RNA id: TU1333509


Basic Information

Item Value
RNA id TU1333509
length 1238
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC110486232
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36338066 ~ 36339755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCATGCAGGGCAGTCTTACGTACAGATTTACACCTCCTTCGAGATGTCCAAGGGGACCCGCTTGAGAGGTTCGAGCTACGTAGAAGTTGTGTTCAGTTTATTACTTTGACTCGCAAGTATGATGCTGAATAGGGCATCTGGTTAGGGTTGGGATAGTTTCTGCTTTTGGCCGTGCTGCTATTATCGAATTTAAAAGAAGGTTATACATTTCTCATTTGGTTTTTACTTTGGTTTGTTTTCCCAGTCACATGACGCAAATTGAAACTGCGAGCCAGGTTTTAgccgtgagtgtgtgtctgtggaacCGCGTGCGCCCATATCTGCCAAGCGCTGTCAGATTGACATCCACGGAGACATGAACAGCTCCTTCTTCGACCAAGCCCAGGGCGTACTATTCAACAGGAGCCAAGTCCTCGCTGGTACTCTGGCGAACTGCTGCAACGCGACCGACGTGGCAACCAGTGACGGCGGCTCGCTGGCGCTACCTCCGGACGAGCGGAAACTCTTCATCAGTCGCGTCGTACAGATCGCCGTCCTGTGCGTACTGTCGCTCACCGTCATGTTTGGTATCTTTTGCCTCGGCTGCAACCTCATGATCAAATCAGAGAGTATGATTAACTTTATGGTGAAGGACCGGAGACCTTCCAAAGACGTAGAGGCGCCGGGGATGATAGGACTCAGCTAGTCTCTGGCGCCGGGATGGAGAATGGTGTGTAGCAGCGCGCCACGGACTCATAGCCTCACCACGCTGTATTTTGGGCAGCACGCTGATATGCAATGCGTTTGATTTCCTTACGAAATATGTTTGCCAATAAAGACTGCAATTGCAGTCAAGCGCGGACAATTCCTCACATCAAAAGTTCAAGGAGGACAAGGAATGCATCGTTGTTTACGCATAGGCTGTTGGATATGGTTTTGTTTTTGACTGTCAACTTGAACAAAGTAATGGACTCTTGTGATATAAGTGTTTACACGTTGTTACCTCAAATTCTATTTGCAAAAGTCGATATTTCATAATTGTTCAAGTAACAAAACTAACTCGTCAGCAACTTTACGCATGCAGATGTTATGTTTTTTTCCCTTTCCAGTTCTGACAGTAGGCTGTGGATGTTTTGGATGTGGGAATTctctgaaaatatatttttcttgGTCCCGTTTCTTAGTAGCATGTCGGGCAAACACCCAAGGTGCTGGGATCTTGCATGTTTAACAAACCCCATCACTGCTTCAGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333483 lncRNA upstream 31429 36306456 ~ 36306664 (+) True G1169315
TU1333451 lncRNA upstream 71188 36266470 ~ 36266905 (+) True G1169286
TU1333408 lncRNA upstream 127972 36209485 ~ 36210121 (+) True G1169247
TU1333355 lncRNA upstream 225661 36112232 ~ 36112432 (+) True G1169194
TU1333353 lncRNA upstream 227618 36110249 ~ 36110475 (+) True G1169192
TU1333545 lncRNA downstream 34210 36373566 ~ 36425661 (+) True G1169366
TU1333628 lncRNA downstream 163380 36502736 ~ 36503327 (+) True G1169444
TU1333553 lncRNA downstream 166274 36505630 ~ 36507309 (+) True G1169371
TU1333542 lncRNA downstream 205786 36545142 ~ 36547679 (+) True LOC110486240
TU1333693 lncRNA downstream 230309 36569665 ~ 36569882 (+) True G1169489
XM_036940932.1 mRNA upstream 170705 36131568 ~ 36167388 (+) True LOC110486228
XM_021557668.2 mRNA upstream 290285 36041771 ~ 36047808 (+) False LOC110486225
XM_036940925.1 mRNA upstream 428850 35900832 ~ 35909243 (+) False st8sia6
XM_021557677.2 mRNA downstream 24199 36363555 ~ 36368288 (+) True LOC110486233
XM_036940935.1 mRNA downstream 117998 36457354 ~ 36460939 (+) False LOC118938276
XM_036940936.1 mRNA downstream 118165 36457521 ~ 36460939 (+) True LOC118938276
XM_036940937.1 mRNA downstream 186283 36525639 ~ 36547943 (+) False LOC110486240
XM_036940938.1 mRNA downstream 221974 36561330 ~ 36582092 (+) False LOC110486241
TU1333369 other upstream 166522 36169896 ~ 36171571 (+) True G1169208
TU1333368 other upstream 169762 36167628 ~ 36168331 (+) True G1169207
TU1333280 other upstream 345493 35989856 ~ 35992600 (+) True G1169121
TU1331612 other upstream 1650443 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 2534428 33790640 ~ 33803665 (+) True G1166779
TU1333650 other downstream 211665 36551021 ~ 36566778 (+) False LOC110486241
TU1333737 other downstream 331003 36670359 ~ 36671403 (+) True G1169532
TU1333748 other downstream 362916 36702272 ~ 36703736 (+) True G1169542
TU1333668 other downstream 431432 36770788 ~ 36806200 (+) False G1169468
TU1333673 other downstream 445456 36784812 ~ 36812201 (+) False G1169472

Expression Profile