RNA id: LOC118938278


Basic Information

Item Value
RNA id LOC118938278
length 2309
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC118938278
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36811495 ~ 36814605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTTGAGTAATGTATTCGGAGAGTTCGAGAAATGGCTAGAAATCATGAGTGCTATTTTTTAGGCAATGGGGGCGGTATATATTCTGGTGAAGTACATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGAAAAGAGAAGAGATACGTTCATTCTCTACATTCATAAACTGCAACTAACTCCAAACCATCAAGATGTCATCAGCTAAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACTACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGATGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGACCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGACAGGCCACTGAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAATGCAACGTCCTGATTTTTGACCTGGGTGGGGGCACCTTTGACGTGTCCATCCTGACCATCGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACTGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGTGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACCCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCCGACAACCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATGGAGGTGACCTTTGACATCGACGCCAACGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAGATACAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatg

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335469 lncRNA downstream 5298 36665169 ~ 36806197 (-) False G1171057
TU1335470 lncRNA downstream 5298 36743293 ~ 36806197 (-) False G1171057
TU1335464 lncRNA downstream 5298 36750218 ~ 36806197 (-) False G1171057
TU1335520 lncRNA downstream 15735 36685097 ~ 36795760 (-) False G1171057
TU1335609 lncRNA downstream 49478 36754229 ~ 36762017 (-) False G1171122
TU1335494 lncRNA upstream 842 36815447 ~ 36818675 (-) False G1171057
TU1335508 lncRNA upstream 842 36815447 ~ 36818675 (-) False G1171057
TU1335620 lncRNA upstream 16315 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 16651 36831256 ~ 36831589 (-) True G1171133
TU1335545 lncRNA upstream 41272 36855877 ~ 36856985 (-) True G1171068
LOC118938284 mRNA downstream 2332 36805853 ~ 36809163 (-) True LOC118938284
XM_036940950.1 mRNA downstream 9491 36798804 ~ 36802004 (-) True LOC118938283
LOC110486257 mRNA downstream 16257 36791910 ~ 36795238 (-) True LOC110486257
XM_036940946.1 mRNA downstream 23445 36777935 ~ 36788050 (-) True LOC118938279
NM_001124745.1 mRNA downstream 23466 36784814 ~ 36788029 (-) True hsp70b
XM_036940952.1 mRNA upstream 3764 36818369 ~ 36821453 (-) False LOC118936524
XM_036940954.1 mRNA upstream 3764 36818369 ~ 36828427 (-) True LOC118936524
XM_036940951.1 mRNA upstream 10626 36825231 ~ 36828499 (-) True LOC110485160
XM_021557702.2 mRNA upstream 26176 36840781 ~ 36851302 (-) False LOC110486253
XM_021557701.2 mRNA upstream 26176 36840781 ~ 36852060 (-) True LOC110486253
TU1335514 other downstream 2473 36800029 ~ 36809022 (-) False G1171057
TU1335480 other downstream 4546 36799176 ~ 36806949 (-) False G1171057
TU1335459 other downstream 5298 36744772 ~ 36806197 (-) False G1171057
TU1335503 other downstream 65059 36744772 ~ 36746436 (-) False G1171057
TU1335452 other downstream 214854 36595832 ~ 36596641 (-) True G1171051
TU1335481 other upstream 4989 36819594 ~ 36828425 (-) False G1171057
TU1335522 other upstream 4989 36819594 ~ 36828425 (-) False G1171057
TU1335460 other upstream 11851 36826456 ~ 36828425 (-) True G1171057
TU1335637 other upstream 69413 36884018 ~ 36884340 (-) True G1171149
TU1335834 other upstream 383623 37198228 ~ 37198640 (-) True G1171337

Expression Profile