RNA id: XM_036940958.1


Basic Information

Item Value
RNA id XM_036940958.1
length 7368
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110485161
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36857430 ~ 37073395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTTTCGGCTTTGACAGTCAGTCTTGTCACACATCGTTTCGAAAGATGTTGGGTACGGACGACCACAGGGACAATCTGAAACGGAACGGGACAGTCACTCTCCCTACCCACAGTCCCCTCCTGATCCCTTCTGTACTTCCTCCTACCCACCAAGATCTACCAGGAGGTGAACAGGCCAATAGAAGGGAGCCTAGAGGTACCCTCTGAGTCAGAGGAGGGAGACAATGTCAGAGGgaAGGAAGCGTCCGTTCAGCCCACCCTCAGTgttagagatggaggaggacaggagcGGGTTAGGAGTGGGGATGGGGTTGACTGTGGACAGCGAGGTGTGCTGTGACCCCCAGGAGGAGGGTGTAGTCCTGGGGGAGCAGCCAGGTCCAGTTGGGGGCGCCCTGCCCTCCTCTGACCACAGCAGGcccaagagagagaggaaacagcgCAGTTATACACTGTGTGACGTGTGTAACATCCAGCTCAACTCCCCAGCCCAGGCCCAGATACACTACAACGGCAAGTCTCACCAGAAGAGACTCAAACAGATGAGCAACGGGAAGGTCCAGCACGGCAACACAGGCACCTCTGCCCAGGGCAACCCCCTCCTGGCCTCCCTGCCTGTCCCGGGACGGCCCCTGCAGCCTCACCTCGACCTCAAGCACTTCCTGCCTTTCAGGCTCAATGGATCGTCCCCCCTCAGCCTCTTCCCTAACTTCAGCACAATGGACCCGGTGCAGAAGGCGGTGATCAACCACACGTTTGGCGTCCCTCAGCCACTCAAGAAGAAACAGATAATCTCCTGTAACATCTGTCACCTGCGCTTCAACTCCCCgAACCAGGCAGAAGCACACTATAAGGGGCATAAACATGCCCGGAAGCTGAAAGCCATGGAGGCCCAGAAGAACCGTCAGCGTCGACTTGGGGAAGCCACGTccacaggcagggagagagaccgGGAACGAGACCGAGAACGGGACAGGGAGAGGGCTAAGACTGCTGCGACTGTTACACTTCCCACTGAGACCCTCCCCGCACTCATGGACACAGGCCCGATGGAGGCAACGAaTCTGCTGCCTGCTGACCTGGAGCGAGTGGTGAATTGTGAGGCTGTGAAGCTGGGCGAGAGCCCTGGCAGCAGCAGCTCTGTGATGCTGACTCCTGTATCTGAGGTGTCCTCCATGGAGCTGGCCACCCTGTCCCCCGGGCACCAGGGAGAGGTGTCCCCCTCCTCCCAGGCCTCAGAGAGCGGAGCCTCAGATACCAGTGGCCCCGAGCAGGGCCCAGAGGCCCCTGGAACAGCCCTGGAGTCAGGCAGCCAGCCAGACACCTCCAGAACAGAGGGGGGTGAGGAGGTCAAGGACCCCAAGAGGATCAAGCCACACCTCCACTGTCCCGTGTGCAAGGTCACTGTCAACTCTACATCCCAGCTGGAGGCACACAACAGTGGTACGAAGCACAAGCAGATGCTGGAGGGCCAGAGCGTCCAGCCGCGGCGCCGGGGGAAGGTGGCGGGGGCTGGGGGGCGCTCGGCCTGCAAGAGCAAGCGCCTGGGCACCAAGGGGAGCGTGGGGGTGCCCAGCAAGAACTTCCACTGCGAGGTGTGTGAGATCTATGTCAACTCGGAGACCCAGCTCAGCCAGCACATGAACAGCAGGAGACACAAGGACCGTCTGGCAGGAAAGCCCCCCAAACCCAAGTTCAGCCCCCACAACAAGAGCCAGCCCACCTCCAGCTTATCGAATGTGAGATGGGCTGGGTATGCAGGCGGGGCCGTGTCTGCCATGAAGAAAATGTTCAGCCAGTAcaacctcacctctctctctactcagaccAAACTGGCCTTCCAGAAGCAGCTGACCAAGAGCCTGACCACTGGCTTCCTGCCTAGCCCCCTCACCCAGCCCACCTTGTGCACCATGGCAACCAATCCTCTGGCTCTGCGCCACCCGGCGGGCACCACCTTCTTTCAGACGCCCTTCCTGAGCCCCACCTTGTTCCGGCCCGCCCCGGGGCCCCTGAGGGCCACGCACCCCTCCATCATCTTCTCCCCTTATTAATGACACAGTACAGCCCCccgtccctctgtccccctctaccAACCCTCTTGCCCCGCCTCCATTACTGTGACTCACATGACGAGGGCCACGCCACGCACAAACTATGCAGACCACAGGAGCcaggatggagagaacagagagaacgagGCTAACAACTGCTCCTGTCAGGGAGGCCATCCCCCCAAGACCCCGCCTCCTCTCCACCACGCCCCATCTGTCTGCTCCTTCTCCTGTGGTTGGTGGCCTGAGGAACAGGACACATCTCCAGGGACATACTGGTGCAGTCAGGAGGCCTCTCTCTTACACAGCCATTTCATGGGTCGATTTGGTTTGGATTCTTAATATTATTGTGTAATTTATTAGAGAACAAAAATAGATGTATCTGTTTAGTGTGGTTGCCACAAATAAGGTCCCTTTACGTCATGCTACTCCTCAGAACATTGTTTCTATAATTGGTTGGCTTGCTTTTTGTGGTTGTGGGTCGATATTGGGGATGCTAGCAGGTGAGCCCAATGCTCTCTGAGCTTGTGACTGTCTTCAGCCATATGTGGACCTGCAGCTCTGCAGACTTACGGACCCAAGTCTATGAGTGGGATCTGTCAGAACTATATGAACTCATATTTTTCCAGCAACACCCTTCCACCAAGCCCCTATCTCCCAAACCCTGTTACTGGGCTCTTGTCATTGGAACCCAGAGCTCTAAATTGATGTGCAGAATAAATGCTGaagccctttctctctctctctctctctttttctctttttatttctctttctctttctctcactctctttgcgTCACAGCCCAACATGGCCTTTCATAATTCATTTTTTACCCTGCATTCTCAGAATTAAGCACTCATTAAGGTCCTGAAAAGGTCAGCTTGTCAACTTGATTTTGTCTCAAGTTGCAGATCTGCCTCATTAAAGATCTTTGCTCCGTAGCAGCGCTGGTGCATTGGTTCTGACTGTCTCTATTTCTCCTGTTGCGGAACGGGAGGCACAAAATAATTTTTAAAAGCCTGGCTGTCTTATATTGTAATCTGCCATGGTTCCCTGTATCCCAGTGATTTTATAGTGCTTGATCCCCCAATTGTACTCCCTGAGCCATAGTCCTTAATTTTCTCTTGAGCTATCTCAGCAGGAGCTGATGGGTAGCAGTGAATGACAATTTCCCCTTGctcaaaaaaaaaacactaaggGGTGGAAATTACTTGATGGGTTTACAATCCTCAATTAAAGGTTTCCACTGCGCAGAGAGATGTGTGGATGATGGGGGTGTGAGAACACATTTCCCAGATCACTGATTGGATCATCGGGAATGGAGGGAAAGAAACAAAGCACAGTGCCATGGCAACCACATTAAAAGCACCTTAAACAGATTTACTTATGAAAGCAATGAAAATATgttctagtttttttttttgttattcctGGTGTGATTTTTCATAAACTCATGCCAGTTTGATTGAGCATTTTTCAATCACACAAACAATCAACTTGTGAAGATTCAATTGTATCGTTGTCATTATCCATGAGACAGGTCTGAATCTAAATCTCAGATCTAGTTACATTTTTAAAGCAATATGTTCAATCAATGTGTCTATGTTTCGAACGGTTATACAGTAGGAGAATATAGGATGTGGGGAGGTGGCTTTATCTGATTCTGAACAATGTATCTGTACCTCTACAGAGATGCTCTACAGCGTACCGTACTGTATTTGAAAGGCAAATTCCAAGTGGCCAGTGCTAAGAGTCATTTGAACTGATGGGTTGTTGTGATGCGATTTCCCTTGATGGTCAATCTCATGCTCATGTTGTGACTGTGGGTTGAGCTAAGCTATAAATAGCAGCTCTCATACTGTGGGATGGATGTTTcagccctctctctgtgttgacaTTGCTGGGCTTTCACCTTACAAGAGGAGCAGGACACAGCTATTATATGGATTACACAGAACAGCCAGTGTTATTGATGTCTCAAGCGCAGTAGAACACATAATCACATTCCCATGCCCCTCTCTCCTAAACAAGTAGACCCACCTTGAAACGAACACTCAATAGCtcccaccagaccagacccaatACTTGGGGCTCCTGATTTATCCCAACACCAACTCTCTTTGCTGGTTTATTACCAAACCCAACACTTACACCCAACCAGTCTACTTTAGCAACAGCAAAATGGGGGAAATCCTATGCAGTTGTTGTTCCCTTCAGTTCAGTCAGTGAAATAGTATTTCCATGTGTGTGACGCAGCAGCGCCACCTGCAGTGAAGACCATGTTATTGCTCTTCTAGATCAAACCCAGcactgtctctcctccatcttttCGAATCTCTTTGATTCTGTACATGTTTCTGAGGCCTTTGTCTTTGGGAATATGAAACCAAGCCGTCAGGTCTCTTTGCCATACCAATGTGATTCTCTCCAGTCACAGTAAGTTACTCAGTGAACCAGCCAGCCTATTGATCTCCAGTGTtcgttctgtctgtctatctgtctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctttacatGGGAACTCTTTGGTATTCAGACATTTAAGGacatttttaataaataaatgcataTAGAGAAGGCAAATTATCTATGTAGAAAATATAGAGTAAATATAGACATTTTATCAGAGTTGCTATTGTTATCTTTATCTTGATGAAACACTATCTTAGCTGAGGGTAGACTGTTGATGTAGGCTACAGCAGACACACGCTGTACATGGAAAGGAGAAATACTTTGCTtgttttttctgtttgttttattTACATGGTTTTACTGTGCTTGTTTTTTAACCTACAAAAGAGACAAATGTTGAATCAAAAGTTGGTTGAGTGATTTTTCTTTTTCTTGTTCAAATTTGAACTGAATTACGGAATTGAATTATTGACGTCACACAATAGATGTGGAACAAAAAATGCCTTTCAGATGTAATTATCCAGTATATCCCAAGAGTGTCAACCGCTGGTCAGTTTCTGGCTTTCTCAGGGCTTACAGTTTCAGCTACATTAATACCATACAATCATCCACACAATCAGAGCCTCTCAAACGTCATCGCCGTAGAGACGGGTCATACACTGTACTTGTGGATGACGTGAAACAATAGCCATACAGAACAGGATTGAAGAAGTTTTGATGTAAGATGTCCACACACGGAATATGACGGTCATGTAGAAGGACATTGTGATGTGTCCttgtctctctttttcactcaTCCGTCCTTGTGCACAGCCAAGGGAACCATGGATAGACCAGCCCAGATACAGAGCTCAGCCCTGGGTATAATAAGGAATCTGACACCATGGATAAAACAAAGCACTAGGATCACATTCTCTTCAATTGCAGTGTGGTGAAATGTCAATTATCTATCAGTCTACCAGTGACCTATTTCTTTCAGTAAAAGAACATATGCTGTATGTAATGACAGGCTATGAAACTGCAAGGCAGCCATGTTGACTGAGGCTACTGCCGGTGAGGTGGGAGGAGCTGGCGTTTCTCAAAACTGAGTTTCCTTGGTATAGGATCTGCATATCACTGATGTCAAAGCACAGCTTTCATTTCCCCCTATTTTAGAAATTACTTTTCACAGCAGGCATTCAACGCTGCAAAGATAATTGCATGAAGGTGAATGGAGAAAGGTGTCTGCCCCCATCCGAGTCCTGCCTCATTAGctctgtttatacctggttccaACCTGCtgcctttgtcctgatcttgttcacattctgattgtgcccacatttttagacCAGTGTAGACAATTAAAAGACGCATTGTGATCCGATCTTATAAGTGTAAACAGACAAGATCAGGACGAAGGTTGCAtgttaacagcaggtataaacagggctatTGACAGAGAAAGGAGTGACATGCTGAGGATCAACAGTCTGAATGATATTCTGGATTATCTGCACAGTATTCACACCCAGATGGTTTCAGTGGGCAGGACATCATAACATCATACTCTGGAGCGGCTCGAGATAATGGAGAGAGATTAGGTTCTGAACAATATCATGGAACGGTACTGGATTCTGGACCACCaccacagctcagctcagctctgtTCTTCACAGCTTTTCTCTGTCCTTCGTGTACAGAGCGGTTCCTGTGTCATGTGCTCTTGTTGTCTGAACAGAAGCCAGAGTCAGTCTCTTGCCATAATGACGCCAATCATCAAAGCCGCGTCTGTCAGGAGACTCTTCTGGACTGTAATGAACTGTAACAAGCATACCATAATGATGTGAATTTTGTTCAATCAGCTATTCATTTGTTAGCTTCCCACCCATGTCCTTGTTAATTGGAAGTGGAGCCCGTTCTCATAATGTAGTTGGACAGCATTGTTGTTCTCACTACCAGTATAGGTCCTTATGCCAGCTCTCCCCGTGTGGAAACGTTAGGTAAGCAGAAACACACCTCTCCCATTGCCAAAACCAGGGAAGTTCAAGTCAAGTGATCACATCCATGTCTGAAGCCAGTCTCAGGATGACAGAAGAAACATGGAACCTTGCAAGACCTCTCCACAAACCCTTACATATCCACAACACGGATATATTCATCTCTACCTGAATGCTGTGAAGTGACACCCGTTTATTTTGCTGTGGCGGTCAGTCTGTCAGTCCCTggttcctccctctctgtatcaACCCTACAAGGACACGGAGTCAGTTCAGTGTGTACGTCAAGTTGTACAGTGCATATCAATACCTGTGACTGCTTGGCTGCggttagacaggcagcccaattctgatattctttttcacgaattggtcttttgaccaatcagatcagctctgaaaaagatctgatgtaaaAAGATCTGATTGAAGAACTGAATTggcctgcctgtgtaaatgcagccctTGTGTTCCATTTAAAGCCTATGGTACATTACAAAACATGTACTACAATGTAGAAGATATTCTATGAGAGGACATGACCAGTATTTATTGTAGCACCTTTGTCACTGTGTTCACAGTACATTTGATTACAATGATCTTCATGATGTACAATAGGAATTGTAAGGTGGAATAGAGAGTAAGATCATTTGACACGCTATTGAGTCTTTgctttaaatgtttgttttttttccgTCTGTATAGATAATGCCAGGTTGGATATGAATGACAGAGAAataaatgggggagagagaaatagacagagggaGAAGTTGGATAGTGAAATAAATCGATTAGATCTTTCACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335545 