RNA id: XM_036940950.1


Basic Information

Item Value
RNA id XM_036940950.1
length 2218
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC118938283
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36798804 ~ 36802004 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTACATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGATAAGAGAAGAGACACGTTCATTCTCTACATTCATAAACTGCAACTAACTCCAAACCATCAAGATGTCATCAGCTAAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCATTTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGACGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGACAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAATGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTTATTTTTGACCTGGGTGGGGGCACCTTTGACGTGTCCATCCTGACCATTGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCACTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTACCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACTCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCCGACAACCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAACGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAAATACAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatg

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335520 lncRNA downstream 3044 36685097 ~ 36795760 (-) False G1171057
TU1335609 lncRNA downstream 36787 36754229 ~ 36762017 (-) False G1171122
TU1335610 lncRNA downstream 36787 36754229 ~ 36762017 (-) True G1171122
TU1335555 lncRNA downstream 38434 36753016 ~ 36760370 (-) True LOC118938280
TU1335600 lncRNA downstream 64229 36733256 ~ 36734575 (-) True G1171116
TU1335495 lncRNA upstream 8501 36810505 ~ 36818675 (-) False G1171057
TU1335494 lncRNA upstream 13443 36815447 ~ 36818675 (-) False G1171057
TU1335508 lncRNA upstream 13443 36815447 ~ 36818675 (-) False G1171057
TU1335620 lncRNA upstream 28916 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 29252 36831256 ~ 36831589 (-) True G1171133
LOC110486257 mRNA downstream 3566 36791910 ~ 36795238 (-) True LOC110486257
XM_036940946.1 mRNA downstream 10754 36777935 ~ 36788050 (-) True LOC118938279
NM_001124745.1 mRNA downstream 10775 36784814 ~ 36788029 (-) True hsp70b
XM_036940945.1 mRNA downstream 17749 36777934 ~ 36781055 (-) False LOC118938279
XM_036940949.1 mRNA downstream 24626 36770875 ~ 36774178 (-) True LOC118938282
LOC118938284 mRNA upstream 3849 36805853 ~ 36809163 (-) True LOC118938284
LOC118938278 mRNA upstream 9491 36811495 ~ 36814605 (-) True LOC118938278
XM_036940952.1 mRNA upstream 16365 36818369 ~ 36821453 (-) False LOC118936524
XM_036940954.1 mRNA upstream 16365 36818369 ~ 36828427 (-) True LOC118936524
XM_036940951.1 mRNA upstream 23227 36825231 ~ 36828499 (-) True LOC110485160
TU1335503 other downstream 52368 36744772 ~ 36746436 (-) False G1171057
TU1335452 other downstream 202163 36595832 ~ 36596641 (-) True G1171051
TU1335451 other downstream 204278 36594054 ~ 36594526 (-) True G1171050
TU1335391 other downstream 305280 36493089 ~ 36493524 (-) True G1170998
TU1335200 other downstream 688365 36110102 ~ 36110439 (-) True G1170826
TU1335510 other upstream 4293 36806297 ~ 36819541 (-) False G1171057
TU1335481 other upstream 17590 36819594 ~ 36828425 (-) False G1171057
TU1335522 other upstream 17590 36819594 ~ 36828425 (-) False G1171057
TU1335460 other upstream 24452 36826456 ~ 36828425 (-) True G1171057
TU1335637 other upstream 82014 36884018 ~ 36884340 (-) True G1171149

Expression Profile