RNA id: XM_021557615.2


Basic Information

Item Value
RNA id XM_021557615.2
length 4801
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110486194
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34894771 ~ 34906048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCACTTGGCTAAACCTGCATGCTAAATAGATGAAGAAGAATTTCTTGCCCAATTGGCAAAAATCGTCTGTACTCCGCGCCTGCGCGTTTGAAAAAATGATAATGTTGTTGatatgctatgctagctagctagtggagTTGTTTTTGCATATTAGGTTACCATTAACTTTACTCTCTTCACTGTCTCGCCACTGTATCAAGATAAACCCGAAAACGCTCCGCATGAAGGGCTGATGGAAAACGCAAGAGATACGgctgaACGGACTGTTCGTTCAGAAAGGAGGAGGCGGGACTCGTTTGGGATGTTCGATGGCTATGACAGCTGCAGTGAGGATTCCAGCAGTAGCTCGAGCTCAGAGGACAGTGATGAAgaggttccctccctccctgccagcCTGCCCATCATCAAGACCAACGGCCAGGTCTACACCTACCCCGATGGGAAGGCAGGAATGGCCACCTGTGAGATGTGTGGGATGGTGGGAGTGAGAGATGCTTTCTACTCCAAAACCAAGCGCTTCTGCAGTGTATCCTGTTCAAGGAGTTACTCATCCAACTCTAAAAAAGCCAGCATACTGGCCAGACTGCAGggTAAACCACCAACGAAGAAGGCTAAAGTATTACAGAAGCAGCCTCTCATGGCGAAGTTGGCTGCCTATGCCCAGTACCAAGCCAACCAACAGAATCAAGTCAAGTCAAAAACTGTGATTCCTGTGAAAGGCTTTGATTGGGGACGCTACATAGGCACCGGCGACATTAACGGGGCACCTGTCGGCTGTTTCAAACACGTTCCCATGGGAACTTCCTGGGGTGACCTTGCAGAAGGGGTGAGGGTAGAGGTGCCCAATACAGACAGCGGCCTGCCAATGAAGGTGTACTGGATAGCAGGAGTTATCAAATTAGCAGGCTTTAAGGCACTGCTACGGTACGAGGGGTTTGATGGTGACTCTGGCAGGGATTTCTGGTGTAACATCTGTGTCCCTGACATCCACCCGGTGGGGTGGTGTGCAGCAGGAGGAAAGCCCCTGGTTCCTCCCAAGTCCATTCAGCACAAGTGCACCAACTGGAAAGCGTTTCTTGTGAAATGCCTAACAGGAGCAAAGACTCTACCTATTGATTTCTCCACCAAGGTGCAGCAGAGCATGCAGTTCCCCTTTAAGAAGCTGATGCGTGTGGAGGTGGTGGATAAGACTCACCTGTGCCGGACGCGGGTGGCCCTGGTAGAGCAGGTGATCGGAGGTCGGCTTCGGCTCGTCTACGAGGAGTGCGAGGACGGCTCGGACGACTTCTGGTGCCACATGTACAGCCCACTGATACACAGCATCGGCTGGTCCCGAGGCATCGGACACCGCTTCAAGAGATCTGATGTTTCAAAGAAACTTGATGGCCAAGTAGATGCCCCAGGACAGCTTTTTGCGAAGGTGAAGGATGTTGACCAGAGCGGGGAGTGGTTTAAAGATGGCATGAAGCTGGAGGCTATTGACCCTCTGAATCTATCAGCTATTTGTGTTGCTACTGTCAGAAAGGTCTTGGCGGATGGATACCTCATGATTGGAATTGATGGTTCCGAGGCGGCTGATGGTTCTGACTGGTTCTGCtatcactccacctctccctctatctttcctGCTGGATTCTGTGAAATCAACACAATTGAACTCACCCCTCCACGTGGGTACACAAAACTCCCATTCAGATGGTTTGACTACCTCAGGGAAACGGGTTCAGTGGCAGCTCCGGTGAAGCTCTTTAACAAGGAAGTTCCAAACCATGGGTTCCGCCCTGGCATGAAGCTGGAGGCTGTGGACCTGATGGAGCCCCGGCTGGTGTGTGTTGCCACAGTGACACGTATTGTACATAGACTGCTGCGCATCCATTTTGACGGCTGGGAGGACGAGTATGATCAGTGGGTGGACTGTGAATCACCTGACCTCTACCCTGTGGGCTGGTGTCAGCTGACTGGCTACCAGCTACAGCCACCAGCTGTGCTCGccTCTAGAGAGCTCCCTCTGAGTGTGACAAAGCAGAAGAAGAAATCCCAGCAGTACAAAGGCCAAAAGAAAAAGAGGAAGATCCCCATTGGTAAGAGACCAGTGAGTTTGTCGGGGGTGGTATTGAGTGGAGTGCCCCAGAGGAACCTATCTGGAGACGAGAACATGACCCCGCCAGACTACCCATCTCCTCCCACGCCGGCATCTGCCTCTGGGACTGCACAGCCTCCCTCGGCAGCCCAGGAACTCAGCCCCAATGGAAAGCCAGGGGTGACGCTGCAGCTGAAGGAGGAGGTTCAGGAGGCAGACGAGTTCACCTTCCCGCAGGGCACAGCCTCCGACCTGGAGAGCAATGGCTCCGGCGACAGCTACTACATCAAGCAGGAGACCTGAGCCTCCGTGGGGCACTGCTGCAGGAGAGccagtcccctccctctccctccacagcaCCAGAGACCATGGGCCCTGGGTGGCATCCCCACAACATTAACATGGAAGGTCACCAGGGGGCTTCAAGCTGTGCCCATAGAGACTTGGGACAGAGCGACTCAAAGACTAGTTGCAAACGGGGAGAGGAGTGTAGAgaataaagggaaaaagagaGGTGCGTGAACGACAATAACTTTACGTTTCAGTTCAGTTTTTTGtacttcaacaaaaaaaaaaaaagcttttttaCGATTTTTTTCTAATCCGATATCTTTTTGTGCATCTCTCGTATTCGTTACATTGAGGTAGGGTAATCGTTCGATGGATAAACTGTGTgatgtttgtgtatatataacagggtgtatgtatgtatgtaggtattGAATGGACTAAACCTTACTGGTATAAAACAATCACTCAGATATAAAGTAGAAACACCACCAATCAGCTTCATACCAGTTCCGCACATTCAACTAAGATTTGAGCAGTTTACCACATTCTCTGGATCTTGCGTTCCATTTGTGTGATAGCCAATCATGACTTACAGCTATCACTGGGACATTACCAGGGAGAATGTGGGAGAGCCCCAAATCTTCAGTTGACCCTTTTCTATCACTATATTTACCATGCCTTATTTAAAATATGTTTACAAATATTACTCCTCTTGGCCAGCTGATTGCAGGCAAATGTTTTGTCAAATCTAAACAGTTCTACTCTTATGAAAAACAGGTCATTCACTGTGGTAATATTTAGTTCTATCACAGTTTACTACACAATGATATGCAAACCTTGACTCTTGTGTCAAGTAATAGAGATCTATGTGAAATGTTTTATATCTAACATATAGCATTATTCTACATGAATTATGTCATAATTCAGAGCGATACTATAAATATGAGTAGAGGAAATATTCAAGTCACTGTAATATTCGGGCTGTGTTTCATCAGTACCATCAACAACATGAGAAGCGTTTTATCTAAATAGAGAATTTACTGTCTTTGTAAAAGAAAAACTTCATAATAATGCTGTTTGCTCTACCTCTTTTAgaacttttaatgtaatctcctGTTGCAAGGTTTTCAGATTCTGGTCAAACCACACGTAAAGGTGACTTTTCTTTACAATTTAAATCACTTTGACGGCTATGTGTGCATATTTCCTAGTAAGTGATTGGTAGGCCTGGGCTAAATTGTCATACTCACTGACTCATGATCATACATTTTATTCATAGGCCATCCTTTCGTTGGGAGATATTAAATGAATGTCAATATTGAtttataaaacaaaatatatcaCATTAAATGTGTATTTATGAACAAAGTATGCAGTATATAACAGAGCCAATTTACAAACATGACATGGTGATTTATTTTGTGCCATATGAGAAATTAAAGAGGGATTATAatgtacatactatatatactaacGACTGCACTCCGTTGTCTTACTTTATATACCAGTAAGGTTGACAATTTACTCTCAGGAAATCTTAGCGTATTGTATTATAGGCTTCTTCTTCGTTGTTAAGGTTATTGAGAACGGTGTTGTCATTGGCTGTTGGCATGCTGAAATTAGACTTCAGAGATTGATGTGGTCAACAGTATTAATAAAAATGTGTTTAGTCCAAGATCGGTCTTAAAGTAAATATGAACACTTGGTAAACCATCTCACTAATGTAGAGAGACCTATTTGATTGTGATACAAGGTCCCATTTTAAGTGGATTTGTCATATATTCTGTCTCTAGAGGTAGGATTACCCTTCTGCGTGTCACTGTTTGATAATGTGTAGGTGTTTGGTTtgaacttttctttttttgcaaaaatgttcaGTTAAATGTTAGCTCTGTCGATTTGTCttactgttgttactgtatgtttgtttcaaTGTCTGGTCCTGAGTGAAACTCAAACTAGTATTACAGTCTCAatgaaaatgtacattttactGGTGTAAACCAGCTCAGGTGACCTTGGTGATGCCAAAGATTGCCTAAGGTCACTGTCAAGCAATAACGTCTTATCACAGTACTCTCCTAACGTTACATTTTACCCTAATGTCATAATAATGAACAAGGTTTGACAGGCACACGGTAGCTAAATATATGGTACAGAGGCATATCTGTTGCAAATGCTCCCAATTTCACCCTACATTAGGTTTGGGAGACAGTGAGATCATAAGCTTTTAGCTGTACTTTCACTCAAACTTCAGACTGTGCATCAAAGACCGAATGGGGAAAATATACATGACATTATGTTAATATATGGCATGACTGTTTTGAGGCGACAAACATTGTCTCCGTCGTCCTTGTAACACAAATGTTAGACACGAGAATTTGTGGTATTtgaatgaagaaaaaaataaacgCACAAATGGACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1331849 