RNA id: XM_036940850.1


Basic Information

Item Value
RNA id XM_036940850.1
length 2949
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110486187
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34643750 ~ 34678134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAACATCTAAAAATACAAGGAAGCAACCTAAAGTGATAACTAAAATGGCAGTGGTTTGACCTAGCTAACAAAAGATCGAGGCCGATGAACTGGTGACGTAACGTCTTAGCCACGAGGCTTGGGAACCAAGCAAAACCCTGCGCAGGACGCTCATCAGCAAATTACATGGAAATAAGGTTTTAGAAAATGGTCCAACCAAGATTGGGTGGCTCATCTGGGCAGATCTACATTTATCCGGAATTGAGGAAGTGCAGGAAGTGATGGCCCAGATGTCTGGGTTGGATGGACTGTGCTCACTCAGTGGACCTGAATGATAAACTGAGTCGCCTAAGGGAGCAGTGTGCGGCGATGGTCCTGAAGAACAAAACAGAGGCTGAGAGCTGGTTTCAGAGCAAGGTGGACAGCATGAAGACCCAAGTGACCATCTGTTCCAATGGGTCCGAGGTCAGGTAGACAGAGATAGATGACCTAATGAGAATTGTCCAGAACCTAACTCTGGAGTTGCAGCTACTGGAGACCCAGAATCTGTCAATGGAGAGCGACGAGATGGAAGTGAACGAGCGATACAGTGTTCACCTCAATCGGCTTCAGCAGCACTTGGAcagcctggaggaggaggagctgctgCAGCTATGTACAGCCACAGAGCAGCAGGCGGTCCCAGTACCAGATGCTACTGGACATCAATATCAGGCTGGAGCGGGTGATTGCTGAGTACAGGAGGCTGCTGGATGGAGGGGGAGCCAGGAAATCAAGCGCCAACGCCATGGCTAGTGTCACATCACATCTTCATGCCAATTCAGAGTTCCTCCATTAGCGTACCAAGAGCAAGTGTGCCAAGTATTAGTGAGACCTCAAGCAGTTTGGAAAATGGAGGACAAGTGGTAGGTGCAGCCATTGGGGGCACAGGTTACCCGTGTGCAGAAAGTATCTCTGTACAACGCCTTTGATAAAAGAGAAGAGTACAGTGTACACAAACTACTAATCAGGTTAGCACTGTAAAAGAGTTTAGAAAGTGGGCACCAAGTTGAATATTCAGAGAGTTGCGCCAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAGCACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGTTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGTACAACATGTTGGACCACTGATAACTAGTGCAGTAAGTGGACATACGATAACTAGTGCAGGAAGTGGACATATGATAACTAGTGCAGGAAGTGGACACATGATAACTGGTGCAGGAAGTGGACATATGATAACTAGTGCAGGAAGTGGACACATGATAACTAGTGCAGGAAGTGGACATACGATAACTAGTGCAGGAAGTGGACATACGATAACTAGTGCAGGAAGTGGACACATGATAACTAGTGCAGGAAATGGACATACGATAACTAGTGCAGGAAGTGGACATACGATAACTAGTGCAGGAAGTGGACACATGATAACTAGTGCAGGAAGTGGAGAATGGATGGTTTATGGTAGAAGTACAGGAAGACTCATTGGTCCAGATAGCGGAGGCAGACTCAGTGATCCAGATAGCGGAGGCAGACTCAGTGGTCCAGATAGCGGAGGCAAACTCAGTGATCCAGATAGCGGAGGCAGACTCAGTGGTCCAGATAGCGGAGGCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAGCGGAGGCAGACTCAGTGGTCCAGATAGCGGAGGCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAGCGGAGGCAGACTCAGTGGTCCAGGTAGCGGAGGCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGATAGCGGAGGCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGCGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACTCAGTGGTCCAGGTAACGGAGTCAGACCTTTAATACCTTTAAATGACCAGTATCACAATGCACCGTCATGCTAgaaaacatgaaaacagcctaactagctctgctacggtgagtaaaatggtcagagtgaagtgttctctcatttgtgtctggaagtagctagcaagttagccaactttagccagttagcttgagtGCTAGACTGCAgctgtgaggtcagaacgctctgATCAACGCTACTCTGTCAGAGTGTCCAGCTGTGTAGCAAAAACCAAAACTTGCACCCCTTGGAGTCACAAGGATCGAGGTGGGGAAACGCtgccataaccccactgccaccatggggaactctgttcacaacgtttaCATCAGCAAAtcactcgcccacacaatgccatagcactgtctgccatctgcccagtagttgaaaccgggattcattcatgaagagcacacttctccagtgtgccagtggcatttgcccactgaagtcagttacgacgctgaactgcagtaaggtcaagaccctggtaagGATGACAAGCACGTAGATGAGCTTCCCtaagacagtttctgacagtttgtgcaaacccacatcagctgtcctggtctcagacaatcccacaggtgaagaagccggatgtggaggtcctgggttggggtggttacatgtggtctgtggttgtgaggctggttggacatactgccaaattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1331601 lncRNA upstream 107157 34535322 ~ 34536593 (+) True G1167712
TU1331556 lncRNA upstream 117421 34522215 ~ 34526329 (+) True G1167670
TU1331560 lncRNA upstream 122823 34519314 ~ 34520927 (+) True G1167674
TU1331552 lncRNA upstream 127192 34515759 ~ 34516558 (+) True G1167667
TU1331554 lncRNA upstream 128157 34515361 ~ 34515593 (+) True G1167669
TU1331738 lncRNA downstream 20842 34698976 ~ 34699211 (+) True G1167831
TU1331844 lncRNA downstream 174636 34852770 ~ 34852974 (+) True G1167931
TU1331846 lncRNA downstream 176561 34854695 ~ 34854931 (+) True G1167933
TU1331645 lncRNA downstream 184010 34862144 ~ 34863493 (+) True G1167741
TU1331847 lncRNA downstream 193688 34871822 ~ 34872185 (+) True G1167934
XM_021557604.2 mRNA upstream 152656 34458108 ~ 34491094 (+) False LOC110486183
XM_021557605.2 mRNA upstream 152656 34458108 ~ 34491094 (+) True LOC110486183
XM_021557600.2 mRNA upstream 200135 34429333 ~ 34443615 (+) False LOC110486181
LOC110486188 mRNA downstream 2775 34680909 ~ 34687670 (+) False LOC110486188
LOC110485154 mRNA downstream 92871 34771005 ~ 34775251 (+) True LOC110485154
NM_001124457.1 mRNA downstream 104644 34782778 ~ 34844267 (+) True LOC100136181
XM_036940853.1 mRNA downstream 216637 34894771 ~ 34902807 (+) False LOC110486194
XM_021557615.2 mRNA downstream 216650 34894784 ~ 34906048 (+) True LOC110486194
TU1330567 other upstream 840085 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 1394542 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 1413267 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 1921288 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 2533017 32001751 ~ 32110733 (+) False LOC110486134
TU1331612 other downstream 3054 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 1311722 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 1489494 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 1491762 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 1659959 36338093 ~ 36339356 (+) True LOC110486232

Expression Profile