lncRNA downstream 445 36855877 ~ 36856985 (-) True G1171068
TU1335621 lncRNA downstream 25841 36831256 ~ 36831589 (-) True G1171133
TU1335620 lncRNA downstream 26224 36830920 ~ 36831206 (-) True G1171132
TU1335494 lncRNA downstream 38755 36815447 ~ 36818675 (-) False G1171057
TU1335790 lncRNA upstream 27943 37101287 ~ 37101935 (-) True G1171293
TU1335793 lncRNA upstream 33470 37106814 ~ 37107063 (-) True G1171296
TU1335822 lncRNA upstream 106490 37179834 ~ 37180108 (-) True G1171325
TU1335827 lncRNA upstream 113833 37187177 ~ 37187453 (-) True G1171330
TU1335828 lncRNA upstream 114587 37187931 ~ 37188219 (-) True G1171331
XM_021557701.2 mRNA downstream 5370 36840781 ~ 36852060 (-) True LOC110486253
XM_021557702.2 mRNA downstream 6128 36840781 ~ 36851302 (-) False LOC110486253
XM_036940951.1 mRNA downstream 28931 36825231 ~ 36828499 (-) True LOC110485160
XM_036940954.1 mRNA downstream 29003 36818369 ~ 36828427 (-) True LOC118936524
XM_036940952.1 mRNA downstream 35977 36818369 ~ 36821453 (-) False LOC118936524
XM_036940961.1 mRNA upstream 42095 37115439 ~ 37120056 (-) False LOC110485163
XM_036940962.1 mRNA upstream 42095 37115439 ~ 37120056 (-) False LOC110485163
XM_036940963.1 mRNA upstream 42095 37115439 ~ 37120056 (-) True LOC110485163
XM_021557711.2 mRNA upstream 47244 37120588 ~ 37133109 (-) True LOC110486259
XM_021557713.2 mRNA upstream 60475 37133819 ~ 37151534 (-) True LOC110486260
TU1335481 other downstream 29005 36819594 ~ 36828425 (-) False G1171057
TU1335522 other downstream 29005 36819594 ~ 36828425 (-) False G1171057
TU1335460 other downstream 29005 36826456 ~ 36828425 (-) True G1171057
TU1335510 other downstream 37889 36806297 ~ 36819541 (-) False G1171057
TU1335514 other downstream 48408 36800029 ~ 36809022 (-) False G1171057
TU1335834 other upstream 124884 37198228 ~ 37198640 (-) True G1171337
TU1337466 other upstream 2107430 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 2174808 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 2174808 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 2174808 39248152 ~ 39250310 (-) True LOC110486313

Expression Profile