RNA id: XM_036940862.1



Basic Information


Item Value
RNA id XM_036940862.1
length 6092
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110486203
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35123432 ~ 35148336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTGGCAGACACGGACAGACGAAGGGAGTTAGTTATTGCGTCTCCAGTAGGACCGTTACTTCACCGCTGTTCTTGTTGCTCTTGATTATCTGAACTCGGACGAAACGTTACACAGAGTGAACATGATATTATTTTCTCATCAGCTTTTCATCCTCCTATGGATTGTTGTAACAGTGGTATCTTTTTCTGTAGGGGTAGAGTCCAACAACACGGCTCCTGGCACACATGACAGTCCTGGGATCACAGATACATCCATGACCCCAGGAGATAGATCCACCACCCTCTTATCCACAAATACCCCAGTCTCCACTGAACCCAGCTCCACCACCACAGACCCCACAGACCCCTCAACTGTCCTCCCTAGCACTGATGGCACCTCACTCACAACAGCAGCCATCTCTATAACTGAAGAGGTCTCTACTACAACAGACCTGACCTCAACTTCTGATACGACAGAGTCTAAGAGAGCAGTCGGCACCACTGCGACAGAAACAAGAACTACCTCGTCAGTCAGCACAGCAAGGTTGACTTCCTCCCACAAGACCACAGCGTACACTGTCACTTCCTCTGAGTCGACCGAAAAAGACAGTCCGTCCACAGACAGTGACATGACAACAACACCCACCACCACACCTGCCCTTAGCAGAGGTGACTCTCTGTCTACCATGGAATATACAGGCCGTACCTCAGCTGATGTCCCCACAGAGTCAAACACAACTCCAGACATTATCCCAACCAGCAGTACCACTGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACTGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACTGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACCACAGAGACAGGCACACATGAAATAACAGTTATCAACACAGGTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGCTACCACAGAGACGGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAACTACCACAGATACAGGTACCACAGAGACAGGTACACATGAAACAACAGCTATCAACACAGCTACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACGACAGATACAGGTACACATGAAACAATAGCTATCAACACAGCTACCACAGATACAGGTACCACAGAGACAGGCACACATGAAATAACAGTTATCAACACAGGTACCACAGATACAGGTACACATGAAACAACAGCTATCGACACAGCTACCACAGATACAGGTACCACAGAGACAGGCACACATGAAATAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAACTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAACTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAACTACCACAGATACAGGTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGAAACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGCTATCAACACAGCTACCACAGATACAGGTACACATGAAACAACAGTTATCAACACAGCTACCACAGATACAGGTACCAAAGACAGTGAGACCACAGGTTCAAGGATCACAAAGTCCACCATCCCACCAACTGGTCAGACCTCTCTCCCAGTAACTGAGGGTAGTACCATGTCTTCAACACCCCTCTCCGCCACTACAAGGGGTCCTGAGACCGCTCTCCCAGTGAGCGATGGCTCCACGTCCTCATCCCCCACCGCTACCATTACAGGGAGCCCTCATACAGACAAAACCACTGGAACAGAGGGGACTACCGATTCTACAACCACAGCTGGCACTCCAGCTTTGCCCCCCACCTCCGGCTCTTCCTCCAGCCCACCCTCTCCAGGCTCAACCCAAACCCCAGGCAGCAGCACTGCTGCCCCCGTagacacctccaccaccacccctgcccccTCACCCACCATCTCACCTACAGGAGaaACCCCTGGGCAACCGACTAGCAAAACTAGTGAGAGTCCACTTCCTCCTTTCCACACCTCGACCTCCCCTACCGGTGGAAGCACCACCCAGCCAGAGTCAGCCATCACTGCTGCCACCTCCCTGCCTCCACCCATCTCCATAGTgtgtccctcctctccctgtccgtaTGATAGCATCTGCCTCAACGGCACCTGCCAGTGTATGTCTGGGACCTTCCTCTTAGAGGGCCGCTGTGTACAAGCCCAAGTCTTCTCTGGAGACCTGCATCTCAACCAGACATTTCAGGCTGAAATGAGCAACCGGTCATCAGGGATATTTAAGCAAACAGCAGCCAGGATCTCAGAAGCACTGAGAAGAGCCTTGGAAAACGAGTCTGGATACAGCCAAACTGATGTGGTGCTGCTTCGGCGAGGCAGTGTGATCGCGTCCGTGAACAACGTGTTTAAACTAGGCTCCAGTGCCACCCGGACTTCGACCAATGCCGCTATAGAGAAAGCCATACAAGCTTGTGGGACGACCTGTGGGACCATACTGCAGAGAGCTACATTTAACGCCACTGACCTATGTGATCAGGCCCCCCAACCGTGTGATGTCCGCTCTACCATGTGCGAGTACAAAGAAGATGGAGTGACCAGATGCTCCTGTAAGGCTGGCTACATCAACAGCTTCTACTCAAACCAAAGCTGCACAGCCTGTCCCAGTGGTCAAAGGTCAGAGGGAGACACATGTGTGCCATGCACGTTTGGCTATGCTGGATTCAACTGCACTGACTcgGCTCTGTTGGCAGTGGTGGTCATCGCCTGTGTACTGGGGGGAGTCCTCCTCATCATGCTGCTGGGCCTGCTTGCATACTGCTGCTGGTACCGGTCACAGTCAGTGAAGAAGCCTTCAGCAGAGTTCAGCAGCCCGTACCCTGTGGAGGACTTCCGGGGCCCCTGGTCCACCTCCCAGGGCATCACCCCGATCCCCCGGGCCAGCACCAACTGGGACTCAACCCCCATGGAGATGACCGAGGGGGGCAGCACACACACCCCGGTCGACATGAAGCCCCACACCAACGGAGCGGGATTCCACATCCTGCCTAAACGGGGGAAGAAGACCGGGTCGTATGACCTGACCTCAGACAGCATGAACACGTTCAAGGGGAAGAACCCCTCTCGCTACTCCTACCTGGTGCAGGGCCACGAGAACCCTTACTTCAAACCTGCAGATGAGAGGAGACCCATATGATTACCCTTACTTCAAACCTGCAGATGAGAGGAGACCCATATGATAACCCTTACTTCAAACCTGCAGATGAGAGGAGACCCATATGAGAACAAACATGGCTAAAGATCAAATTGAGAAGTCACTGACTTCTAGTAACTCTGGGTATTGGTACATCCTCTCACTGTATTTCTGTTGAATTGTGTAGAACTTTTCCTTTGCATCAGGATGTTTTCGGATAGATGCCATGTACTGTCTAGGGCATCTGGAGTCATTAATGGTTTAATGACACAACTACAAGGGACTTGACAGCAGGGTTTTTTAAATATGTTCTTCTGGAATCCATTCTCAAAGTCAGCTTTATGATTCAGAATGATTTGGAGTCCAACATGCATCGACTTCACAGGGATTCACTTCAATAACTGACCCTACCAAAAGAGGATTTTGTTCACTACAAATCCATGGTTTACTTTTGAAACGTTCCGTTCATCTGATCATGGTCTTTTATCCTGTTCTGCAATACAAGAACaagatttataaaaaaaaaatgtttttatttaaaatgtttttatgtgTCCTGTGTTTAGACTGGCAGCTCAAATCATATATTTTTTCTCTTTTGAAAAAATATCTggtgtgaaaagatctgatgtggttggtcaaaagaccaactaGTTGGGGGGGGGGAGGTCAGAATTGGACTGCCTTAAACGCAGCCTTATTGAATGAAGAGTGAGCTGAATATAGCTTGTCGTAGCCAGTAGTTGTCCCCATTGTTCAGGGTCAagcttttcatgttttttttttttccttctacaGTATCCTGCTACATTTAGTCACCTGGATGTCTATGTCTTGTTGAAGAGATTACAGATATATTTTAGATTGGTCATTCTGCATTGTCGTTTCTCACACTCAACGTAGTATTCCAAAGTGATTCATCTATTGCTATTTGCACTAAATTATGTATTTGCTTTACACTACATGTGATTTGTTTGGGTGGGGGGGAATCATAGACACATTCTCAGTGAGAGCAaatgtttttctatattttttactttaggaTTGATTGTGTTTTCATGacgagagctgtgtgtgtgtgtgtgtgaagcgcTGAAGGAGCTGGATCCCTAGTTCAGGGGTTTATACAGTCAAGGGATATTTTgtattagtctggtctggagcGGAGTAGacctactctacagtctattagTCTGGCCTGGAGCGGAGTAGacctactctacagtctattagTCTGGCCTGGAGCTGAGTAGacctactctacagtctattagTCTGGCCTGGAGCTGAGTAGACCTTCATCCTCTGTTATTAGTACCTTCCCTGCTGAAGCTGCCTGCATCTGCAAATGTGCCTGTTTTGATTGGTCTTTTTGAAGAATATGAAAATtatgcaaaaaataaaaaataaactctcGACAAAGCTTGTTCTCAGACGTGCCAATTACCATGTCTATACACTTCcgcaaaaaaatatgtttatggAAGTCTcacatgtctgtgtgtatttgtgagtaTGTGTGTCTCGTGCACTATTTTCTAAATGTATATACAACTTTTGTAAATTAAACGTCTTACTGCAGAGAATGATGTAAGTGTGATGAACATACATACATTCAAGCACACAACGTGACTTTGCCTTATGTTATCATGCAGACAAATTGTTGTTAATAAACATCAGTGGGTGCATCTGTGTGCAGTCCACAGGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1332641 lncRNA downstream 83977 35038690 ~ 35039455 (-) True G1168592
