RNA id: XM_036940978.1


Basic Information

Item Value
RNA id XM_036940978.1
length 5579
RNA type mRNA
GC content 0.61
exon number 21
gene id LOC110486281
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38077325 ~ 38133730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAACTATTTATAACAGCCtttataaatacacacacatacatattccATTCATAATCCATTACACAGGTGGTACATAGAGAGTGGGACTGTGTCATAGGTGTGCGTGTCTTTGTgtggttgcgtgtgtgtgtgcgcacacacagaTTAACCTTGGGCATGTTTCTTCTTTTAGCCAACGCTGGGGCCTGCTATCCAAAACAAGATCCCTCAGAGCGTGGTGGCGGTCACATGATCTCGACGGATGACCTTGAGTACCCGCGGGAGTACCGGACGCTGGGGAACGGGACGCGGCGTTTCTCCAACGTGGGTCTGGTGCACACCTCGGAGCACCGCCACACGGTCATCGCAGCCCAGAGCCTGGAGGCCCTTACCAACCTGCACAAGGTGGACATGGAGTGCAAGAGGGACGCCTTCATGGACCACCTGAAGAACAAGTACCCGCCCCAGCTGCAGCACCCCGGGCATCAGCACCACAACCCCCCCTCGCCCTCACCCTCCCACGGCAGCATGAGGCAGCCTGACAGAGAGCGAGCCGCTCGcgaacagcaaCAACCCAACTACTGGAGCTTTAAGAGTCGTAGCCCGCGTCACTCCCAGTCCACCCAGTCTGGGCTAGCTGAGCAGGCTGCTAAACTGTCCTTTGCCTCAGCTGAGTCTCTGGCTGAGACCATGTCTGAGGCTGACATCCCCCTGGGGTTCAGCCGAACCAACCGCTTCCGCCAGAGTCTGCCCCTGTCCCGCTCAGCCAGCCAGAACAAGCTGCGCTCCCCAGGCGTGCTGTTCCTGCAGTTTGGGGATGAGACTCGGCGGGTGCACATCACCCACGAGCTGAGCAGCCTGGACACGCTGCACGCCCTCATCGTGCACATGTTCCCCCAGAAGCTGACGGCGGGGATGCTCAAGTCCTCCAACACGGCCATCCTGATCAAGGACGAGGCGCGCAACGTCTTCTACGAGCTGGAGGACATCCGGGACATCCAGGACCGCAGCATCATCAAGATCTACCGCAAGGAGCCCATCTACGCCTCCTACCCCGCCACACACCTGGTCAACGGGGACCTGAGgAGGGATCTGGTGTACACATCCCGAGAGTCCTCCCCCACCCGCCGCCTCAACACCCTGCCATCCTCCTCCGCCTCGCCCCCCTCCGGCTCCCCAGCCCGCTCCCGTCTGTCCTACAGTGGGGGTCGGCCTCCCTCCTTCGCCGGGCCGGGCAGTCACCCCCAGCTCCAACAACACtcccagcaccagcagcacccCCAGCAGCACCAGCCCCAGCACTCCCACCACCCAGGAGCCGTCTCCCACCACGGGGGCCCCAACGCcggcctgtcctcctcccctaGCGCCATCCTGGAGCGCCGCGACGTCAAGCCCGACGAGGAGGTTTCTGGGAAGAACATGATGCTGGTGAAGGAGGGGCTGTACGCTGACCCCTACAGCCTGGTACACGAGGGCCGCCTCAGCATCGCCTCCACACAGTCGCTGGCCGCCATCGGAGACCCCTTTGGCTTCCCCGTGTCCGGTGGGCTGTACCGCCGCGGCTCTGTGCGCTCCCTCAGCACCTACTCTGCTGCCGCCCTGCAGGGGGAGCTGGAGGACGCCCTGTACAAGCCTGGAGGTCCCCTCTACTCCGACTCCTATTCCTCAGCCACACTGGGCATGGGCTTCCGCatgcccccctcctccccccagaaGATCCCTGATATGCAGCTGAGGGACAGGGGGGACTCGTACTCTAGCTCCCCCAGCCGAGCCTCCCCGGTCAGGCAGAACTTCCGCAAGGACTCAGCCTCCTCTTCCGTGTTTGTGGAGAGCCCCAAgtccaggcccagctccagctctGACCCTCTGGCCCTGCAGGCCGGGCCAGGAGGGGACGGGAGCAGGTTTGCGCCCGGATACAGCTCCCCACTCCATGGAGAGACTtctgagtccagGGACCGTGCGGACCGTCTGGACCGTATGGAGGCCATGGAGAAACAGATAGCCAGTCTGACAGGCCTGGTTCAGAGTGTACTGACCAAAGCACCCGACAGTGACAGCACATGCGGCCTACTGCGTCTCTGCATGATGGCGGGCTGCCCTCCGGACCAGGGCTCGGAGTTCTCACGGCCCTTCCCTTTCTCTTCCAGCGAGAAGACCGAATCCAACAGCGACGGCTCCGCCACTGGAACTCTGACGCCGTCGGCCCCGCTGGCTCTGATGCCCCCCCCTCCCTCCGGAGACAGCCAGGTCACCACCGTCACCCGGCTGCAGATGCAGCTTCACCTCCACGACCTGCAGCAGAACGCCACCGACCTGCGCAAACAACTCTCCCAGCTCCGCAAGATGCAGctCCAGAACCAGGACAGTGTGAAGACGTTGCTGAAAAGAACGGAGAAGGAGCTGAAAGTGCGTGTGAGTGACGCTCTGAGGAAGCAGGAGGACCCTCTGCAGCGACAGCGCCTCCTGGTGGAAGAGGAGAGACTCAAGTACCTCAACGAGGAAGAGTTTATCATCCAGCAGCTCCATGACCTGGAGAAGTCAGTGGAGGATATCCAGAAGGGTTCGTCTGTCAATCACAAACTGGTGACGGTTcaggagctggaggagaaggCCTCACTTCTGAGGAAACTAGGAGAGACACTCACAGAGCTCAAGAACCAGTTCCCCAGTCTGCAGAGTAAGATGCGGGTGGTGTTGAGGGTGGAGGTGGAAGCCGTCAAGTTCCTGAAGGAGGAGCCACACAGACTGGACGCCCTGCTGAAACGCTGCAAGAGCGTCACTGACACACTGACCACTATGCGCAGGCAAGTGAACGAGGGCGTGTGGAAGAAGCAGGAGGACTTCCCCAAGCACAGCAGTGAGGACTTCCGTAAGAGTTCTGACTTTGACATGCCCACCAGCCCCCCTCTCAACCTCAGTGACCTGAGGGGCGGCAGCAGCCTGTCTAACTGGAGCCCCCACTCCAGCCACAGTCACGGTCATGGACACAGCCACCCCTCCTCTGGCCCTCACAGGGACACTCATCCCCCTGTGCCTCACAAGGGCCGGGCCCTGGAAGAGCTGGCCAACCGCGCTGCCGCTGATAAGGCTGTGTCTGTGGAGGTTCGACTGGCAGCAGAGCGGGACTGGGAGGAGAAGCGGGCCAGTCTGACCCAGTACAGTGCTCAAGACATCAACCGTCTGCTGGAGGAGACCCAGGCTGAGCTGATGAAGGCCATCCCAGACCTGGACTTTGCCGCCAAGCAGATCAACAAGCCCTCCTCCAACACaccctcccagtctcagatcCCCCCGAGTGGGGGAGGGACCCCAGATCACCGCCCTACCAAGCCCCAGCACGCCACACACAAGCTCTCGGGGAAGGAACCTGGCTCCAGACGTGGTTCTGATGCAGAGCAGCTGACAGTGACTCGCTATCGTACAGAGAAGCCCTCGaagtctccccctcccccaccacctcgACGCAGCTTCCCATCATCCCCGGCTGGACTGTTCACCCGCAGCGGAGAGACCCTTATCCCCGGCAAGAGCATGAAGTCGGAGGCGGAGGAGGCAGAAGCACAGAAGCCCCATGTGAAGCTGCGACGGACAGTGTCTGAAAACCCACGTCCTGCGTCCACCCCTCCCACCATCGCCTCTGGAGACAAGCAGGAGGGCGAGGAGGACATGATCGCTGCTGAACTGGAGCTGTTTCAGAGAGCCCCCCTCAGGCTCAGCCACCCCCCTCCCCTGTCCCTGCCCAGTGCCCCACGCAGCAGGACCAGCGTGCCCCCCTCCAGCCTCGACCTATGGCCCCCAGCGGCCCCGTGCACCAAGCTGTCTAGAGCATCGTTGGACTGCTCTGGCCTACAGTGGAAGCAGGGCAGCTCAGAATGCATACTGGCATCACACTCACAGGCACAGAGCACGGCCCTTCCTGGTCCGTCCTTCTCTCCTGTCCCCCGGATCGTGCCGACAGAGTGCGTGTCAGTTTCACCCTCTCCCTCAGAAGGCTTTGTCAGAGACTTGACACAGGACCATCAGATGTCCCCAACAGTGGACCAGTCCCAGAGCCAGACTGCTCCTCCCCAGACAGCCCCCAAGATCCAGGAGGTCTCTAAGGGGAAAGATCCCGTCAGCCAGCCCCAGAGGAAGCTCTCTCGGCGGGGGGAGCTGAGAATCCTGGAATCCTttgagaaggaggaagagagggaggagagagaagagctgtccTTGGTGCTGACTGAGCTGGGGGTGATGGTGATTTCACCCTCGGAAGCTCAGAAGCTCAGCAGGACCTGGGGAGAGGCTCTACAGACACTCACCATCCCACCTCAGCCTTCAGAGGGAAGCACTGAAACCTGTCTGTGTGGGGCTCCACTTCTGGTATTCTTCAGGGAGATTGTGACGGTCAGAGAGGCCTACAGGAAGCTGCAGTTACTGCTGGACAGGGAGGAGGACACAGGGTCATCCAATGTGGTCCCCAAGCCGAGAGCAGGATCTTCTCACAGCAGCCTGAGCAGCCCCAGTACCCTGGGCTCCAGGATAACTCTCTCCCCTGAGCAGCAGGACTCTCTGAGAGAGGTtctgaggagaggggtggagacagggGCCAGGAACCTGACACTCCCTCACAGCACTGGAACAAAGAGCATTCTAGCCACCCTTCCGGAGCCCAGTCAGGACTCTGCAGAAGCAGCAGTGAAACCCAATGGGTCTGCAGGGTGTGAGGAGAGCCAGGCCAGGGAAGAACAGGGACCGAACCCCTGGAAGCAGGGAGAGGACATTAGGAGCAGCACCTACAGGAGGCTGGACAGCCTGGATGAAACCATCCGCGAGCTGGAGAACACCCTGCTGGAGCTCAGTGGCCACCCCACCACAGTGCACCTctccccccccacaccccccacTGACACTGCCTTGTCAGAGGCTCCAGACCCATCCCAGATGCCTGGCACCAGCACCCCAGAGACCAAGAAGCCCCCAGTCCCACCCAAGCCCAAACCCTCCTACACTCCTGCCACGATGACCAAGGGAGGCAACAGCTCTTCAGCTGTGGGTAAAGTCCACTCCTCGGCTGCCTCCAGACTGAAGCACCTGCAGCAGAGCGGCACAGAGAAGACCAAAACTGGCAAGAGGGAAGACTTCCTCAAGGGCCAGCAGCAGTGAGTGAGGGACCAGCCTGTGCCCCGTGCCTGTCCTCTCCAGACTCCTCCTCAGCACCAACCACCTGACTACAGAGCTGCATCTGACCCCCCATCCCCTGCTACTCCTAGTCCATGCCCTTAAGCTCCCCTCCCCTCTGTTGGCTTAACATGGGTATTAGCCGTCTCTGACTCCTGTACCCTCTCATGTCCTACATTGACCCCACAATGCACAAGATATCTACCACTCTCCccttggtgtgtttgtgtgtgtgttctgtatgtttgtgtgtgtgcatgtctgtgtgaatGGAAGGGTGCTGTCAGGGACCACTACCAACTAAGGACTATACTCTGTTTTCATTTCTCTTTTTCCCCCTGAAACCTTTACAATTTTCCCCAATTCTCCAtgttcctcctcctgttcctcctgttcctggTCTGTCCCTGGGTCTGACCCGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1336258 lncRNA downstream 31871 38043339 ~ 38045454 (-) True LOC110486285
TU1336271 lncRNA downstream 42450 38029095 ~ 38034875 (-) False G1171720
TU1336270 lncRNA downstream 42450 38032511 ~ 38034875 (-) True G1171720
TU1336213 lncRNA downstream 177391 37899618 ~ 37899934 (-) True G1171671
TU1336205 lncRNA downstream 207737 37868589 ~ 37869588 (-) True G1171663
TU1336327 lncRNA upstream 18042 38151772 ~ 38165790 (-) True G1171764
TU1336356 lncRNA upstream 53455 38187185 ~ 38187485 (-) True G1171788
TU1336359 lncRNA upstream 60890 38194620 ~ 38194838 (-) True G1171791
TU1336360 lncRNA upstream 61400 38195130 ~ 38195366 (-) True G1171792
TU1336362 lncRNA upstream 64165 38197895 ~ 38198098 (-) True G1171794
XM_021557750.2 mRNA downstream 25238 38044043 ~ 38052087 (-) False LOC110486285
XM_021557749.2 mRNA downstream 55011 38005936 ~ 38022314 (-) True LOC110486284
XM_036940972.1 mRNA downstream 138286 37904093 ~ 37939039 (-) True LOC110485169
XM_021557735.2 mRNA downstream 202471 37869675 ~ 37874854 (-) True LOC110486276
XM_021557736.2 mRNA downstream 203962 37869674 ~ 37873363 (-) False LOC110486276
XM_021557756.2 mRNA upstream 158482 38292212 ~ 38303843 (-) True LOC110486288
XM_036941003.1 mRNA upstream 194127 38327857 ~ 38352056 (-) False LOC110486290
XM_036941004.1 mRNA upstream 194127 38327857 ~ 38352056 (-) False LOC110486290
XM_036941005.1 mRNA upstream 194127 38327857 ~ 38352056 (-) False LOC110486290
XM_036940993.1 mRNA upstream 194127 38327857 ~ 38352057 (-) False LOC110486290
TU1335834 other downstream 878685 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 1192985 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 1248900 36819594 ~ 36828425 (-) False G1171057
TU1337466 other upstream 1047044 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 1114422 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 1114422 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 1114422 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 1194486 39328216 ~ 39331239 (-) True LOC110486318

Expression Profile