RNA id: LOC110485154


Basic Information

Item Value
RNA id LOC110485154
length 2755
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110485154
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34771005 ~ 34775251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTATATAAAGATAGGTTTACTGTTGTCCTATCCAATGTATTTCACCTCGAAATACCAACGTCTCTGCGTAAGCACCTGCAATGCCTGTCAACCttctactcttcctcctcctcttcctccctgtttGTCACAGCTGCCACACTGGCTCCTTCACCGACCGCCAGAAGGCTCCGTTCGTCACCCGGTCACAACCTGGCCGGAGAGGGTTTTGACATTGTCAAGATGCAGACCTCCGGCACCTTTGTGGTGGATGTGCGGAAGTTCATGGTGGGTGGACACGACGGTAACTGCACCCTGTGCACCAACACTCTGGTGGACAGCCAGGTCCAGAAGTTACCGCTCTCCGTACTGGACTGGAGCACAAAGGTGACGTGTCGTTGGAGCTTCAGCAGCCAGATGTACGAGTCGAGCAGCTCCGTTCTGAAGGAGACCACTAACTCTGCCAGCGTCAGCTGGAAAGCTGGCCTGGGAATCAAGGCCATTGCGGGCGTTGCTGTTGGAGGCGCACACTCCAAAACTGCCATGTTCGCCAGAGACACGTTCTCTTTCACCAGCCATAAATTAAAATGCAAATACTACACCTTCCGCCTCTGAACCCAACCTCCCCTGAGCCAGGAGTTTCAGGACTCCCTAAAAAAAACTCCAGCATGTACACTCACAAGACCGGCCCTGCCTACAGCCATTTCATCGCCATCTATGGCACCAACTACATCCGCAAGGTGAACTTTGGGGGCCGGGTGCACTCCACCACAGCCATACGCACCTGTGAGATTGCCATGAGCGGCCTCTCCCTCCATTCTGTCAGCAACTGTCTGGGGGTGGAAGCCAGTGGCGCCATCAAGGGTGTCACGATCAGCGCCGAGACCAATTAAGTCCCAGAGCAAAAAACTGAAGACAGGCCATAGCTTCGGAGCCACCTTCCCGGACGGCATCACTGAAGTGATCCTCTTCAACTCTGACATTAAGTCTGACTATAAAACCTGGCAGAAGTCCCTGAAGAAGGTCCCTGGTGTGGTGTCTTACCAGCTCAGCTCCTTGCACTTCCTGGCCAGAGACAACCCCATCCTTAAGGCCAACCTGCGCAATGTCGTCAGAGACTACATCCAGAAGTACGCTGTGTCCACCTCCTGCCCTTCTGCTTGCAAGATGGGGAGACGCAACAAAGACTGCATCTGTAAGTGTAGCGGTCACAGGAACGTGGACTCCAACTGCTGCCCCGGTAAACCGGGCGTGGCCAGGATGAATGTGACGGTGGTCCGAGGTACGGGGCTCTGGGGCGACAACGTATCTAAGACAGACGGCCACGTCAAGGTCTTCTACGGAAAGCAAGGCAGTTCCACTCCTGTGATCTGGAACAATGACTTCCCCTACTGGAACTACAGGATTCAGTATGGAACGGTGGATTTGAAAAGTAGACAAGCCTTGAACTTTGAGGTGTGGGACCGCGACCACAGATGGAACGATGACCTGCTAGGAAAGGGCTCCATAACCCCTCAAAGGGGCATGAACCTCAACCAAAGTTTCAAGTTGAAACACGGTACAATTTttgtgtccctgtctgtagttTGCAGCCCCATCCTTCTGTGATCAGTATGCCCCCTCGCCTGGGTCCCAGGGTAGGCTGAGTTATGTCCATGACTGGGACAGTGAGACCGAGACGTTACCCACCCTCTTCCAGGGTTCCCACAGTAAACGGAACAGGACCGGTGCCCTTCATGTTAAATGACTTACTTAattacaatataataataatatatgccatttagcagatgctttttaTCCAAAAGgacttacagtacagtgcatATATTTCAGAGTATGTGACCACCAGCGGGAATCCAACCCACAACCCTCTAACCAATACTCTTGTCATCTGAGCCACATAGGACTATTTACTCCTCTTCACTCCCTGTGGAGCATAAGGCCGCAACAACACACGACATGCCAGACGGTCCTTTGCAgttctctctctgctgcttcaCCTTTGTTACATGAGGCTAATGGTAAATCAGTTCAAAAATATTCATTAAATCTATAGGTCAACCAATTAGCTTGCGTTGAGAAGCTCGGTCTTTCCTTTCCAAGGCGATAAAATGATTCATTGCTTCAGGGTTGCCTCTACATTCGTATCGTTTTTCTTTCTGTCACAAAACAACATTCATTTCTCAATATTGACCCATTTTTTTTCTACAATTCTATGTAATGTCTGATACATCCAAATAGTTGGGGTTTCAGTATTACTCGTATAACCgcgacacacaaaaaaaaacttcTTCAAAGTCATGCGAAAGGAGGGATTTTAGGTCTACTTGAGGCCTGCTTGAAGGGGAACATTACCCAAGTGCTTTTGCTGATTCATTACCACCCAGATGAAGTGGGTGAGACCAATGAGTCTGGATGCATCACTCTGGATGGTtgcaaatggcatcctattccatttatagtgcattaccttagaccaggtcccatagggctctggtcaaaagtagtgcactatatagggaatagggtgccatttgggacgcatactcCGCATTAGACGAAGGTAACAGAAATATGACCACATTCCTCAACTGGCTTGGCAACAGCTGAGAAAGCAAATGTGGCTTACATTTAGTTTtcactgtatttattattttttgttgTATAATTATGTTCCTTTCCTTTCACATTTGTTTAAACTTTGTTAATGAAACTTACATTTGATCATTGAATTTTCTTTTTTCTGCTTGTACTGTCATTCAATAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1331738 lncRNA upstream 71794 34698976 ~ 34699211 (+) True G1167831
TU1331713 lncRNA upstream 86377 34652483 ~ 34684628 (+) True G1167807
TU1331683 lncRNA upstream 110032 34609617 ~ 34660973 (+) True G1167777
TU1331607 lncRNA upstream 126179 34641785 ~ 34644826 (+) False G1167715
TU1331608 lncRNA upstream 126179 34641785 ~ 34644826 (+) False G1167715
TU1331844 lncRNA downstream 77519 34852770 ~ 34852974 (+) True G1167931
TU1331846 lncRNA downstream 79444 34854695 ~ 34854931 (+) True G1167933
TU1331645 lncRNA downstream 86893 34862144 ~ 34863493 (+) True G1167741
TU1331847 lncRNA downstream 96571 34871822 ~ 34872185 (+) True G1167934
TU1331849 lncRNA downstream 99133 34874384 ~ 34874615 (+) True G1167936
LOC110486188 mRNA upstream 83335 34680909 ~ 34687670 (+) False LOC110486188
XM_036940847.1 mRNA upstream 92871 34643750 ~ 34678134 (+) False LOC110486187
XM_036940850.1 mRNA upstream 92871 34643750 ~ 34678134 (+) False LOC110486187
XM_036940851.1 mRNA upstream 92871 34643750 ~ 34678134 (+) False LOC110486187
XM_036940848.1 mRNA upstream 92871 34645290 ~ 34678134 (+) True LOC110486187
NM_001124457.1 mRNA downstream 7527 34782778 ~ 34844267 (+) True LOC100136181
XM_036940853.1 mRNA downstream 119520 34894771 ~ 34902807 (+) False LOC110486194
XM_021557615.2 mRNA downstream 119533 34894784 ~ 34906048 (+) True LOC110486194
XM_021557618.2 mRNA downstream 144080 34919331 ~ 34932630 (+) True LOC110486195
LOC110485155 mRNA downstream 162314 34937565 ~ 34947362 (+) True LOC110485155
TU1331612 other upstream 83355 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 967340 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 1521797 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 1540522 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 2048543 32715256 ~ 32722462 (+) True ifn2
TU1333280 other downstream 1214605 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 1392377 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 1394645 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 1562842 36338093 ~ 36339356 (+) True LOC110486232
TU1333650 other downstream 1775770 36551021 ~ 36566778 (+) False LOC110486241

Expression Profile