TU1332540 lncRNA downstream 104394 35017918 ~ 35019038 (-) True G1168542
TU1332585 lncRNA downstream 124537 34998687 ~ 34998895 (-) True G1168577
TU1332548 lncRNA downstream 125035 34994954 ~ 34998397 (-) True G1168549
TU1332576 lncRNA downstream 149788 34973400 ~ 34973644 (-) True G1168568
TU1332831 lncRNA upstream 154955 35303291 ~ 35303527 (-) True G1168758
TU1332833 lncRNA upstream 159578 35307914 ~ 35308135 (-) True G1168760
TU1332874 lncRNA upstream 194201 35342537 ~ 35342759 (-) True G1168801
TU1332914 lncRNA upstream 207181 35355517 ~ 35369938 (-) False G1168828
TU1332911 lncRNA upstream 209574 35357910 ~ 35364062 (-) True G1168828
XM_036940857.1 mRNA downstream 15802 35076805 ~ 35107630 (-) True LOC110486202
XM_036940858.1 mRNA downstream 15803 35076805 ~ 35107629 (-) False LOC110486202
XM_036940859.1 mRNA downstream 15803 35076805 ~ 35107629 (-) False LOC110486202
XM_021557619.2 mRNA downstream 156536 34955716 ~ 34966896 (-) False LOC110486196
NM_001165224.1 mRNA downstream 212869 34907942 ~ 34910563 (-) True ndkb
XM_021557630.2 mRNA upstream 21870 35170206 ~ 35182760 (-) False LOC110486204
XM_021557631.2 mRNA upstream 21870 35170206 ~ 35182762 (-) False LOC110486204
trnac-gca-7 mRNA upstream 334648 35482984 ~ 35483055 (-) True trnac-gca-7
XM_036940899.1 mRNA upstream 349213 35497549 ~ 35520312 (-) False LOC110486206
XM_036940900.1 mRNA upstream 349213 35497549 ~ 35520312 (-) False LOC110486206
TU1332681 other downstream 12421 35097452 ~ 35111011 (-) True G1168629
TU1332537 other downstream 115135 35002513 ~ 35008297 (-) True G1168539
TU1332564 other downstream 173123 34949237 ~ 34950309 (-) True G1168559
TU1332563 other downstream 173610 34949237 ~ 34949822 (-) False G1168559
TU1332428 other downstream 258036 34862127 ~ 34865396 (-) False si:dkey-89b17.4
TU1332741 other upstream 31732 35180068 ~ 35182647 (-) True LOC110486204
TU1335055 other upstream 713816 35862152 ~ 35864644 (-) False G1170691
TU1335139 other upstream 850587 35998923 ~ 36000948 (-) True LOC110485158
TU1335185 other upstream 942426 36090762 ~ 36091417 (-) True G1170811
TU1335200 other upstream 961766 36110102 ~ 36110439 (-) True G1170826

Expression Profile


XM_036940862.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.1.
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XM_036940862.1 Expression in each Bioproject

Bar chart with 3 bars.
XM_036940862.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.25.
End of interactive chart.