RNA id: NM_001160505.1



Basic Information


Item Value
RNA id NM_001160505.1
length 800
RNA type mRNA
GC content 0.37
exon number 6
gene id ifn2
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32714937 ~ 32722676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGCTAAAAGCAAAATAAACAGCTCTTTACAATGTGTACAATGCAGAGTTGGACGTGTCTTTTTCTTATTCTTTGCAGTATGCAGAGTGTGTGTCATTGCTGTGACTGGATCCAACACCACTTCGGTCACTTAAGCGCAGAATACCTTTCCCAGCTGGAGCAGATGGGAGGAGATATCACAAAGCAGAATGCCCCTGTCCTTTTCCCAACATCACTTTACAGACACATATATGATGCAGAGTTTGAGGACAAAGTCAGATTCCTGAACGAGACCATCTATCAAATCATAAAACTGTTTGATGGGAATAGGAATAGGAAGTCAGTCACCTGGGACAAGAAAAACCTGGACGATTTCCTCAACATTCTCGATCGCCAATTTGAGAACCTTAGTTCCTGTGTATCACCTGTCGTGAAACCTGAGAAGAGACTGAAACGGTACTTCAGGAATTTGAATAGAAAAGTTCTGAGAAAAATGAACTACAGTGCAGAGGCGTGGGAGCTCATCAGGAAAGAGACAAAACGTCATCTGCAAAGATTGGATATCCTTGTGGGACAGATCTACTTAGGACAGATCTCACATCTCACTTACCAGTTTATAAAGCATGAATACAATCATGTAGGACCCTGTTAgtttatttattatatttaaatatgtaaattattgttttttattttcataaattattatttatattttgtatTTCCCTTTTGTACCTGTATTGAACTGAAACGTATTGCCTGTGTACTTTGAAAATCAATGAAAAAATAATATTGAAATTGtgaataaaaatgtattgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1329493 lncRNA upstream 1634 32713241 ~ 32713805 (+) True G1165840
TU1329467 lncRNA upstream 41253 32665664 ~ 32674186 (+) True G1165817
TU1329464 lncRNA upstream 42637 32657612 ~ 32672802 (+) True G1165814
TU1329413 lncRNA upstream 125099 32574851 ~ 32590340 (+) True G1165768
TU1329398 lncRNA upstream 164982 32550097 ~ 32550457 (+) True G1165755
TU1329549 lncRNA downstream 65309 32787984 ~ 32788190 (+) True G1165885
TU1329557 lncRNA downstream 81218 32803893 ~ 32804233 (+) True G1165893
TU1329563 lncRNA downstream 91943 32814618 ~ 32814867 (+) True G1165899
TU1329566 lncRNA downstream 96320 32818995 ~ 32819202 (+) True G1165902
TU1329525 lncRNA downstream 117478 32840153 ~ 32843099 (+) True LOC110486141
LOC110487530 mRNA upstream 148656 32552247 ~ 32566783 (+) True LOC110487530
NM_001124690.2 mRNA upstream 186588 32525237 ~ 32528851 (+) True gh2
NM_001124732.1 mRNA upstream 209514 32462211 ~ 32505925 (+) True LOC100136790
XR_005035777.1 mRNA upstream 232848 32482538 ~ 32482591 (+) True LOC118938569
XM_036940777.1 mRNA upstream 344791 32293514 ~ 32370648 (+) False LOC110486139
LOC118938068 mRNA downstream 97371 32820046 ~ 32824535 (+) True LOC118938068
LOC110485150 mRNA downstream 102547 32825222 ~ 32826023 (+) True LOC110485150
XM_021557519.2 mRNA downstream 103817 32826492 ~ 32843099 (+) False LOC110486141
XM_021557520.2 mRNA downstream 103817 32826492 ~ 32843099 (+) False LOC110486141
XM_021557521.2 mRNA downstream 103817 32826492 ~ 32843099 (+) False LOC110486141
TU1328699 other upstream 604706 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 1595762 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 2884143 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 3220537 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 3344492 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1329888 other downstream 506438 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 517278 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 1067965 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1958513 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 3267181 35989856 ~ 35992600 (+) True G1169121

Expression Profile