RNA id: LOC118938284


Basic Information

Item Value
RNA id LOC118938284
length 2352
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC118938284
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36805853 ~ 36809163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCTCGCAGCATGCGTCATTGCACAGGAAGCTGCGCTCTCTTGAGCAATGTAGTCGGAGAGTTCGAGAAATGGCTAGAAATCATGAGTGCTATTTTCTAGGCAATGGGGATGGTATATATTCTGGTACATTCAGTACCAGTACATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGAAAAGAGAAGAGATACGTTCAACAGACCTCTACATTCATAAACTGCAACTAACTACAAACCATCAAGATGTCATCAGCTAAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATTGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGATGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGATAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGGGGCACCTTTGACGTGTCCATCCTGACCATCGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGTCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACGCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAACGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAATGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAAATACAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACTAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGCTTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatg

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335520 lncRNA downstream 10093 36685097 ~ 36795760 (-) False G1171057
TU1335609 lncRNA downstream 43836 36754229 ~ 36762017 (-) False G1171122
TU1335610 lncRNA downstream 43836 36754229 ~ 36762017 (-) True G1171122
TU1335555 lncRNA downstream 45483 36753016 ~ 36760370 (-) True LOC118938280
TU1335600 lncRNA downstream 71278 36733256 ~ 36734575 (-) True G1171116
TU1335495 lncRNA upstream 1342 36810505 ~ 36818675 (-) False G1171057
TU1335494 lncRNA upstream 6284 36815447 ~ 36818675 (-) False G1171057
TU1335508 lncRNA upstream 6284 36815447 ~ 36818675 (-) False G1171057
TU1335620 lncRNA upstream 21757 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 22093 36831256 ~ 36831589 (-) True G1171133
XM_036940950.1 mRNA downstream 3849 36798804 ~ 36802004 (-) True LOC118938283
LOC110486257 mRNA downstream 10615 36791910 ~ 36795238 (-) True LOC110486257
XM_036940946.1 mRNA downstream 17803 36777935 ~ 36788050 (-) True LOC118938279
NM_001124745.1 mRNA downstream 17824 36784814 ~ 36788029 (-) True hsp70b
XM_036940945.1 mRNA downstream 24798 36777934 ~ 36781055 (-) False LOC118938279
LOC118938278 mRNA upstream 2332 36811495 ~ 36814605 (-) True LOC118938278
XM_036940952.1 mRNA upstream 9206 36818369 ~ 36821453 (-) False LOC118936524
XM_036940954.1 mRNA upstream 9206 36818369 ~ 36828427 (-) True LOC118936524
XM_036940951.1 mRNA upstream 16068 36825231 ~ 36828499 (-) True LOC110485160
XM_021557702.2 mRNA upstream 31618 36840781 ~ 36851302 (-) False LOC110486253
TU1335503 other downstream 59417 36744772 ~ 36746436 (-) False G1171057
TU1335452 other downstream 209212 36595832 ~ 36596641 (-) True G1171051
TU1335451 other downstream 211327 36594054 ~ 36594526 (-) True G1171050
TU1335391 other downstream 312329 36493089 ~ 36493524 (-) True G1170998
TU1335200 other downstream 695414 36110102 ~ 36110439 (-) True G1170826
TU1335481 other upstream 10431 36819594 ~ 36828425 (-) False G1171057
TU1335522 other upstream 10431 36819594 ~ 36828425 (-) False G1171057
TU1335460 other upstream 17293 36826456 ~ 36828425 (-) True G1171057
TU1335637 other upstream 74855 36884018 ~ 36884340 (-) True G1171149
TU1335834 other upstream 389065 37198228 ~ 37198640 (-) True G1171337

Expression Profile