lncRNA upstream 20169 34874384 ~ 34874615 (+) True G1167936
TU1331847 lncRNA upstream 22599 34871822 ~ 34872185 (+) True G1167934
TU1331645 lncRNA upstream 31291 34862144 ~ 34863493 (+) True G1167741
TU1331846 lncRNA upstream 39853 34854695 ~ 34854931 (+) True G1167933
TU1331844 lncRNA upstream 41810 34852770 ~ 34852974 (+) True G1167931
TU1331872 lncRNA downstream 27190 34933238 ~ 34933462 (+) True G1167958
TU1331874 lncRNA downstream 28624 34934672 ~ 34934886 (+) True G1167960
TU1331875 lncRNA downstream 29622 34935670 ~ 34935918 (+) True G1167961
TU1331883 lncRNA downstream 44293 34950341 ~ 34951244 (+) True G1167969
TU1331886 lncRNA downstream 66251 34972299 ~ 34972534 (+) True G1167972
NM_001124457.1 mRNA upstream 50517 34782778 ~ 34844267 (+) True LOC100136181
LOC110485154 mRNA upstream 119533 34771005 ~ 34775251 (+) True LOC110485154
LOC110486188 mRNA upstream 207114 34680909 ~ 34687670 (+) False LOC110486188
XM_036940851.1 mRNA upstream 216650 34643750 ~ 34678134 (+) False LOC110486187
XM_021557618.2 mRNA downstream 13283 34919331 ~ 34932630 (+) True LOC110486195
LOC110485155 mRNA downstream 31517 34937565 ~ 34947362 (+) True LOC110485155
XM_021557621.2 mRNA downstream 69067 34975115 ~ 34998416 (+) False LOC110486197
XM_021557620.2 mRNA downstream 69070 34975118 ~ 34998416 (+) False LOC110486197
XM_036940855.1 mRNA downstream 84052 34990100 ~ 34998416 (+) True LOC110486197
TU1331612 other upstream 207134 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 1091119 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 1645576 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 1664301 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 2172322 32715256 ~ 32722462 (+) True ifn2
TU1333280 other downstream 1083808 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 1261580 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 1263848 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 1432045 36338093 ~ 36339356 (+) True LOC110486232
TU1333650 other downstream 1644973 36551021 ~ 36566778 (+) False LOC110486241

Expression Profile