RNA id: XM_021557706.2


Basic Information

Item Value
RNA id XM_021557706.2
length 2536
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110486255
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36850070 ~ 36854713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTCTCATCCAATGGAAATATAGGACCTGAGAGGTAGTGGCCACGTGGGTATTTTCTGGGTACAGCTCACAAACAGAGCAGCTATCTGAGCTCAGTGGGAAATACAGAGGCAGATCACCAGGAACCACATGGCAAGAAAAGCCAGGGAGGGGGCAACTGCCATAGCTTTTTCTTGGAATCTTGTCATGCTTCAGTTCAGATCACAATCGGAGCAAGAAAGCAGACAATGAAGCGAAACTGAAAATAAAGGCAATTTTCCAAGACAATGCCTTGCCCTTGTAATGTTTCATGTTCTTGAGGAAACAGGACAGTTACCACTATCACCTGATCATAACAAATTGTTGGTTGTTGAACTTGTGGCCCCCACTTTTGCTAAGAGAAAAGTTATGACAATTACTAGGGGTGGGAATATATTAGCTAGGCTCAACGTCATTTATATATGGATCTGGCTAGGCCTAGTTGACAACCTCGGAAAACATTACAGTAAAAAAATGGATCACACTTCAGGCATACCAAGAAGACCATGTCAGTCAATAGTATGTTACCTCATGCAAAGCCTAACTTATAGCTGTCTCGTTGAGGTCATCAAGACCTGAGAATGTTCTGGAATGACGTCACTCAGCGAGGACGAGTGGGCAGAGTGGGGCAAGATTTGGGGGACTTTTCTGGCTCAGTTACCAAGAGACTGCTCATCATCATGGGCAAGAGTTGTAAAGTGGTGGTGTGTGGTCTGGCTGCCGTTGGCAAGACTGCTGTCCTGGAGCAACTGCTGTATGCCAATCATATTGCGGgcTCAGAGCCCATGGAGACCCTGGAGGATATCTATATTGGCTCCATAGAAACGGACCGTGGCACTCGAGAGCAAGTGCGCTTCTACGACACCCGGGGTCTTCGTGATGGTCTGGAGTTCCCTCGCCACTACTTCTCCTTTGCAGACGGTTTTGTCCTGGTCTACAGCATCGACAGTAAGGAGTCCTTCAAACGCATGGAGGCCCTCAAGAAAGACATTGACCGCTTCCGTGATAAGAAAGAGGTGACCATAGTGGTGCTGGGCAACAAGCTGGACATGCAGGAGCAGAGGAACGTGGACTCTGAGGTGGCCCAGCACTGGGCCAAGACAGAAAAGGTGCGTCTGTGGGAGGTGTCTGTGGCAGACCGGAGGACCCTCATCGAGCCTTTTGTCCACCTGGCCAGCAAGATGACCCAGCCCCAGAGCAAATCATCCTTCCCCCTCAGCCGCAATAAGAACAAGGGGAGTGGCTCTGTCGATAGCTGAGGGAGAAGGGGGTTGGTCGCGGGAGGCAGCGAGGGTTGATGAAGAATGAGAAAGATTTCAGGAGACAGGGAGTgaaagagtaggagaggagaaacacAGTAGGCCGATTATTAGCCTATTACAAATACAGGAAATTTTAGGTCTGAACGAATGCACACTGACTGAATCAGAAACCAATGGTTTCATGGAGATTTTGACTGATATTTAGACTCATATTTGACCATTTAGGCTGATCTTTGATGACAAGTAAATGACATCAAAAGTAACACACATGGATAATCAAGAGGGTTGTTTGTATCATGGAGGATACATAAGGGTTTATATTACTGTTAGTTAATCAGGAGATTTGTTACACTACTGGCATGCCATCTACTCAGATGAAATATGGCAACTATTTTAGCATGGATGATCTGCATTTTATTTTAAGTTACAGTACATGAAACAAATCCATATTTTGGAGAATTAAAAAAACATTCCTCTATTCTTTTAGAGATGTCAGAAAACATGTTACTTCCTTTTGAGATCGCTTTGAGTTTTAAAATGACATTATTGTCTAAAGATTTAAATTGTTGTGACAGACTAGCAGTCTTATGTGATGTCCCTTGGTGAGCAGGGTGTTTGATGAGCTTCCTGCCTGCTGGACAGGCCCTGATGTGGCGACTGAGAGAAAGAGGCTTGCCTTGACTGTTATATCTATGGAGCTCTTGACCACAGCCCAAGCACGCTGAATTATCTGTACTTTATCAGAAACTCCTTACTGTCCTTGAAAACCATGGGGTGTCCTTGATCTTTGTTACTGAGCTGTTAAACACCATGTTGGTCAGACGAAATgcaaatgtatttcattttcaaattgtTTGTCTGACCGAAGCCCTTTAATGCCATATCAGGGTCCATAGTTATTGTGCAACATTTCATGTGTGTGTCGCTGAACAAGAAAGATGCCGTGGCCTAGTTTGGATGTAGTTTTTTTGCTTTGTGACTATTCACAGATCTTTATATTTGTATTATGTTTTTGACGTTGTGAATTTGCATCTTTATGTCTGTAAAATTGAAGTGCAtattattttcatttttattggGGCATTTATACTGATGCAATATAGAGCACAGTATTCATCTTTTAAAATGTTCTGGAGACTGGATAATCTTTTGCATGCCGTGTAAACAAATTAAAAGATTCCCTCTGCATCTAAGTTGAGGCTGTTGTGTATATCTTTTATTTGCATGATTTATGAAGTAATTAAACATAATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333670 lncRNA upstream 21535 36819594 ~ 36828535 (+) True G1169469
