RNA id: XM_021556174.2


Basic Information

Item Value
RNA id XM_021556174.2
length 1908
RNA type mRNA
GC content 0.47
exon number 4
gene id csf-3
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33335447 ~ 33339727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTGTCTCCAGGCATTTTATTGTGCATGGCTACTGCGTACCTCAACGCACTACATTTGACACGCGCCCCTTTCTTGCGTAATGTTCTGCGGGGGCACTGGCTGTATCTCAGTTCAACTTGTTCAGAATCTGTATCGTCATAGAGTCGTTCTGCAGCTGTTTTTTCTTTCTCCAAGTTGTAGGTCTGCTCTGCTGTTTAGCTTTTCTGGTCCGGTCCGCACACCTTCCAGAGAGGTCAATGGACGCAAGGAGTTTGGTCGAAAAAATATTAGGCAACATCCCCATGGTTCACGGGTCTAGTGTCAAAATCCCGGGCCTGACCCTTGACCCGTCCAGCCAGTCTAGGAACATACCGTACCAGTCCATGGTGACCTCCCTGGGCATCCCCGCAGCACCAGAACTAAAGACTGTCTGCAGACCCCTAAACCAAATCGACTTCAccctgGAGGTGTGTCTGAGCAGTATGTCTGCGGGGCTGCAGCTGTATCAGGATGTGCTGGGTGTGCTGAAGGAGCGTGTGACCACTGAAAAGGTGACAGGACTCCTGGCTGACATCAGAGACCTGCTGGCCCAGGTCAACAAGATGCAGGAGCCGGGCCAGATGAGCAGTGTGGCCCAGTACGAGGCCTCGGGATTGGCCTCACGCCTCCCAGGGGACTACGAGGTTCAGGTTGCCACTCATTTTATCCTGTTGCAGCTCCGTGACTTCACACAGAACCTAAAACGCAGCCTGCGCAACGTCGAACACCTGACTTCCAGGCCAGGACAGAGCGGCTGAACTACTCCTTTTCAGGTCAGGACAAAGGGGCTGGGCTGCACTCTACAGCGGCAGCAAAACCTGTGCAGACATGGATGGAGGACCGGAGTGGGGTCGTCCGTGCCAGAAACCTATTGGACTCCTCAGGAAGCTCTGTCATTCGAGCCTGCTTCAGTCTTTCTATCTATTCTGTCAATCAAGGTCAAACGGGACATTCGAAAACATGAAGCAAGCGGAGCACTTTATCTGAGAGAGAGGGACGCTACACAATTGGTTTTGGTGCCATCCCCTATCTGCCAAGATCTGGTCTGGCCTTGTTCTATCTGTTCCCCATCAATTGGTACAATAGCAACTGAAGGACTGAGTACCTGCGTTtcttcatctctttctccccatGAGGGTTTTGTTCTTAGCTTGTCCTGCCACTCTACGACACCTCTGACTTGCTGTCTCAGGTTTTCCTTGAGATAAAGCAACACTGATAGCTGCCAGATAGTGGCAAGTCCCCGCCTGCACTCCCTCTAACTCGGATGTGAGATAAACCATGGCCACTGTTTGATTTGTCTGTTGAGTCTCTTAGATACTTATTTatacttaaaatatatatatttatatttatgaaGTGCTGGGATATTTGTTTAtgtattttaatgtatttggTTTGCGTATGCAtgtctttatttatttaatgtatttatactgtatgtgtttttatTGATTGATAGTCATCCCTAGAATAGTTTTCTGGATGGGTGTCAAAAGATTTGTATTGTATGTGGTTTGGCAGAGAGGTAAAACAAATGTTATATACCAGGAGCTCCGATCTCCTTCCCtttgatttatttatatattatagTTTTTTTACAGGACAGTAGGAAGTCGGGAGACATGTATAGAACAAACAGTGAGGAAGGGTTTTAGACGAGCGGCCGAGTTGCCTTGAAGGCAtgttgtaacggttttgacttgaggttgtTGTTTGTAGGGGTGCCAGTTAGGTTGTGCCTACAAGAGAAAATATTGCTTTCTCCTTTTTGTTTTGTGAGGGAATGAGTCCCgtctggtccgtcaagtctacaccaatacaaaggacaCATGGAAAAGGATGGACATACAATTTTCATGAACCATTAAAAACATTGGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1330092 lncRNA upstream 3027 33332409 ~ 33332663 (+) True G1166369
TU1330086 lncRNA upstream 16282 33319199 ~ 33319408 (+) True G1166364
TU1330079 lncRNA upstream 22498 33312887 ~ 33313192 (+) True G1166357
TU1330076 lncRNA upstream 27867 33307519 ~ 33307823 (+) True G1166354
TU1330063 lncRNA upstream 30714 33302047 ~ 33304976 (+) True LOC110485152
TU1330315 lncRNA downstream 6239 33345961 ~ 33346185 (+) True G1166571
TU1330331 lncRNA downstream 9098 33348820 ~ 33352461 (+) False G1166573
TU1330333 lncRNA downstream 9098 33348820 ~ 33366167 (+) False G1166573
TU1330334 lncRNA downstream 9098 33348820 ~ 33358178 (+) False G1166573
TU1330332 lncRNA downstream 17623 33357345 ~ 33358178 (+) True G1166573
XM_021557539.2 mRNA upstream 8656 33320635 ~ 33327034 (+) False LOC110486150
XM_021557540.2 mRNA upstream 8656 33320708 ~ 33327034 (+) True LOC110486150
XM_021556219.2 mRNA upstream 33264 33296758 ~ 33302426 (+) False LOC110485152
XM_021557537.2 mRNA upstream 50883 33271079 ~ 33284807 (+) True LOC110486148
XM_036939741.1 mRNA upstream 80568 33249232 ~ 33255122 (+) True LOC110486149
XM_021557554.2 mRNA downstream 298087 33637809 ~ 33653835 (+) False LOC110486158
XM_036940808.1 mRNA downstream 298087 33637809 ~ 33653835 (+) False LOC110486158
XM_036940809.1 mRNA downstream 298325 33638047 ~ 33653835 (+) True LOC110486158
XM_021557562.2 mRNA downstream 430717 33770439 ~ 33783009 (+) False LOC110486161
XM_021557563.2 mRNA downstream 430717 33770439 ~ 33783009 (+) True LOC110486161
TU1330025 other upstream 86482 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 105207 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 613228 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 1224957 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 2216013 31114311 ~ 31119677 (+) True LOC110486104
TU1330567 other downstream 450918 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1341466 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 2650134 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 2827906 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 2830174 36169896 ~ 36171571 (+) True G1169208

Expression Profile