RNA id: XR_005035529.1


Basic Information

Item Value
RNA id XR_005035529.1
length 5547
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC110486244
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36632446 ~ 36664344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCACCGCAGACCCAACGCAATTCTGTTCATTTTCTATCTACCATTTCCACATACCGCAGATTCGCATACACTCATGCATACATACAGCTTACACACGCACAATCATGTAGGATGTATGCATACGTGCACTCAAATATCCCCATTTGACCTATTCTACATAATCTAGGCTAATTTGCCAATTCCAATATTGATCGGCTCTGTCATAGGCTATTAGGCCTGTTTCTTTTTTCATTTGGTGATAGGCTATTTAATTAAATTGCCTGATATCGGTGAGACTGTATGCTACGAGTTGAATGGGGAGATGAGAGGACGAGCGTCAGCTGTCAACCAGATTCATTcggtgttttctctctctcgccataATCGTTTGAGCGTCGGTTTTCTTTTTATCTGCGCCTGTTACATTGTAACGCACTCGATGTTAATTCGGGGGAATATGTGAACATCATGCTGGCGGTGTGGTGCTTGGTCTTTGCTGCAGTGGGCGAGAGGCTTGCCGTGTCAGGCGACGGCAGGTCGACTTTGCTGCGGGATGCGAGTTTGTGGGATTGGTTCTCGCCAGAGGAGCGGGGAGACAGCAGCGACATTGCGGTCGAAGTCGCCTATCCAAAGCGGCTGGTGCAGCAGATGGAGTCGGAGGAAGAAATGTCCCACGGCTATTTGGATACTCGCATGAAGAATACCACGGGAGGTACCCCCCCAGTCCATTTGGCCCAGAGTTGTTTCCAGGTGGAAACCTTCGGACACACCTTCACCCTGGACCTGGAGTTAAACCACAACCTCCTGTCCTCAGACTACGTGGAGCGGCACTTCCACCAAGACGGCAAACCCTCGCAGTctatgGGAGGGGAGCACTGCTACTACCAAGGGAGGTTGAGGGGCTTACCAGAGTCCTGGGCAGCTCTCTCCACCTGTCTTGGCCTATGTGGTATGTTTTCTGATGGGATGTTCTCTTATGGGATTGAGCCTCTTTTCGACGGGACCAATCAGACTGAGGGGGCCCACCTAGTGCGTAGGATGCCTGATGTCAGACTATCCTCAGACTGTCAAGACTGCACAGACGACAGTGGGGGGGGTGGAGCCAGAGGTAATGGTGATGAGCAGATGAAGGATCCCCGGGTCAGTGAGGTGCTGAGGCGCTCTAAGAGACAGCTGCCGCGCAGGCCCACCGTGCAGTCAGAGACCAAATACATCGAGCTGATGGTGGTCAACGACTACGAAATGTTTGTACAGCTGCGACGCTCCACTACCCAGGCCAGGAACTTTGCCAAAGCAGTGGTCAATATGGCTGATGCAATTTACAGGGAACAGCTGAACACACGCATTGTGCTGGTTGCCATGGAGACCTGGTCGTCGGCCAACATGGTTCCCGTGGTGACCGACCCGTTGACGACGCTGCAGAACTTCATGAAGTACAGGAAGGACAGTATTAAGGAGCAAAGTGACACCGTGCACCTCTTCTCGGGGCGTACGTTCCAGAGCAGTCGCAGTGGGGCGGCCTACACCGGAGGGGTGTGCTCTCTCACCAGAGGAGGGGGCATCAACGAGtATGGGAACGTGGGTCCTATGGCCATCACTCTGTGCCAGAGTCTGGGTCAGAACATTGGGATGAGGTGGAATAACATACGCAGCTCTGCGGgaGACTGCAGATGTCCTGATTCTTGGCTTGGTTGTATCATGGAAGACACTGGATATTACCTGCCCAGAAAGTTCTCCCGCTGCAGTGTTGACGAGTACATCCAGTTCTTGCTCCAGGGGGGCGGGAGCTGCCTCTTCAACAAGCCCAACAAGCTGTTGGACCCCCCTGAGTGTGGGAACGGCTTCGTGGAAACAGGGGAGGAGTGTGACTGTGGGTCTCAGCTGgAGTGTGCCCGTAGTGGAGGAGCGTGCTGTAAGAAGTGTACCCTGACCCACGATGCCATGTGCAGTAGTGGACTGTGCTGCAGTGGGTGCAGGTATGAGCTGAGAGGAGCGGTGTGCAGACAGGCTGTGAATGACTGTGACATCCCAGAGAGCTGCACAGGAGACTCCAGCCAGTGCCCACATAATGTGCACAAGCTGGATGGATACATGTGTGACAGTAGTCAGggtcgtTGTTATAGTGGTCGGTGCAGGACTCTCGATGGCCAGTGTAAGGGACTGTGGGGCTACAATTCAGCAGACCGCTTCTGCTATGAGAAGCTGAATGCAGAGGGCACAGAGAAGGGCAACTGTGGGCCGAGTCCTGAGGGCCAGGGATGGCTGCAGTGCAACAAGCCGGATGTACTGTGTGGTTTCCTGTTCTGTGCCAATATGACGGTGAAGCCAAAGTTTGGGGATCTGGAGGGGGAAGTGACCAGCCATACAATATACCACCAGAACAAGTACCTGGACTGCCGaGGGGGGCATGTCCTGCTGGAGGATGGGTCAGACCTGGGCTACGTAGAGGATGGTACGCCGTGCGGACCCAACATGATGTGTCTGGAGCGCCGCTGTCTCCCCGTGGCAGCCTTCAACCTCAGCACCTGCTCCGGCTCCACGCTGGGACGCACCTGCTCTGACCACGggacatgcAGTAACGAGGTGAAGTGTATCTGTGACAGGGACTACACTGGGAAGGACTGCAGTGTCTTTGACCCCATCCCTGACCCCACGCCGCCTGCCAGCACAGAGAAGAAAGggctcatagggctctcaTAGGCCACAAAAACCAAATCCACCCTAAGCAAGAGGGTGTCCAGCTGAAAGagcaaggagagggggatgagaaagAAGTAATAAAAACACCCTCCTTTTTTTTAACTGTCGTCTCCCTGATCTCCCCTCGCTCTCCCACGCTTCCTCCACCCCACTTCCtttcttattctctctttctttgagtaccctttctatctctttctctctctctccttctctctcgttcgctctctctttccGGATGTTGTTGATGTACAGTGTCGATGCTGTCCTCTGACGTGTGTTTTTGGTGGTGTTGTTTTGTTCCCCTCCGcacccttcctcccccctccttcctctgcGCAGGTCCCAGTGGCACCAATATCATAATAGGGTCCATCGCAGGTGCTATTCTTCTGGCAGCTATAGTCCTAGGGGGGACAGGATGGGGATTTAAGAATATCCGAAGAGGAAGATCTGGTGGAGGataagatgtctgtctgtctgtctgtctttgtctgtctgctcctgtctttctctcactctgtgaTGTTTCCAAGTCGGAGAAGAGGGAAAAAGAACAAGTCTTCCACTCCTGTCCCGAACCTCTCCAGACCTCTTCTGTTAacatctcctctcctgtccacttcctgtctgtccaCCTGTCCATCTCCGGCCCCTCCGGGCCAGTGTAGCACCTCCCACATTGCATACCAGCCAATTATATTATCCAATCAGGATAAAGTCTTTGCCATGGACAGAATGAGAAGGTTGTTGTTGGTCCCTAGAGGGGCGTCAGGGTCTTCCTGCTTTCCAGCGACTAAGTATTATGCACTTCGGTGTCTGCGTACTGTAGTTCCCTTTCCTTCCGCTTACGACAGTCCAGTGAAGAACCTGTCAACAGTGGACAAATTCAGTATGAGACATGTCTTTCCAATGCTTGTCTGGAAACACACTTCTGGCCGCTGTTTGAGAATGCTGGACTGGCCCAGACCTGCCATCTGAAAAACGATttaaaacacagaaaaacaaacattgaTCAAAGACTCAAGTGGCCATTGGATCAGTTGAACTGCCCCTTTCAGAGAGGCCATGTCAGGTGACTGGATGACAACCCAGATTCAGACATTATCTAGTTGCAACAACACGGATGTGATCCAAGAAGAGTCCTGTATTGGACGTGTTGTGTACAGGCCATTTCCAAAGAAGGAAGAGcaacttattgtgagaatgaCTATGAAACAAAAGCAGTAGACCGTTCAAAACATCCTGGACTGATGTAGGGTTTATGTAGATTGTTAATTCTTTGTTCCTGTCTGTTGAGATGTGTTGAAATGTAGGAAGGGGGAGTTAGACCCTATGGTTTTGGGATCATATAGAAAATGCAGCAGAGACCGTAACTCAGTGTTTTCAACTGTAGATCTACCAACACAACATTCCACATAGTGTTAGTTAACAGAGCCTGTCTTGTATGTGTCTGTATTCTATTCGCCACCTTCTTAAGAGGCCCAAAGTGTGTATGGTAAAGGAGgttgaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtggtgtgtgtgtgtgagcatgtgtgtgagcatgtgtgtgagtgtagggtACCAAAATTCCGGTTACTATCCCAATATTTCCAAGTTTTCcggaaatcctggttggaagattctcGGAATTGTGAAGGAATAAGCAGGGAAATatggaatcctccaaccaggattccTGGTAAACCAGGGAATGTTGAGAAAGTTACTGACAtttcgtgtgtgcgtgtgtgagagaaatGACGTGAGGAAGAGAGCAGGTGAATGAGAAAGGTACGTGTTGTGTTTGGGACAGTTATGCCCTTGTTCACCGTGACACTCCTGCCAACAACACTGGTAGATAGTTTATAGATTTTTACTTCTAGAAAAAGTTATCTTTCTGCCTGGCTTTGTGCTCGGGAGCCAATGGCAGCACACTAACAAACAAATGGTTTGTATTGAATATGTAACGACCAACTTAAACGAGCACTAGCCCTACAGAATGTGGGAACACATATGCACATctatttgtatatacagtatgtacaagaagATAATACTGAATGTTGAATACAATGTATGAAATTGTTTTAAAATGCAATGCTAATATTGATTCATTTAATCTGTTTCAACGAAGTATCTATCTGTCTCCTGCCATACAACTGTCCATCTCCTTTAAGCCATTCCTAGCTGTCCATCTATCTGTCTACCCGGCACACTGCCTAGTAAGGTAGCAATCTGGCCATCTATCTATTATTGCAGCTGTCAATCTAAATGCCATGTAAATATTGGACACTTATTGATAGGCTCTGAGCCTTACGCTGATGATGCTTTAACACAGTGAGTTTGAAATGACCCCAGGACTCTTCCTCAGTGGAAATGTGATGAGATGAGGTGCAttgctattgaccagggcccgtagtgctctgctggtgaaaagtagtgcactataaggtAATTAGGTACCCTTTGGGACACAACCAGGGGTCTGGTACACTAGGTGTATGGAGAGGTCTGTTTGATTCAGCTGAGTGTCTGCACTATGGCAGATGCACTATAGTTCCTCACCATATGTACAGAATATGTACAATCTTTAGATGGTGGCCAGTTTGTTTGCATTTTGAATTTAGGAAGCAGAGAAAACGCATCATATCCCATATTTTTAAACACTATCTTTTTAAGTAGACTATTGAAATAAACAGTGTAGATGAATTGAAATGAAGGGGAAATAAAAGAGTAAAGTCAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333710 lncRNA upstream 15690 36616471 ~ 36616756 (+) True G1169506
TU1333708 lncRNA upstream 23003 36609178 ~ 36609443 (+) True G1169504
TU1333703 lncRNA upstream 37268 36594721 ~ 36595178 (+) True G1169499
TU1333702 lncRNA upstream 37981 36594010 ~ 36594465 (+) True G1169498
TU1333700 lncRNA upstream 43715 36588508 ~ 36588731 (+) True G1169496
TU1333744 lncRNA downstream 28845 36693189 ~ 36694410 (+) True G1169538
TU1333656 lncRNA downstream 78947 36743291 ~ 36806200 (+) False G1169468
TU1333658 lncRNA downstream 78947 36743291 ~ 36806132 (+) False G1169468
TU1333664 lncRNA downstream 78947 36743291 ~ 36818688 (+) False G1169468
TU1333665 lncRNA downstream 78947 36743291 ~ 36806200 (+) False G1169468
XM_036940938.1 mRNA upstream 50354 36561330 ~ 36582092 (+) False LOC110486241
XM_036940937.1 mRNA upstream 84503 36525639 ~ 36547943 (+) False LOC110486240
XM_036940935.1 mRNA upstream 171507 36457354 ~ 36460939 (+) False LOC118938276
XM_036940936.1 mRNA upstream 171507 36457521 ~ 36460939 (+) True LOC118938276
XM_021557677.2 mRNA upstream 264158 36363555 ~ 36368288 (+) True LOC110486233
XM_036940940.1 mRNA downstream 7964 36672308 ~ 36677819 (+) True LOC110486247
XM_021559451.2 mRNA downstream 20752 36685096 ~ 36687505 (+) True LOC110487537
XM_021557706.2 mRNA downstream 185726 36850070 ~ 36854713 (+) False LOC110486255
XM_021557707.2 mRNA downstream 185726 36850070 ~ 36854713 (+) False LOC110486255
XM_021557708.2 mRNA downstream 187721 36852065 ~ 36854655 (+) False LOC110486255
TU1333650 other upstream 65668 36551021 ~ 36566778 (+) False LOC110486241
TU1333509 other upstream 293090 36338093 ~ 36339356 (+) True LOC110486232
TU1333369 other upstream 460875 36169896 ~ 36171571 (+) True G1169208
TU1333368 other upstream 464115 36167628 ~ 36168331 (+) True G1169207
TU1333280 other upstream 639846 35989856 ~ 35992600 (+) True G1169121
TU1333737 other downstream 6015 36670359 ~ 36671403 (+) True G1169532
TU1333748 other downstream 37928 36702272 ~ 36703736 (+) True G1169542
TU1333668 other downstream 106444 36770788 ~ 36806200 (+) False G1169468
TU1333673 other downstream 120468 36784812 ~ 36812201 (+) False G1169472
TU1333676 other downstream 120468 36784812 ~ 36806836 (+) True G1169472

Expression Profile