RNA id: XM_036940951.1


Basic Information

Item Value
RNA id XM_036940951.1
length 2298
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110485160
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36825231 ~ 36828499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCGGAGAGTTCGAGAAATGGCTAGAAATCATGAGTGCTATTTTTTAGGCAATGGGGGTGGTATATATTCTGGTGAAGTACATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGAAAAGAGAAGAGACACGTTCAACAGACCTCTACATTCATAAACTGCAACTAACTCCAAACCATCAAGATGTCATCAGCTAAAGGCCTGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCTGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGACGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGACAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGGGGCACCTTTGACGTGTCCATCCTGACCATCGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACGCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCCGACAACCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAACGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAGATATAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTCTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatg

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335489 lncRNA downstream 6556 36743293 ~ 36818675 (-) False G1171057
TU1335495 lncRNA downstream 6556 36810505 ~ 36818675 (-) False G1171057
TU1335494 lncRNA downstream 6556 36815447 ~ 36818675 (-) False G1171057
TU1335508 lncRNA downstream 6556 36815447 ~ 36818675 (-) False G1171057
TU1335469 lncRNA downstream 19034 36665169 ~ 36806197 (-) False G1171057
TU1335620 lncRNA upstream 2421 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 2757 36831256 ~ 36831589 (-) True G1171133
TU1335545 lncRNA upstream 27378 36855877 ~ 36856985 (-) True G1171068
TU1335537 lncRNA upstream 28940 36857439 ~ 36861278 (-) False LOC110485161
TU1335627 lncRNA upstream 39472 36867971 ~ 36868185 (-) True G1171139
XM_036940952.1 mRNA downstream 3778 36818369 ~ 36821453 (-) False LOC118936524
LOC118938278 mRNA downstream 10626 36811495 ~ 36814605 (-) True LOC118938278
LOC118938284 mRNA downstream 16068 36805853 ~ 36809163 (-) True LOC118938284
XM_036940950.1 mRNA downstream 23227 36798804 ~ 36802004 (-) True LOC118938283
LOC110486257 mRNA downstream 29993 36791910 ~ 36795238 (-) True LOC110486257
XM_021557702.2 mRNA upstream 12282 36840781 ~ 36851302 (-) False LOC110486253
XM_021557701.2 mRNA upstream 12282 36840781 ~ 36852060 (-) True LOC110486253
XM_036940960.1 mRNA upstream 28931 36857430 ~ 36929601 (-) False LOC110485161
XM_036940958.1 mRNA upstream 28931 36857430 ~ 37073344 (-) False LOC110485161
XM_036940957.1 mRNA upstream 28931 36857430 ~ 37073391 (-) False LOC110485161
TU1335510 other downstream 5690 36806297 ~ 36819541 (-) False G1171057
TU1335477 other downstream 6556 36744772 ~ 36818675 (-) False G1171057
TU1335514 other downstream 16209 36800029 ~ 36809022 (-) False G1171057
TU1335480 other downstream 18282 36799176 ~ 36806949 (-) False G1171057
TU1335459 other downstream 19034 36744772 ~ 36806197 (-) False G1171057
TU1335637 other upstream 55519 36884018 ~ 36884340 (-) True G1171149
TU1335834 other upstream 369729 37198228 ~ 37198640 (-) True G1171337
TU1337466 other upstream 2352275 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 2419653 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 2419653 39248152 ~ 39250310 (-) False LOC110486313

Expression Profile