RNA id: XM_036940967.1


Basic Information

Item Value
RNA id XM_036940967.1
length 3416
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110486268
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37609264 ~ 37617259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCAAGCAAGTGGACTGTATCAGCTAGGCCTATCCTTGAAATGATCCGGTTGACATCACTACAATGAACTGTAAAACATACTGGATATGATGGGGATAGTTTCATGAGTTCATCCAGTTGTTGGGATACTGTAACCCTGTTACATGTCAGAGAGAGCTGAGTCTCGAGACGTTGATCTAATTGAATTGAATAGAAATAGAAGCAAACGGGAGCTGGGAAGGGTATTCAGGGTTCCCCTCGCTCTCATTTTTTCTCGGACTGTTATTTATGACGGACTTGTTTTTGTCAACGGTCCAACACTCGGACTGTCGAAACAAACAGTTTAGACCTGGTAAAGTTGACCCTAGACgttgatcttgggtcagtttcgCATTTCCCCTGCTAATGATTAATGTTAGGACTGGGGAAGGGGGAGCTGTTGATCCTACACCAGCCACGTAGCCTACTGAGCGATGCAAAGAGCTTTTAAACAGTTTCACCCGGCAGTAAGTAAATCTGACTAAAACGGCAGAAAATAGCCGTACGAGATGCGGTGCGTCATTGTTGCTACTTGGGTCACAGTTGTTGCGCGTCATATTCCACACACACGGAGCAGTACTATTGGTTACATTTACACTTCGAAATTCCATCCTTTGTCCATTTGGTACATGGTGGAATTCGGGATCAGAGGCCCTGCCACCTCTGGTGCCTGAGGCTTGGCTCTTTTTCCATCTCTAGCCTATGGCCAATTGAGGATCATGCTCTTTTAAGAGTTCTTGATGCCTTCTTGCTTCATACCTATTCTCCAAGGGCACCACCTGAAGCCTTCCAGTTTAGTATAGGCCTATCACTTTTTTAGTCCAGCCCTCAGAGGCAGGTGCAGCTCACCTTTTTTTCTGCCAAGCAGTCATATCATCAAACAATGGAGGAAGACTGGAGCTGGAAAGAGGAGACCCAGAAGAAGGTGTCAAGGTTCCTAGTGAAGCTGAGGCTGAAGAATCCTTTGCAGATTACTGATAACAGGTACAGTTCGGAGTCAGAGCGAGCTAACGCTGAAGTTCGCCAGGGGGCAGTCATGCAGTCTTCAGTAGAGGGCAAAGCTCTCCGCAGCGCGCAAGGAATTATCCATAATAACTCACCTCAGCACTCCCCACCCACTGGCACTGATAAGAGTTGCAGAGGGGCAGAGGGATCTACATCCCCAGATAACATTGACAGCGACAGGAAGAAGATCAAGTTCCCACTCCTCTTCACCAAGACAGCCGTGGCTGGGACCACCACCAACCCCCTTCTCACTGAGAATGACCGGCCCAGCGGGAAGCTTTCTGCCAAGGCAGAAAAGGCCCATAAGACTGTGATGGTGGCCGGTATCCCAGAGGAGATTGGTGTTGGAGCTAAGGTCATGCAGAAGACCTTACCGGCCATATCCAAGTTCAGCTGGTCACGGCCCAGTCCAAGTGAAGAAGATGACAAAGTCCAGGGCAAAGTCGAAGACTTCCGCAAGACCAAACTAGGTGAACAGAAAGAAGATAACGTCCCGCCAATAGCCAAAGAACCCCGGAGAAAAGGGTCCTCCCATGGAGCAGAGCAAGGCAGAGGCAGGGACTATAGCAGGAGGAAGGCGCCCCTCTCCTACGACATACAGCACAGACTCAACCAAGCCATGACAGATTCAGACAGACTCAAAGCTAGAGAGATCACCAAGAGAAGCGGAACCATCCCCTGCGAGAATCTCCAGCAAAGGCCCAACCGACAGAAGCCAGAGTTGGAGCGATTCAAACCCAGGGATATCACCAAGAAGAGGGCCATCATTCCATGTGATGAGCTGCAGCAAAGGCCCCATCAGCCAATGCCAAAGCCAGATAAAGCTGCCCTGGTTAAACTCCCAGCGATTCCACGGTGGACGGGCTCCATCTCATATGAGGAGTACCAGAAGCTGAACCAGAAGATGCCAGACAAAACCATCAACACAGAGGACCTGGAGAAGTTCTTAAACTCACTGGGCATTACTCATATTGAAGACCTGGCAACTACGGTGCCTGACGATCCCCTGATCGATGCCCAGTCTGATGCCTTCAAAGAAGTCTTTGAGCAGTTTGCAAAGAACAGCGATGGCTCTCTCAACGAGGAGGGCCTGGCGTCCACGCTGGACAGAGTGGGTATCAGTATCAGCCCAGAGGAGGTGAAGAAAGCCCTGCAGAAGGCTGACTACGATGAGGACGGAGAGGTGGGGTTTCAAGATTTCCTGCATGTGATGGCGGACAGCCAGCGCTTCTCCAAGTGCTTGAAAGCTGAAGGAGCGGACCCATCCCAGTCTGTTGAGGTGTGTGAGACAGTGTTTTACAAGGCCCTGACCAGGATGCTGGCTGCTGGTATCCTGTCCAGTGGTACTACAACGGAGATCGTACAGTACTACCATAAAAAGACTCTGAGGCTGATCCGGCGGGCCGTGCGACCAGACAGGGAGGACGGGGACCATGTTCTCACCTACTACACCAAGGGAGCTCATCTCATAGGCCTGAAGAAGACAATTGCCCAGAGCCAGAAGGTGAAGGATAGCCCGTACTTGAGGTGTCCCAGCCTGAACGTGGCCTACACCTCCTGGGACCCCCGGCGCATGACCCTGAACCCTGCGCAGAGGGCCAAAATGGGCCGCGTGAAGTCTGTCAAGACCTGGAAGACCGCTGAGATCGAGGATCGCATCAGACAACTGTCAATCAAGCACCCCGGGATGGAGAAAATGGAGATGATCACGCCTGTGAAGATGAAGGTGAACATGTCCATGAAGGAGAGGGACCACCTCACTTACAATGAGATCTACCAGATAAAGCAGATGTCCAAATCAAGTCTGAAGGAGTACCTGAAGGACCTGACCCAGCTGAAGCGCAGGGACATGTGGAACTCCTGGGGCTCCCTTCAGTGTTACTGCGCCCTCCACAGCCGAAAGGACTTCCCCAAAACCTTCACCACCTACTCCTGGTCCTGGAGCGGCTGTCGCAACATGATGGAGACTGGAGACCTGGACGCTCCCTGTAGGTCCGCCCTACGCCCCCATGTAGCCAACCACTGGAGCCCTTCGCCAGGAAGCGGCGTGCCTCGTCCAATCAGGGAGGCTAAAAAGAGAAGACCCTGGCGGCAACCCCGTTGACAGGAAGAGCAGTACACTGTAGAAAAGAGGAATAACACCAATAGCAATCATAACAATACTGATACGATCAATTACTTTAACCACAAAGATCCCAGCCACTCCCACTTCCTCTGACCACAGTCTCCACTCCCCCACCCCTCCTGATCCCAGTCTTCGACCAGAGCGGCTGTAGTTATGAGTGCAACAACCCCCCATGTTATGTGTACAAACAGGACCGGCCCCCTAGCTGATCTGTTGCTCTGGGCCTAACTTACATTAGCCCGCCCCTGAGGCCccatgagaggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1336006 lncRNA downstream 2848 37605564 ~ 37606416 (-) True G1171488
TU1336037 lncRNA downstream 10815 37597955 ~ 37598449 (-) True G1171519
TU1336035 lncRNA downstream 30467 37578587 ~ 37578797 (-) True G1171517
TU1336032 lncRNA downstream 34252 37574773 ~ 37575012 (-) True G1171514
TU1336012 lncRNA downstream 62805 37546248 ~ 37546459 (-) True G1171494
TU1336044 lncRNA upstream 2370 37619629 ~ 37619962 (-) True G1171526
TU1336049 lncRNA upstream 8860 37626119 ~ 37626353 (-) True G1171531
TU1336069 lncRNA upstream 11116 37628375 ~ 37748497 (-) False G1171533
TU1336119 lncRNA upstream 111207 37728466 ~ 37735769 (-) True G1171581
TU1336053 lncRNA upstream 130278 37747537 ~ 37748196 (-) False G1171533
XM_021557724.2 mRNA downstream 4736 37588948 ~ 37604528 (-) True LOC110486267
XM_021557725.2 mRNA downstream 8905 37588948 ~ 37600359 (-) False LOC110486267
XM_021557723.2 mRNA downstream 106354 37486500 ~ 37502910 (-) True LOC110486265
XM_021557716.2 mRNA downstream 153785 37426664 ~ 37455479 (-) False LOC110486263
XM_036940968.1 mRNA upstream 11243 37628502 ~ 37631611 (-) True LOC110485166
XM_021557728.2 mRNA upstream 29838 37647097 ~ 37651150 (-) False LOC110486270
XM_021557729.2 mRNA upstream 29838 37647097 ~ 37651150 (-) True LOC110486270
XM_021557730.2 mRNA upstream 131346 37748605 ~ 37771147 (-) True LOC110486271
XM_021557736.2 mRNA upstream 252415 37869674 ~ 37873363 (-) False LOC110486276
TU1335834 other downstream 410624 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 724924 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 780839 36819594 ~ 36828425 (-) False G1171057
TU1337466 other upstream 1563515 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 1630893 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 1630893 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 1630893 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 1710957 39328216 ~ 39331239 (-) True LOC110486318

Expression Profile