RNA id: XM_021557602.2


Basic Information

Item Value
RNA id XM_021557602.2
length 3515
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110486182
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34423433 ~ 34429172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCACTCCGTTTTATTATAGTATttgtaaaacaaatatatataatcCTTAGGTGTATATTTTGACGCAGGGTCCCCGTGCGCCATGTGAGCGCTGTAGCACAGAGGACGGCTCTGCCAGCTCCGGAGCGTGAGAGGAGTGTTCACACTAATAAACACTGCAGCGGCTAAGCATGGTCACCGGGCCTGTCCACGTGACAGGGGTGCTGTTACGACCAGGCATGGGGTCCGATCCTCTGCTGTTTTCGTGGAAAAAAATACTTTAGAGTGTAGCATCACTCAGTCATAGGCTACATCAATGTAAACACTTATCAGAGGAGCGGTAGAGAGACATGTGAGGGAAGAAGCGCAATATAATCTTGGATTTGTATATCTCCGTATTATAGGCCAAGGCTATAGCCTATTCGAAAAAAACTACCTAGCACAAGgcataactttttattttttaatgtttCTTTGTATTCATATGTTATTGTTAAAATATTATAGTAGGCTATTGCTTTTTTGCTGTTGAAGTTGGCCTGTCCATGCATGCTTATGAAACACTGTTTACTAAAAACAGGTGTTTCAACTGAATGTTACTTTACAAACAATGATGGGTGGGACTGACACCCGTTTCAGTTAGGAAAGTATACCATCTAGTGGTAAAAGAGCGACATTGATCCACAGTGACACCAACGTAGCAGCCTGTGGTCTCTAGTGTTGAGAGATATTAACTCATTTATAAGAAAAACAGAAACATGTAATGTTTATCTTCAACGAATCTTCCATCAACATAACTCCCTTACAAGATAGGGAATTTGGGGCCCCAGAATTGTCCTCTCCCCAAATAGAGAAGAGCCCAACCTAATATCAAGCAAGCAGGTGAAATGCCGTAATGCTGTATCCATTCCacagtactttaaaaaaaaaatccttgttGGTGACTGAGCCAGTTGCCAATAGGTTGCACCTAGTCCGCTTGTGAGTAGAGAAATAACAATTTCATCATGGTTGCATGATTGTACAAAAAAATATTAACAACAACAAATAGCAACAATCGTTAAAATTAGGTAGGAATATGCATTTGTCTTGGCCTTTTTATCCTTCAGAAATCCTCTGAAGTGCAACCGCTCGCTAATTGACCAATCAGAGGCGAGCATACGGGGAACGCATGCGCAATATCATTATTTTTAAACGACCTGAGAAGGTGGGCATCAAGGCGATAGGCTTGCATGGACATCTAGACAGCCCACTGTTGAGGAGAAACGGCATCCACGGTGTGAGATCAAGCTCTTTGTGCCACCAACGCCCCTGTCAGGAGGACATTGGTGGGCGTTGGTTGGCAAGGGTTCTGGTTGTAGGGTTGCCACAACAATGACATCCACTGTGTTCACAAGTGGAGGATATAAGCTGGACACAGTAGGGAAGATTGATTTGGTCAAAGCTCCAGCGGGAGGAACACCTGATTCCTTCAGCATCCTGAGGAGGGAGCCAAGTGAATATGTCATCGGAGTCCCAAACGTGCTGGGCAGTATCCACAACAGCAGCGGCCAGCAGCTTCAGGGGAAAGCCAAGGTGGTGCCAGGACAGGGACAGGTTACCTGCAGGCCTGGATCTGGACAGAACCTTGGGCTTGGGTCGGGGCAAGAGGAGAACTGGGTGAGCTTTGGAGCCCAAACTCCCCAGGGCAAACCGATGGGGGGCGAAGGCACCACACCAGTTAAGAGCAAGACACTACTAGGACAGACAAACAGCAATATGGGCAAGACGGACCTTGGAGTGCACAACACTATCAAACAGCCCCGGGACGATGTAGTGGGTGGCAGGGAGGTCAGAGGGGCTGCTACGGCAGCAGTCATGGGGGCACAGTCATCAGAACACAGCCCAGACTGCAAAAGAGGGAATATTAGGAAAGGGCCTGGTCACTCCCCTACACAGACCAGCTGCATACGCCAGATCCTCCTCCTCCAACTGGAACTCAttgaacaacagcaacagcagctcCAGTCCAAGAGTAAGGAGATAGATGACCTTAAAGCTGAGAAGGAAATGCTCATGGCGCGGATCGAGCGCATGGAGCGCCGTCTGCGGCTAGGTAAGAAGGATGGGTGTGACCAGCACCCCACCCACATCCCTAGCCGGCAACAAGACAAGGCAGCAACGCCAGGGACACCAGAGGGGCAGGGGCTGTCTGAGGGCCGCAGCAACCATACACCCCGAACGCTGAATTTTGGCAGAGGAGGCAAGGGTCACAAACGGCGTTTCCTCTTCCAGGACCCCAGGGCAGCCAAACGACGTGCCCAAGCCAAGGCTTCCCAGTCCCCACACAACGAGGCACTTCTCCCCAAAGAGGAGCCACTGGACGGAGGAGAGTTTTCAGATGGGTCTCCTGGAACCAGCTCGGCTGCCACTGAGGAACTGGACTACCTGTCCACCACAGACATGTACCTGTGTCGCTGGCATGTGCCTCCCCCGTCACCAACTTCGCGAGAGCCCTCACCCAAGAAGGAGGAGCCTGTGGCTATTCCCTCATGGAAGGAAAACCTTATGGAGCccctaggagaggaggaggcatcTGATATCCCTGAGAATCTGGATGACAATGTCTTCCTGAAGCGCCACTCGAAGCATGAACTGGatgagaagagaaggaagagATGGGACATCCAGCGGATCCGTGAGCAGCGAATGTTCCAGCGACTGCAGCAGCGCATGAACAAGAGGAAGGGTATCCAAGAGAGTGAGCCAGAAGTGTTCTCCTTCTACCCAGAAGCTGAGGATGtggAGTACCTCATGATCACCCCCCACCTTCCAGTGGTGGTGTTTGGACGACCTCTGCCAAAGCTGTCAAGACGGATCTTTGACCTGCCCTGGCTGGATGAGCGGAGCCGCTGTCGAGTTGAAGTGCCCAAAAAGCAGACCCCCCACCGGACCTGCCGTAAATAAATCTGTCCTTTCCACCTGAGTCCAAGAGAGGAGACTCCGGCTGGATTGGTGCCAGGCAGGACTCCTCTGTGTAAACGTCTGCCTTGTTATTtgggagaggaacacacacaggaggTTGGGGAATTGCATGCCACAATCCCCTAAAATCAAAGGATGCACTGTGCCACAGTTTGGACATAGTTGCTGGACTGCAGAACAGATCCTATAGTAGGGCTGGTTTGGAAGAAGATTGAGGGTGGTGTGGACTATCCAGGAAGAGCAGACATGTTTGTCTCCTCTAGATTCCCACTGGGTTCATTTGAGGACAGTTTTCCTCTTTGTCACTTCACCCCAAAAATCCCCAAGCTAAAGTTGTACAAACTGTTGACGTTGTCATTCACATTGACATGCCAGAATGGCTGACTCCCATCTGTATGTGATTGCTGTTGCATCCTATAGAAAGGAGATCTCCTGTTGGAGAtaaaaggggaaaaaaaacatttcacagtAGGAGAGTGAGATGGTTTGAAAGCGCTTCAGCAGCACTTATGGTTTGTGTTTCAAACAAGATGttgaaatttaaaaaacaaaaatgcTTTATGAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1331546 lncRNA upstream 32433 34390733 ~ 34391000 (+) True G1167662
TU1331540 lncRNA upstream 39123 34384014 ~ 34384310 (+) True G1167656
TU1331537 lncRNA upstream 45317 34377859 ~ 34378116 (+) True G1167653
TU1331536 lncRNA upstream 45812 34377398 ~ 34377621 (+) True G1167652
TU1331532 lncRNA upstream 49566 34373324 ~ 34373867 (+) True G1167648
TU1331578 lncRNA downstream 63273 34492445 ~ 34492806 (+) True G1167692
TU1331580 lncRNA downstream 71534 34500706 ~ 34500929 (+) True G1167694
TU1331581 lncRNA downstream 72428 34501600 ~ 34501823 (+) True G1167695
TU1331557 lncRNA downstream 73339 34502511 ~ 34505076 (+) True G1167671
TU1331554 lncRNA downstream 86189 34515361 ~ 34515593 (+) True G1167669
XM_036940842.1 mRNA upstream 51204 34367297 ~ 34372229 (+) False LOC110486179
XM_021557597.2 mRNA upstream 51204 34367887 ~ 34372229 (+) True LOC110486179
XM_021557594.2 mRNA upstream 57144 34309454 ~ 34366289 (+) False LOC110486178
XM_021557596.2 mRNA upstream 57144 34309800 ~ 34366289 (+) False LOC110486178
XM_021557595.2 mRNA upstream 57144 34309802 ~ 34366289 (+) False LOC110486178
XM_021557600.2 mRNA downstream 161 34429333 ~ 34443615 (+) False LOC110486181
XM_021557601.2 mRNA downstream 164 34429336 ~ 34443615 (+) False LOC110486181
XM_036940843.1 mRNA downstream 472 34429644 ~ 34443615 (+) True LOC110486181
XM_021557604.2 mRNA downstream 28936 34458108 ~ 34491094 (+) False LOC110486183
XM_021557605.2 mRNA downstream 28936 34458108 ~ 34491094 (+) True LOC110486183
TU1330567 other upstream 619768 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 1174225 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 1192950 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 1700971 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 2312700 32001751 ~ 32110733 (+) False LOC110486134
TU1331612 other downstream 252016 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 1560684 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 1738456 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 1740724 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 1908921 36338093 ~ 36339356 (+) True LOC110486232

Expression Profile