RNA id: XM_021556219.2


Basic Information

Item Value
RNA id XM_021556219.2
length 1732
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC110485152
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33296758 ~ 33304976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTTTCCAGCCTCTCAGAAGTCACGATGTGGGTTGACGCGCACAGCAGAGCGCACAGCGCAGCAGTAACCATCTACTGTAGCAGGTGGTGTATGTGTGGTGAGGAGATTTTATGCTTCAACGCTCCTGTGCCTGCGTATGACGGCTTGATATGACAATTTTAAGACAATAATAGGTTACGCTTTGGTAACGGATCAAATTGTCCCTCTTTATATTTACAGTCGTGTTTATTTCAACTAGATCGCGGGGAGCGGAGAGGCAACAACTATCGGAATTGAATGCTGGTAAGCAGGCTCCAGTCCATGGGGTTGTGACGCGGATTCTCCGGCTGCGCTGAATTGCAAGCGGGTACTGTAAACGCATTTGAGATATGGACGCTGTTCTGTGAAGCATGCTGACAAATGTTCTTCTCCCAGACAACAAAAGCTGAAGTGGCCGGCTGGTTGGTGAAGCTGTGACCTATGCAGGGTTGTCTTGGCTGATGGTCCAGGGGCTGTGTCCTTCCAGGAGGGTATGCCTGTATCCCACCATGCCGCTGCTGGCAGAGTGGCTGCTGTGCCACTCCTTGGTGGCATGCCTGTTGCTGCACAGCCTGGCGCTCGGGGCCACCACCGCGGGCCTCCACGGGGCAAACACCGGCTGCTCCGAGAGCTGCTACTGCTCCGAGATGGCCGACGGCGGGAGGGTGGTGCGCTGCAGCAACATGCACCTGGCGGAGGTGCCGCATGACCTGCCCAATGACACTCGCCGACTTTACCTGGACGGTAACCTCCTTACCACCATCCCCGCCGACGCCTTTGCAGGGTTTCCGTTACTCAACGAGCTGGACCTCTCCCACAATGAGCTAACTCAGATGGAGCCGGGGGCCTTTCGGGGTCTGGTCCCCTCTCTCAGGAGCCTGGACCTATCCTCTAACAGACTGACCACCCTGGAGCCCGAGGTCCTGGGGGGCCTGAGGGCCCAGGCCAACCTCACCCACAACCCCTGGCACTGTGACTGCCGCCTCCAGGTGGCTATGCCCCGGCTGGATCTGGAACCGGCCTCACTGGCTGGCGTGGTGTGCCACACTTCGGAGCCCAAGGACGTTGGCATAGATACAGGGGTGCCCTTCATCATGATGGCGGCCGACCTGGACCTGTGCGCAGGGCTCAAGAGGACCACGGACGTGGCCATGCTGGTGACCATGTTCGGCTGGTTCGCCATGGTCATCTCCTACCTGGTGTATTATGTCAGGAACAACCAGGAGGACGCGCGGAGACACCTGGAGTACCTCAAGTCCCTTCCCAGCAAACTGGACAGGCCAGAGGAGTCCTCTAAACTCAGCACAGTGGTGTGAGAAGTAAATTACCAGACCTGGGTCAAAATGCATTTTGTCAGGTACTTTCAAATTCTGGAGAAGTGCCTGATTTAGCTTGATTGCTGTGCAAGGAGGTagagtttgcacttttgggatgaTTCTTAGGCAGTAGGTAAGCTAAATCAAGCGCACCTGTAGTATCTGAAAGTATTTGACATATATTTACCTAGGTCAGGTAGAGACACAGGAAATAACAGCCTAACATGTCAAAGGGATCATAAAAGGAAATGCACAAACTTGGAAATAGACCgggatactactgtactgtacaggttTTCACCAGTAATCCATTGGAAACGCAATACCTCACGGTAACATTTCATTCAAACAAATTCACACTCTTTGATGAATCGTCATTAAATgaagactccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1330027 lncRNA upstream 47550 33248468 ~ 33249208 (+) True G1166318
TU1329935 lncRNA upstream 169365 33088583 ~ 33127393 (+) False G1166240
TU1329934 lncRNA upstream 169365 33126400 ~ 33127393 (+) True G1166240
TU1329937 lncRNA upstream 198265 33097845 ~ 33098493 (+) True G1166242
TU1329933 lncRNA upstream 208912 33087515 ~ 33087846 (+) True G1166239
TU1330076 lncRNA downstream 5093 33307519 ~ 33307823 (+) True G1166354
TU1330079 lncRNA downstream 10461 33312887 ~ 33313192 (+) True G1166357
TU1330086 lncRNA downstream 16773 33319199 ~ 33319408 (+) True G1166364
TU1330092 lncRNA downstream 29983 33332409 ~ 33332663 (+) True G1166369
TU1330315 lncRNA downstream 43535 33345961 ~ 33346185 (+) True G1166571
XM_021557537.2 mRNA upstream 11951 33271079 ~ 33284807 (+) True LOC110486148
XM_036939741.1 mRNA upstream 41636 33249232 ~ 33255122 (+) True LOC110486149
XM_036940799.1 mRNA upstream 66263 33001356 ~ 33230495 (+) False LOC110486146
XM_036940800.1 mRNA upstream 66263 33172443 ~ 33230495 (+) False LOC110486146
XM_021557525.2 mRNA upstream 450862 32843296 ~ 32845896 (+) False si:dkey-283b1.6
XM_021557539.2 mRNA downstream 18209 33320635 ~ 33327034 (+) False LOC110486150
XM_021557540.2 mRNA downstream 18282 33320708 ~ 33327034 (+) True LOC110486150
NM_001195184.1 mRNA downstream 33021 33335447 ~ 33339722 (+) False csf-3
XM_021556174.2 mRNA downstream 33264 33335690 ~ 33339722 (+) False csf-3
XM_036939716.1 mRNA downstream 33589 33336015 ~ 33339727 (+) True csf-3
TU1330025 other upstream 47550 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 66275 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 574296 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 1186025 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 2177081 31114311 ~ 31119677 (+) True LOC110486104
TU1330567 other downstream 488214 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1378762 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 2687430 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 2865202 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 2867470 36169896 ~ 36171571 (+) True G1169208

Expression Profile