RNA id: XM_021557519.2


Basic Information

Item Value
RNA id XM_021557519.2
length 3133
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110486141
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 32826492 ~ 32843099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAAATTGCACACATTAGGCCTATTTATTATGCGCACTGATTTTCCGCGGCAGGTTCACGTGAGATGCAACATCAAAGGCTTTATTGCGTTATACACACCATCAGCAGCAACGCCTTGCAAATGTCAAGGCGTTGCAGAAAGAGGAAGATCAAGTGAGCTACACGACACACACAGTCAAGTGcttgcaagttcCCACAAGTGCCTCACGGAGAGGTTTCAGTCGCCACGGGTTTCCAAAGAAGACAGTTGCGCGCAAAGGGGAATCATGAAGGACCAGAGCTGTACTGATGAAATTACACAAATCTTCCAGGAGGCTCCGTCGGCGAGACGAGCCCTGTTGGACAACTACGACAACCTGATGAAGGTGGCTGAATACTGCGAGAGCAACTACCTGCAGGCAGGTGCGGATGCGGTCAAGGCCCTGGAGGAGACTAAGAACTTTACCACCCAGTCTCTGGCCAGTGTGGCCTACCAGATCAGCACCCTGGCCTCCAACGTCCTCAAGCTGCTAGACGCACAGAACTCCCAGCTCAGACACATGGAGTCTTCTGTCAACCTCATCGGACAGACAGTGGACATGCACAGAGAGAAGGTGGCCCGGAGAGAGATCGGGGCTTTCACCACAGCCAAGAGGGTTCCCCGCAGCCACAAAATAATCCCCCCGGCAACAGGCAAGGAGCCCAAACCCAAGTACACCCGTAGTCCCATCGCCTACTCTGACCTGGACACACTGGGACATGGCATGAAGGATTCTGGTAAGCTGATGGGGAAAGCAGGGTCATCAAAACGCAAACATGGCGGCACAATCAGcagGAGCACTTCCAGAGCACCCCCAGAGCCTGTCCAGTGTCCCATAGCCCCCTCTCTGTCTCGAGGGGCGTCCCTCACCTCTCTCAATGATCGCTCCATTGGGTCCAGCTTCGGCAAGGCCGTGCCTCCCCCCGTGGTCCCCGGCTGGCCCGCGTCACCTGACTCTGACATCATCACCACCCTGCTGGAGGAGGCCCCGCCCCCACCACCGCCCCTGTCTCTGATGGAGGATGGTGACGCCGCCATGACAGCTGCggcccctcttcctcctcctcccatggCGCCTCCTGCCTCCTCTCTGGATGTCCCTCCGCTggcccccaccaccacaaccagcACCCCTGAACCTGCCCATACCAGCCTAGCCTGcatcccccctccccctgccccACCCCCACTGGAGACTGTGGCTGAAGAGAACAGCTTCCCGCCCCCAATGCCACCACCATCTGACGAGCCTCTCCCGCCACCAGCCAGTGAGGGCCTGGAGCTCCCTGACCCGCCCCCTCCACCGAGTGATGAAGTGGATGAAGCTCTGCAGCCCAGGCGGCCTCGTGTACGTCGTCACCCCCCCAGCTCGCGCTCCATGTCCCTCAGGGTCCGCACGGGCCCTAGCTCTCGCTCGCTCTACACTCGCTCGCTCTTCCTGCCAACCATCCAATCACTCAtgatccctcctcccccttcataCCCTCCTCCTCTCGCCCCTCCCGTGTCGCTGAGCCCCCTGTCCAGCCTGCCCGCCCGCCTTGATCACCTGGATCTGGTGATCCCAGCCCCGCCTCCTCCACCTTTTAGCGACAGTGTGGGTGGCTTCGATGATGTCATGCCACCCCTACCTCCCCCTGCTGATTATGACACGACTGGCCCTACAGACTTTTTAGAGAAAGTGGTGGCGCTGTACAGCTACAACTCAGGGAAGCCTGGCGACCTGATGTTCCAGGAGGGAGAAGTCATCTACCTGATCAAGAGGAATGAAGACGGCTGGTGTGAGGGAACGCTCAACGGAGTAGAGGGATTCTTCCCTGGGAACTACGTAGATTCCTTCACCAACTAAGATATTAGACcacttaaaggtagactcagcgatatgacgtatatgcagaaagtaaacagcacaGTGGGTCAATTTCCGCGACAAGTAAGAGTTTTGAAGCCCGAGGCTCAACTTGTCCTCTGTTTTGGTCTTGTGGCTACCTTGTTGTAAAAGCGTGAAGCGCACCCGTGCACGTGCGCAGATACCGTGTGAGAGCGGAGTCGTGCATCTCGGCTTATCGcaatatctgcggtgctgctcgtggcaatGTCATTTCGCTTAGTCTACCTTTTTAATATGAAGTGAAAGTCGGCTCTGTCCAcaaacaacccctaaccctaaaccctaggtCTACCTAGGCACTTTATGTTGATCAGGAAGAATTGAACGGGTGCAAACATACATACTCACATCATTGGTATAAGAAATAACTATTGTAGCTTTATCTGTCCCTTTGATAGGCCAGGTGGAATTTCAATCATATTGCCTGTCAGGTATAGAGTTTGGGGCTAGTGGTTGTTGAGTTGTTTCTTGACGGTGACGTGGTCAACTGTAGAAAGACCTCTACTGACCCCTACTGGTCATAGTAATATGAATGGAAAATAAGGCAATGATGACAGGACTCTGAAATATAGCCACTATATGGCGCGGTGGGCTAGTTATATATTACCAAGAGGGTCACTAGGTAGGACGACTTAATACCTGCTATCTTTCATCCAAGACTAGATCAAATATAAAAAGTCAGCTTGCTTATTAACCATTGAAGGTAGTGAATACTTGGGAAATGCTTTGCAAGTTATACAATAGCTCTATGTCCCGTTCAGTATTGTTTTACAAGTACTGTAGTACCAGTATATGAGCTACTGTTGTGCTCAGTAGGACAAGCCCTAAACGCTGTATAATGATGTGGTAAAGTTTCTtccgtttttttttgttgtcaatgtGACCAGCCACTGTTTGCTGCTGCAGTTTTTGGCTCTGCAGGATGATATTGGTCTCTTAATTAGACTTGCACTAAtatattttgtaatattcaaaCTCAGATGAAATAATATATGGATTATAGAGAACATTTCCCGGAGAAAATATGTGTATGAATTCTGTTACGAGGTGAAAATATTTGACTGGCAGTGAGGTCATATGAGATTGAGAAATGTAAAAGTGATTTTAAACTTGTTAATGTGGTCAGTTAGTTTCATTTTTGATGTTTAGTGTATCCTTTGAGGTTGAACAATGTTTCATTTTACATGTCTGTCAATAAAATGCGTAGCTTTTCCAAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1329566 lncRNA upstream 7290 32818995 ~ 32819202 (+) True G1165902
TU1329563 lncRNA upstream 11625 32814618 ~ 32814867 (+) True G1165899
TU1329557 lncRNA upstream 22259 32803893 ~ 32804233 (+) True G1165893
TU1329549 lncRNA upstream 38302 32787984 ~ 32788190 (+) True G1165885
TU1329493 lncRNA upstream 112687 32713241 ~ 32713805 (+) True G1165840
TU1329577 lncRNA downstream 10158 32853257 ~ 32853636 (+) True G1165913
TU1329578 lncRNA downstream 10824 32853923 ~ 32858140 (+) True G1165914
TU1329762 lncRNA downstream 62346 32905445 ~ 32905782 (+) True G1166077
TU1329881 lncRNA downstream 149849 32992948 ~ 32993307 (+) True G1166187
TU1329882 lncRNA downstream 150435 32993534 ~ 32993737 (+) True G1166188
LOC110485150 mRNA upstream 469 32825222 ~ 32826023 (+) True LOC110485150
LOC118938068 mRNA upstream 1957 32820046 ~ 32824535 (+) True LOC118938068
XM_021556157.2 mRNA upstream 103816 32714937 ~ 32722676 (+) False ifn2
XM_036939702.1 mRNA upstream 103816 32715471 ~ 32722676 (+) False ifn2
NM_001160505.1 mRNA upstream 103817 32715439 ~ 32722675 (+) False ifn2
XM_021557525.2 mRNA downstream 197 32843296 ~ 32845896 (+) False si:dkey-283b1.6
XM_021557527.2 mRNA downstream 227 32843326 ~ 32845896 (+) True si:dkey-283b1.6
XM_036940799.1 mRNA downstream 158257 33001356 ~ 33230495 (+) False LOC110486146
XM_036940800.1 mRNA downstream 329344 33172443 ~ 33230495 (+) False LOC110486146
XM_036939741.1 mRNA downstream 406133 33249232 ~ 33255122 (+) True LOC110486149
TU1329495 other upstream 104030 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 715759 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 1706815 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 2995196 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 3331590 29494362 ~ 29494902 (+) True G1162364
TU1329888 other downstream 386014 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 396854 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 947541 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1838089 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 3146757 35989856 ~ 35992600 (+) True G1169121

Expression Profile