RNA id: TU1335537


Basic Information

Item Value
RNA id TU1335537
length 3840
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC110485161
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36857430 ~ 37073395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATTGAGCATTTTTCAATCACACAAACAATCAACTTGTGAAGATTCAATTGTATCGTTGTCATTATCCATGAGACAGGTCTGAATCTAAATCTCAGATCTAGTTACATTTTTAAAGCAATATGTTCAATCAATGTGTCTATGTTTCGAACGGTTATACAGTAGGAGAATATAGGATGTGGGGAGGTGGCTTTATCTGATTCTGAACAATGTATCTGTACCTCTACAGAGATGCTCTACAGCGTACCGTACTGTATTTGAAAGGCAAATTCCAAGTGGCCAGTGCTAAGAGTCATTTGAACTGATGGGTTGTTGTGATGCGATTTCCCTTGATGGTCAATCTCATGCTCATGTTGTGACTGTGGGTTGAGCTAAGCTATAAATAGCAGCTCTCATACTGTGGGATGGATGTTTcagccctctctctgtgttgacaTTGCTGGGCTTTCACCTTACAAGAGGAGCAGGACACAGCTATTATATGGATTACACAGAACAGCCAGTGTTATTGATGTCTCAAGCGCAGTAGAACACATAATCACATTCCCATGCCCCTCTCTCCTAAACAAGTAGACCCACCTTGAAACGAACACTCAATAGCtcccaccagaccagacccaatACTTGGGGCTCCTGATTTATCCCAACACCAACTCTCTTTGCTGGTTTATTACCAAACCCAACACTTACACCCAACCAGTCTACTTTAGCAACAGCAAAATGGGGGAAATCCTATGCAGTTGTTGTTCCCTTCAGTTCAGTCAGTGAAATAGTATTTCCATGTGTGTGACGCAGCAGCGCCACCTGCAGTGAAGACCATGTTATTGCTCTTCTAGATCAAACCCAGcactgtctctcctccatcttttCGAATCTCTTTGATTCTGTACATGTTTCTGAGGCCTTTGTCTTTGGGAATATGAAACCAAGCCGTCAGGTCTCTTTGCCATACCAATGTGATTCTCTCCAGTCACAGTAAGTTACTCAGTGAACCAGCCAGCCTATTGATCTCCAGTGTtcgttctgtctgtctatctgtctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctttacatGGGAACTCTTTGGTATTCAGACATTTAAGGacatttttaataaataaatgcataTAGAGAAGGCAAATTATCTATGTAGAAAATATAGAGTAAATATAGACATTTTATCAGAGTTGCTATTGTTATCTTTATCTTGATGAAACACTATCTTAGCTGAGGGTAGACTGTTGATGTAGGCTACAGCAGACACACGCTGTACATGGAAAGGAGAAATACTTTGCTtgttttttctgtttgttttattTACATGGTTTTACTGTGCTTGTTTTTTAACCTACAAAAGAGACAAATGTTGAATCAAAAGTTGGTTGAGTGATTTTTCTTTTTCTTGTTCAAATTTGAACTGAATTACGGAATTGAATTATTGACGTCACACAATAGATGTGGAACAAAAAATGCCTTTCAGATGTAATTATCCAGTATATCCCAAGAGTGTCAACCGCTGGTCAGTTTCTGGCTTTCTCAGGGCTTACAGTTTCAGCTACATTAATACCATACAATCATCCACACAATCAGAGCCTCTCAAACGTCATCGCCGTAGAGACGGGTCATACACTGTACTTGTGGATGACGTGAAACAATAGCCATACAGAACAGGATTGAAGAAGTTTTGATGTAAGATGTCCACACACGGAATATGACGGTCATGTAGAAGGACATTGTGATGTGTCCttgtctctctttttcactcaTCCGTCCTTGTGCACAGCCAAGGGAACCATGGATAGACCAGCCCAGATACAGAGCTCAGCCCTGGGTATAATAAGGAATCTGACACCATGGATAAAACAAAGCACTAGGATCACATTCTCTTCAATTGCAGTGTGGTGAAATGTCAATTATCTATCAGTCTACCAGTGACCTATTTCTTTCAGTAAAAGAACATATGCTGTATGTAATGACAGGCTATGAAACTGCAAGGCAGCCATGTTGACTGAGGCTACTGCCGGTGAGGTGGGAGGAGCTGGCGTTTCTCAAAACTGAGTTTCCTTGGTATAGGATCTGCATATCACTGATGTCAAAGCACAGCTTTCATTTCCCCCTATTTTAGAAATTACTTTTCACAGCAGGCATTCAACGCTGCAAAGATAATTGCATGAAGGTGAATGGAGAAAGGTGTCTGCCCCCATCCGAGTCCTGCCTCATTAGctctgtttatacctggttccaACCTGCtgcctttgtcctgatcttgttcacattctgattgtgcccacatttttagacCAGTGTAGACAATTAAAAGACGCATTGTGATCCGATCTTATAAGTGTAAACAGACAAGATCAGGACGAAGGTTGCAtgttaacagcaggtataaacagggctatTGACAGAGAAAGGAGTGACATGCTGAGGATCAACAGTCTGAATGATATTCTGGATTATCTGCACAGTATTCACACCCAGATGGTTTCAGTGGGCAGGACATCATAACATCATACTCTGGAGCGGCTCGAGATAATGGAGAGAGATTAGGTTCTGAACAATATCATGGAACGGTACTGGATTCTGGACCACCaccacagctcagctcagctctgtTCTTCACAGCTTTTCTCTGTCCTTCGTGTACAGAGCGGTTCCTGTGTCATGTGCTCTTGTTGTCTGAACAGAAGCCAGAGTCAGTCTCTTGCCATAATGACGCCAATCATCAAAGCCGCGTCTGTCAGGAGACTCTTCTGGACTGTAATGAACTGTAACAAGCATACCATAATGATGTGAATTTTGTTCAATCAGCTATTCATTTGTTAGCTTCCCACCCATGTCCTTGTTAATTGGAAGTGGAGCCCGTTCTCATAATGTAGTTGGACAGCATTGTTGTTCTCACTACCAGTATAGGTCCTTATGCCAGCTCTCCCCGTGTGGAAACGTTAGGTAAGCAGAAACACACCTCTCCCATTGCCAAAACCAGGGAAGTTCAAGTCAAGTGATCACATCCATGTCTGAAGCCAGTCTCAGGATGACAGAAGAAACATGGAACCTTGCAAGACCTCTCCACAAACCCTTACATATCCACAACACGGATATATTCATCTCTACCTGAATGCTGTGAAGTGACACCCGTTTATTTTGCTGTGGCGGTCAGTCTGTCAGTCCCTggttcctccctctctgtatcaACCCTACAAGGACACGGAGTCAGTTCAGTGTGTACGTCAAGTTGTACAGTGCATATCAATACCTGTGACTGCTTGGCTGCggttagacaggcagcccaattctgatattctttttcacgaattggtcttttgaccaatcagatcagctctgaaaaagatctgatgtaaaAAGATCTGATTGAAGAACTGAATTggcctgcctgtgtaaatgcagccctTGTGTTCCATTTAAAGCCTATGGTACATTACAAAACATGTACTACAATGTAGAAGATATTCTATGAGAGGACATGACCAGTATTTATTGTAGCACCTTTGTCACTGTGTTCACAGTACATTTGATTACAATGATCTTCATGATGTACAATAGGAATTGTAAGGTGGAATAGAGAGTAAGATCATTTGACACGCTATTGAGTCTTTgctttaaatgtttgttttttttccgTCTGTATAGATAATGCCAGGTTGGATATGAATGACAGAGAAataaatgggggagagagaaatagacagagggaGAAGTTGGATAGTGAAATAAATCGATTAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335545 lncRNA downstream 454 36855877 ~ 36856985 (-) True G1171068
TU1335621 lncRNA downstream 25850 36831256 ~ 36831589 (-) True G1171133
TU1335620 lncRNA downstream 26233 36830920 ~ 36831206 (-) True G1171132
TU1335495 lncRNA downstream 38764 36810505 ~ 36818675 (-) False G1171057
TU1335627 lncRNA upstream 6693 36867971 ~ 36868185 (-) True G1171139
TU1335630 lncRNA upstream 15018 36876296 ~ 36876584 (-) True G1171142
TU1335634 lncRNA upstream 20045 36881323 ~ 36881548 (-) True G1171146
TU1335640 lncRNA upstream 25001 36886279 ~ 36886509 (-) True G1171152
TU1335641 lncRNA upstream 28770 36890048 ~ 36890282 (-) True G1171153
XM_021557701.2 mRNA downstream 5379 36840781 ~ 36852060 (-) True LOC110486253
XM_021557702.2 mRNA downstream 6137 36840781 ~ 36851302 (-) False LOC110486253
XM_036940951.1 mRNA downstream 28940 36825231 ~ 36828499 (-) True LOC110485160
XM_036940954.1 mRNA downstream 29012 36818369 ~ 36828427 (-) True LOC118936524
XM_036940952.1 mRNA downstream 35986 36818369 ~ 36821453 (-) False LOC118936524
XM_036940961.1 mRNA upstream 254161 37115439 ~ 37120056 (-) False LOC110485163
XM_036940962.1 mRNA upstream 254161 37115439 ~ 37120056 (-) False LOC110485163
XM_036940963.1 mRNA upstream 254161 37115439 ~ 37120056 (-) True LOC110485163
XM_021557711.2 mRNA upstream 259310 37120588 ~ 37133109 (-) True LOC110486259
XM_021557713.2 mRNA upstream 272541 37133819 ~ 37151534 (-) True LOC110486260
TU1335481 other downstream 29014 36819594 ~ 36828425 (-) False G1171057
TU1335522 other downstream 29014 36819594 ~ 36828425 (-) False G1171057
TU1335460 other downstream 29014 36826456 ~ 36828425 (-) True G1171057
TU1335510 other downstream 37898 36806297 ~ 36819541 (-) False G1171057
TU1335514 other downstream 48417 36800029 ~ 36809022 (-) False G1171057
TU1335637 other upstream 22740 36884018 ~ 36884340 (-) True G1171149
TU1335834 other upstream 336950 37198228 ~ 37198640 (-) True G1171337
TU1337466 other upstream 2319496 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 2386874 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 2386874 39248152 ~ 39250310 (-) False LOC110486313

Expression Profile