RNA id: XM_021557717.2


Basic Information

Item Value
RNA id XM_021557717.2
length 4971
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110486263
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37426664 ~ 37455479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACTGGGTGGTATCACAGGGAGTCCCGTCATTTGAGTCAGGGCACACATGCCTCAGCAGTGAGAGGCTCCACTCCCGTTGGTTGGCCAGCATCCCAGGGTAGAcgcaaagacagagagagagagagagagagactgagaggactGAGAATAAGAGAAAAAGGAGGAAAAGAAAGACAGCAAGAAGACAAGTAGACTAGAAAGTGGGAAGAGGAAAAGCTCCAAAGAAGTGGAAGACCATGGCGGATCCAGCAGGCTTGCAGCAGGAGCGAGTTGCTCTGACCGAGGTGTCTGACGACGAGGAGGTGTCCCTGGTAGCCGCAGCGGTCCAGCCCGCCACCGACAGCGATGAAGACGACATTTCAGAAGAAGTGGACCTGGTGCTGGCCACGGGCTCGGGCACCAAGAGTGAGGCGCAGATCAACGGGGTCATGGTGCTGACCCTGCTCGACAAGATCATCGGGGTGGTGGACCAGATCCAGCAGACCCAGAACGGGCTGGAGGCCAGACAGCAGGACATGGAGAAGTCTGTTTCTTGCATCCAGGGAGAGCTGGCCAAGCTGTCCAAGAGCCACACTGACACGGCCAACACCGTCAACAAGATGCTGGGCAAGGTGCGCAAGGTCAGCGTCAACGTGAAGACGGTCCGCACCAACCTGGAGAAGCAGGCGGGCCAGATCAAGAAGTTGGAGAGCAACGAGAACGAGCTGCTCAAGAGACGGCACTTCAAGGTTCTCATCTACCAGGATGAGAATAAGGCCGCTAAAGCCTCTCTAAAGTCGCCCAAGGTGGCAGAGAATGTAGCTGAGGGCTGCTCTGTGGAAGGGGGGCTGGAGCAGATCCCTGAGGAGGGGGGCGAGGCGGCGCTCACTGGCCTCAACTCAGACGAGGAGGTGGAGATCGAGGAGATCATCGAAGAGTCCCGGGCGGAGAAGATAAAACGCTCCAGCAAGGCGCGCGTGGACAACATCAAGAAGGCCTTCTCCAAAgagcagagggagaagagagcgcAGAAGACCAAGGACAACCTGGAAAAGACCAAGCAGAAGACCAGGGATAACCTGGAGAAGACCCGGCAGAAGACTCACGACAAGCTGGAGAAGACCAAGCATAGCCTGGAGAAGAAGATGGGCAAGCTGGGCAACAAGATGACCCCCAACATGGAGCGGAAGGAGAAGCTAAAGGGCTCCAAGGAGATGTTGAAGAAGTCTCTGACCCCCGACCACACCGTCTACGCCCGCTCCAAGACGACCGTGTACCGCGTGCCACCCTTCACCTTCCATGTGAAGAAGTTCCGGGATGGAGAGGTGGAAGTGGTGCACACAGAGGGcacagagatggaggaggtggcCGAGAATGAGGCCCTggaggcgggagagggagacgtggaggtggaggagctggTGAGAGTAGTAGACACCCCAGAGATGAGTGCTGTCCTGGAgttggatgaagaggaggaggagctggtgAGAGTAGACACCCCAGAGATGGCAGCTTTCCTGGAGGTGGCTGAGGACCAGGTGGCAGAGCATCTGATCAGGCTGGGGAGTAAGGTCCCTGTGGTGAAAACAAGCATGAAGACAACCAGCAAATAACTCTGTCTACAGGGCCCAGCAGGATTGGAAGAATGATACAATAGAGGGATGAGGAgataggggagaagagagagggggagagtaaaGAAGAGGAGAGTAACATCCTACATTTGGATGACAGTGACACAGCATGCATGATAAGGACTGTCGGGACAGTGTTCACAATCTACTCATCTTATAATAAAAATTATAATAACacaatatgccatttagcagacgcttttatccaacgCAACTTACAGTCATACGTGCCTACATACATCTTGTTTGAGAAGGAAAAAAATGACGCATCAGGAATTACTTTCAATGTAGTATGTGCTGTtctagacaacaacaacaacaaaacatttaaccCCGCAATTTTGTTTCTTCCTTACATATTTTCTTGTCTTTTAGTTTGTGAATGACTCTGGTTGGTCTAGTCTGGGATATTGCTTGTTGatataattttttgttgttgtttttgaaaTAGAATGACCACAATGCTAAGGGAATAAATAGTAGTTGCTATTGTGATTTGATGTACAATAATTGCTAACGTAGGATAAACAGTACATAACAATGTATATGGAAATAtcccccactgggcacagacgtcaattcaacatctattccacgttggttcaacgtaatttcattgaaatgatgtggaaacaaagttgattcagccagtgtgtgcccagttgtGGTGGTATCTTGAGATTTTCTGATTTGATGGTTGGTGGTCATGTGATGTGCAGGTCAGAGAAATTACGTTTTGACAAATGAAGAGAAAGAGCACACAGTGGAAACACCTAAAGATGGTTTCAACGTGCATGGGGAGAGACACAGGGGACCGTCTTTTCCTTGACTGAAGAGTTTACAGATCGGTTAAACAAATGCTCACAGCCATTTTGAGCAGCCAACTTTCTACTGTAAGTGTGGGCATCCAAGCTCTGTCAACATGTCAAGGTTCTGAAAGGACGAGATAGATAAGATAATGATAAAGATTAAGATAGTTCTCACTTTTCTTAGAGGAGCACTATGAAGCTTTTATTTCTGATCAACAGTGTGGCCCTATTGGTTGATTGTTTTCATTTTGGAGGACCGAGATGGAGGGTCACGGCAAATGCAATATTaaaaaagaagaggaagagactCACTGATTGGCATAAATGGAACTATTTTTGTGCGTGTGTAATGTTTCAGCCGCAATCTTGAGCCAAACAGGGAAAAACTAGTGTATCTTTAAATGATGTCATGGAGTTGATGGATGCCAGACGTGTAAAGTAATCCTCCTTTCACATAAAAAACAGGATCGCAACagatcctgtttgttttgttttgaaatGGAGAATGAGAAGGATGAAGGATTAGTGACGACTCGAAAGAGATGTGAATTTAGTTGCATAGTTTTACcttcctttaaaaaaaagaatgtcTCATTAAGTTTCTAAGTTGTACTATAGTGTGATATCTGGAAAATAGTTCTCCTTCTCTCAGTTTTTAGTTACCAGTGTAACCACCAAACTACCTGGTTGTTACTAGGGCTTGTCACTGATGACAGGAGAATGACATTTTGAGCCATCGTTTAATCAAAGTTTCCTAGTGCCATCGTTCTGTAGAAGTTCACTTTTTTCactgttttttctctctcactgtgcTTACATGATAATGTTCATTGTACTGACACACATTGTACAAATGTATGCACGTATGCTCACAGTGCTACAAGAAtcatacatgtactgtacatatatgcTATAATAAGCACAGACATACCTGTGTTAACCTGCCACGTTACTGTTACTCCAGAGGCTTCTCTCCTGGAAGAGGAGTCTGTCTGAGATTGACAGAGCCTTGCTTATTGAATCTATCACCATGGCCACAGCTAACGACAGGATATATCCAGCATTTCACCTGGACTGCACTGGGTGCTGTGATTGTGGGGAGAAAAATTAGAGAATCTTGTAGGAACCCCTTCAGCATATGTCAATATGCCAGGTGACAGTTTAATGAAAGTCTATAAGTGACATATAGAAATGTAAGTGCTATCCAATTTTGTTTGTGCCGGCAGCAAATTACAAGGGATTGTGAATAATGACATGGCAGTtacaaaggtggaagaaaaaaaGTAATATCCGTTCCTGGACCTCAGTCTCTGTCTATTTGAATTACTTGTCAgcttgtttgtgcctgtgtggtCTGGCAAGGGTCTGATATAGGGAGACGATGGTGATTAGAATGGATGATTTGAGTTTGACGTGAAGTGAGACCAGTAAATGCAATACAAGCTAAAAGCTGTTGTCTCGTGTTCTTTCTCTACCTACAAGACGTGCCTCTGGAGAACAAAGTAGTGAGACTAAGTACAGAAGGACTGAAAGCACACAGGGCCTGGCTCGAAGACAGCGCTACGGAAGGCTTTTCTACGTGTCTCCATAGCTCTCTGTGTCTGACCAACCTTGATGAAGGGGCCGGGGTAGAGAGGGGAGGTCTCTGTGGAACACCATTAGGATAATCAATGAGGCAGGAATCTGATTAAGGAGAGTGCTTTCTCTGAGGAGAGTGAGacggaacacagagagaggacgtgtgtgagagagaggggggagtggtcagtgcagagagaaggagagatgatgCAGTCAAAAAGAAACCAAAGATATTCCTCAAAAAATATGTAGGTCTTTGTGCAGTTCACATTTTGTTTTTACTTAATTTTTTTACAAGGCTGAAATGGATTCTCATTACATAAATGCCAAGGTGAATACTGAACACACAGATACATTAAAAATTGACCAAGTTTTTGTCAAACATGAGCTAAGTTTACCACCATCTCTAAACACCCCTCATCTCCCCCAAGGAGATTCATAGCATTTCCTACCTTCTTCAGGAGAGAGTGGAGATACAAACAGTGACCGCTCATCTTTCAACTGTTTAATTTATTTGCCATGTAGTGTAGTCTCACAGCATTGTCAGTCAATATGCAGTTCTTTGTAAGAAATGATCAGTCAAACTACCGCAGGTTACCAGGGTTGGAgccaattccatttaaattccagtaaattcagaaagtaaaccaaattgcAATTCCAAATGTTCCTAACTGAAAAGCATTTAAGATCATTGGAATTttagtgtacttcctgaattgtctGGAATTGAAATGCAACTGACCTCAAGCCTGCGGGATACTGTACGTATCCTGAGCACTGCCATTTTCAACTGACCTCAACCCTGCGGGATACTGTACGTATCCTGAGCACTGCCATTTTCAACTGAACTGAGATGATAATATCTCCGACTGATCTAATAACGAAGCTTGCTTTTTCTGTTGAATTAAATGACCATTTTTGTCAAACCACTTATATATCAATAAACGCTATATGATTTA