TU1333664 lncRNA upstream 31382 36743291 ~ 36818688 (+) False G1169468
TU1333667 lncRNA upstream 31382 36743291 ~ 36818688 (+) False G1169468
TU1333659 lncRNA upstream 31382 36763976 ~ 36818688 (+) False G1169468
TU1333656 lncRNA upstream 43870 36743291 ~ 36806200 (+) False G1169468
TU1333686 lncRNA downstream 1177 36855890 ~ 36862973 (+) True G1169482
TU1333785 lncRNA downstream 14436 36869149 ~ 36869517 (+) True G1169577
TU1333786 lncRNA downstream 15054 36869767 ~ 36870171 (+) True G1169578
TU1333789 lncRNA downstream 18436 36873149 ~ 36873369 (+) True G1169581
TU1333793 lncRNA downstream 20704 36875417 ~ 36875976 (+) False G1169583
XM_021559451.2 mRNA upstream 162565 36685096 ~ 36687505 (+) True LOC110487537
XM_036940940.1 mRNA upstream 172251 36672308 ~ 36677819 (+) True LOC110486247
XR_005035529.1 mRNA upstream 185726 36632446 ~ 36664344 (+) False LOC110486244
XR_005035530.1 mRNA upstream 185726 36632446 ~ 36664344 (+) False LOC110486244
XM_036940939.1 mRNA upstream 185726 36632447 ~ 36664344 (+) True LOC110486244
XR_005035533.1 mRNA downstream 322793 37177506 ~ 37178602 (+) True LOC118938285
XM_021557718.2 mRNA downstream 603521 37458234 ~ 37479500 (+) False LOC110486264
XM_021557719.2 mRNA downstream 603521 37458234 ~ 37479500 (+) False LOC110486264
XM_021557721.2 mRNA downstream 603521 37458234 ~ 37479500 (+) False LOC110486264
XM_021557722.2 mRNA downstream 603521 37458234 ~ 37479500 (+) True LOC110486264
TU1333669 other upstream 30530 36815447 ~ 36819540 (+) True G1169468
TU1333673 other upstream 37869 36784812 ~ 36812201 (+) False G1169472
TU1333676 other upstream 43234 36784812 ~ 36806836 (+) True G1169472
TU1333668 other upstream 43870 36770788 ~ 36806200 (+) False G1169468
TU1333680 other upstream 50102 36791911 ~ 36799968 (+) True G1169476
TU1334280 other downstream 788385 37643098 ~ 37644796 (+) True LOC110485168
TU1334503 other downstream 1167136 38021849 ~ 38022521 (+) True G1170195
TU1334615 other downstream 1354522 38209235 ~ 38209521 (+) True G1170288
TU1334651 other downstream 1407701 38262414 ~ 38262853 (+) True G1170322
TU1334795 other downstream 1735059 38589772 ~ 38590707 (+) True G1170455

Expression Profile