAGCTACAAAGAGTGTGTCTGCAAGATCTCCTTGGACTGCGAGCTGCCCCGCTGGCACATGCATGACTTCTTTCACGCTTTTCTCATCATCTTCCGGGTGCTGTGCGGAGAGTGGATCGAGACCATGTGGGAATGCATGGAGGTGGCCGGACAGGGCATGTGTCTCATTGTCTTCATGATGGTCATGGTCATCGGTAACCTAGTGGTGTTGAACCTCTTCTTGGCCTTGCTGCTGAGCTCGTTCAGCGGTGACAACCTGGCGGCTCCAGAGGAGGACGGGGAGATGAACAACCTGCAGATCGCCACCGGCAGGATCACCAGAGGCATCGACTGGGCCAAGGCCTACGTCATCCAGCAGTTCTGCATTATCATAGGGAAGCAGCCTAAGGAGGATGGAGACGGGGCTGACGGTAATGGGGGTAGTAATGGGGATGTGGACGGCCTCCCAAAGGGCAGCTTGGCTTTGAAAAATATAATCTCCAGTGACAACCCAAAGGCTGATTTGGAGCTCACAATGCTTGACGTTTGGATAGACGATGTCAACCCAAGTGGATTTCTTACAAATGACAATTTGACCCTGGATGTACCTATTGCCAAAATGGAGtcggatgatgatgaggatgacatCTCtgaagaggaagaaggagaaggtGCAAATGGAGATGCTAAAGAGGATACTGAGTTAAAGAAACCTATTGCACCGGACAATGCCTCTTCAATATGCAGCACAGTGGACAATCCCCCTgaagtggaagaagaggaggaagaagaggcagACACCACCAACCCTGAGAACTGCTGGACCGAGAAATGCATTGGAAGATGCCCGTGCCTTGATTTTGACATCACCGCGGGCAAAGGAAAGACTTGGTGGAACTTCAGGAAGACATGCTTCCTCATTGTGGAGCACAACTACTTTGAGACCTTCATCATCTTCATGATCCTGATGAGCAGCGGCGCTTTGGCTTTTGAAGACATATACATTGAGCAGCGCAGGACCATAAAAATCATCCTGGAATATGCTGATCAAGTATTCACCTACGTGTTCATTATTGAGATGCTCCTGAAGTGGGTGGCTTATGGATTCCAGGCCTACTTCACAAACGCATGGTGCTGGCTGGACTTCCTCATTGTGGATGTGTCTTTGATTAGCTTAACGGCTAACATCCTGGGCTATGCTGAACTTGGACCAATCAAATCTCTTCGAACTTTAAGGGCATTGCGGCCCCTCCGCGCCCTGTCCAGATTTGAGGGAATGAGGGTGGTGGTGAATGCTCTGGTAGGGGCTATTCCTTCCATCTTCAACGTGCTTCTAGTGTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGTGTAAACATGTTTGCTGGGAAGTACTACTACTGCTTCAACACCACGTCTGAGGAGAGGTTCTCTGCTGACGTTGTGAATAACAAGACCGAATGCTATCAACTAATGGAGGGTAATGATGACGTGCGCTGGATGAATGCAAAGGTCAACTATGACAACGTGGCCATGGGCTACCTCTCCCTCCTGCAAATAGCAACGTTTAAAGGATGGATGGATATAATGTATGGCGCTGTGGATTCACGTTTTGTGGAAGACCAGCCCATATATGAGGATAATGTTTACATGTACATCTACTTTGTCATATTCATCATCTTTGGGTCCTTCTTCACCCTGAATCTCTTCATTGGTGTCATTATCGACAACTTCAACCAACAAAAAAAGAAGTTTGGAGGGAAAGACATTTTCATGACAGAGGAACAGAAGAAATACTACAATGCCATGAAAAAGCTTGGTTCCAAGAAGCCACAGAAACCCATTCCTAGACCCCAGAACAAATTCGCAGGCCTTATTTTCGACCTGATCACCCAACAATTCTTCGACATCTTCATCATGGTGCTGATCTGCCTCAACATGGTAACGATGATGGTGGAGACGGACGGCCAGAGCAAGGAGAAGGAGGATATACTCTTCCTCATCAACCTGGTGTTTATCATCGTCTTCACCACAGAGTGTATCCTCAAGTTGATCGGACTgcgacaatattttttttccgtCGGATGGAATATTTTTGATTTTGTCGTCGTCATTCTCTCCATCGTTGGTTTACTGCTGGCGGACCTCATAGAGAAGTATTTTGTCTCACCTACCCTTTTCCGTGTCATAAGACTGGCCAGGATTGGTCGAGTTCTGAGACTCATCCGAGGAGCTAAAGGCATCCGGACACTGTTGTTTGCCCTGATGATGTCACTTCCTGCTCTCTTCAACATTGGGCTCCTGCTCTTCCTTATCATGTTTATCTTCTCCATTTTCGGAATGTCCAACTTTGCGTATGTCAAGAAGGAGGCCGGAATAGACGATATGTTCAATTTTGAAACTTTTGGCAACAGTATAATTTGTCTGTTCATGATCACAACCTCAGCTGGTTGGGATGGTCTCCTCTCACCCATTCTAAATAGTAGAGCTCCGGATTGTGACCCGGACGTGGAAAATCCCGGCACAGATGTAAGAGGCAACTGCGGCAGCCCTGGTTTGGGAATTTGTTTTTTCTGCAGCTACATCATCATGTGTTTCCTTGTTGTGGTCAACATGTACATTGCCATTATCCTCGAGAACTTCAATGTGGCCACAGAGGAGAGTGGCGACCCTCTGTGTGAGGAAGACTTCGAGATGTTCTACGAGACCTGGGAGAAGTTCGACCCTGACGCGTCACAATTCATCGCCTACGACATTTTGTCGGAGTTCTGTGACACGCTTAAAGACCCGCTTAGGATCCCCAAACCCAACGCAATCAAGCTGATCACCATGGACCTTCCCATTGTCCCTGGGGATAAGATCCACTGTCTGGACATCCTGCTGGCGCTGACCACAGAGGTGCTGGGAGAGTCAGCGGAGATGGATGCCATGAAAGAAAGCATGGAGGAGAAGTTCATGGCCAACAACCCCTCTAAAGTGTCATACGAGCCAATCACCACCACCCTGAGGCGAAAGCAGGAGGAGGTAGCAGCTGTTGTTATTCAGAGAGCCTATCGTAAGCATCTGCTGAGACGTTCATTGAAACTCGCTTCCTACAAGTACCGCGAGAAGAAAGCGTTAACCAAGGAGGACGAAGTGCCGCCAGAGACGGAGGGAATGATTGCCATCAGGATGAACAAACTGTATGGAAGCCAACAATCACTCGGAGTGGATGAAACAGTTGTAGATATGGATTCTCATGAAAAACGGGAGAGCAAAGAACTGACAGAGACACAACTTCCTGTGGAGACTACTGAAGAGCCGCTGCCTGTGGAGCTTCAGAACGAGATCATCTTGCACTCTGCCCCCTTTGTCATCCCGGCCTCAATCCGTATCTCACAGCTGAAAGAGTCCGATGTTTGAATAGCTAGTGCAACCAATGGATAAACACTGCATCATCATGGTCTTCTGTCTTTGACGATGAGACTGCTTGTTCATCTCCAAAGTCCAACTTTGTTATGTTTGGCTTGGGTCAGAGACAGGGTTCTCGCTAACTAAGACTCTGAGGGACA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG:

id description
K04837 SCN4A, NAV1.4; voltage-gated sodium channel type IV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1329008 lncRNA upstream 171299 32290341 ~ 32290912 (+) True LOC110486139
TU1329035 lncRNA upstream 198352 32263263 ~ 32263859 (+) True G1165418
TU1329028 lncRNA upstream 210691 32251306 ~ 32251520 (+) True G1165411
TU1328965 lncRNA upstream 225361 32185478 ~ 32236850 (+) True G1165356
TU1328960 lncRNA upstream 278327 32183189 ~ 32183884 (+) True G1165355
TU1329094 lncRNA downstream 967 32506892 ~ 32508136 (+) True G1165475
TU1329381 lncRNA downstream 36118 32542043 ~ 32542339 (+) True G1165740
TU1329398 lncRNA downstream 44172 32550097 ~ 32550457 (+) True G1165755
TU1329413 lncRNA downstream 68926 32574851 ~ 32590340 (+) True G1165768
TU1329464 lncRNA downstream 151687 32657612 ~ 32672802 (+) True G1165814
XM_036940773.1 mRNA upstream 91563 32290341 ~ 32370648 (+) False LOC110486139
XM_036940775.1 mRNA upstream 91563 32290341 ~ 32370648 (+) False LOC110486139
XM_036940774.1 mRNA upstream 91563 32290346 ~ 32370648 (+) False LOC110486139
XM_036940778.1 mRNA upstream 91563 32291504 ~ 32370648 (+) False LOC110486139
XM_036940779.1 mRNA upstream 91563 32291504 ~ 32370648 (+) False LOC110486139
NM_001124690.2 mRNA downstream 19312 32525237 ~ 32528851 (+) True gh2
LOC110487530 mRNA downstream 46322 32552247 ~ 32566783 (+) True LOC110487530
XM_021556157.2 mRNA downstream 209012 32714937 ~ 32722676 (+) False ifn2
NM_001160505.1 mRNA downstream 209514 32715439 ~ 32722675 (+) False ifn2
XM_036939702.1 mRNA downstream 209546 32715471 ~ 32722676 (+) False ifn2
TU1328699 other upstream 351478 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 1342534 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 2630915 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 2967309 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 3091264 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1329495 other downstream 209331 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 723188 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 734028 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 1284715 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 2175263 34681188 ~ 34687650 (+) True LOC110486188

Expression Profile