Function

GO: NA

KEGG:

id description
K19387 PTRF; polymerase I and transcript release factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335927 lncRNA downstream 268 37425792 ~ 37426396 (-) True G1171418
TU1335828 lncRNA downstream 238445 37187931 ~ 37188219 (-) True G1171331
TU1335827 lncRNA downstream 239211 37187177 ~ 37187453 (-) True G1171330
TU1335822 lncRNA downstream 246556 37179834 ~ 37180108 (-) True G1171325
TU1335793 lncRNA downstream 319601 37106814 ~ 37107063 (-) True G1171296
TU1335967 lncRNA upstream 22813 37478292 ~ 37479491 (-) True G1171454
TU1335992 lncRNA upstream 62647 37518126 ~ 37520420 (-) True G1171475
TU1336011 lncRNA upstream 89321 37544800 ~ 37545171 (-) True G1171493
TU1336012 lncRNA upstream 90769 37546248 ~ 37546459 (-) True G1171494
TU1336032 lncRNA upstream 119294 37574773 ~ 37575012 (-) True G1171514
XM_036939701.1 mRNA downstream 1248 37398223 ~ 37425416 (-) False rbtstat3
XM_021556151.2 mRNA downstream 1262 37398223 ~ 37425402 (-) False rbtstat3
XM_021557723.2 mRNA upstream 31021 37486500 ~ 37502910 (-) True LOC110486265
XM_021557725.2 mRNA upstream 133469 37588948 ~ 37600359 (-) False LOC110486267
XM_021557724.2 mRNA upstream 133469 37588948 ~ 37604528 (-) True LOC110486267
XM_021557727.2 mRNA upstream 153785 37609264 ~ 37616984 (-) False LOC110486268
XM_021557726.2 mRNA upstream 153785 37609264 ~ 37616985 (-) False LOC110486268
TU1335834 other downstream 228024 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 542324 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 598239 36819594 ~ 36828425 (-) False G1171057
TU1337466 other upstream 1725295 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 1792673 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 1792673 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 1792673 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 1872737 39328216 ~ 39331239 (-) True LOC110486318

Expression Profile