RNA id: XM_021557782.2


Basic Information

Item Value
RNA id XM_021557782.2
length 5384
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110486300
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38712701 ~ 38807558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGATATGATTGAAAAAATGAGCCCTGTCGCGGCATAATGGAAACTCCCGACTCCTGTTCGGAATACATAAAGGCAAGGAGTGAAAGAGATTTCGATCAGGGCTCTCTGGCTTGAATTAATCACTCACTGTTTAATGGATCTTTGAGGCTTGTGCTTGACGCAGTGAGGAGCTGCATTTCTTGTATTCCGAGACCAACAGGACCCTGGATTTTTCATCAGAAACCTGCTGCCTCCTTGAAAATGTCTTGGGGTTCATGGTGACATAGGGTTCCAGTTTTTGATCGGGAAAGGCTAGAGGGATTCTGCTCCGCTGTTGTAAGCAGAGGACCAGAAGAAGGATCCATGAGGACTGGACTGATGCTACTGGAGGATCCCAGAGATGCTTTTACTTATCGGAGACATTAACCCAGATAGCAGAGGGAGTTCCTCTGAGCCCATGAATGTGACACAGcaagaaagacagaggaagaaacAATAGGATGAGACCGATCAACGATGTTATCCCTGGGGAAATAAGCACAAGACAATCTGAGGTGGTGAAATACTGAATCTCAGCGAACCATCTCTAGAACTTCATTCCAGGCTAAAGTCATTGGATGGATGCTGGTCTAAATGCACATGCCCAACATCTTTTTGTAAATGGCTGGAACATTGGGACCGAATTATCCTTCCCTGGACACAAGGCCAATATATTGATTGTCCTCGCGGAGGAGAACACTTGAAAGTCCAGCTAGATTACAAAGAGTACAGTTCAGCATCTTTAGAAACCACAGTGGTGTTCCCGTCTTAGAGCTTTTGGGCCCTGCCCATGACATCAAGAGGAGCACCAATGGCCTGCGGTGGAGCTATGGTAATGAGTGCCTTTTTCTGGTCTGTGGCCATAGTATATTTGACCCATATAGGCAGAGTCAATGGGGACTGCTGGCTCATCGAAGGCGAGAAGGGTTTTGTGTGGCTGGCCATCTGCAGCCAAAACCAGCCTCCATACGAGGCAATCCCCACGCATATCAACAGCACCATTGTGGACCTTCGGCTCAATGAAAACAAGATCAAAAGTATCCATTTCTCTGCCCTTAGCCGCTTCGCCAACCTGACCTACCTAAACCTGACCAAGAATGAGATCAACTACATAGATGACGGGGCCTTTTCTGCCCAGTTCAACTTACAGGTCCTTCAGTTAGGCTTCAACAAACTCCGTAACCTTACTGAGGGCATCCTCAGGGGTTTGGGCAAGCTGCAGTACCTCTACCTCCAGGCCAATCTGATTGAGACTGTGACACCCAATGCCTTTTTGGAGTGCTATAGCCTGGAAAACATCGACCTCTCCATGAACCGTATCCAGCAACTAGATGGGACCACGTTTACCAGCCTGACTAAACTGACTACCTGTGAGCTTTACACCAACCCTTTCAACTGTTCCTGTGAACTACTTGGCTTTGTGAAGTGGCTCTCTGCATTCCCCAACAGGACAAATGAACGGATGGTCTGTGACTCCCCATCAGGTGTCTCTGGCTACAGTCTGCTCAGCCAGAACCCTAACAATCCGACTTTTCGGAATGCCCTCCATATGCTCTCCACTGTGTGTACAGACGACTATGTGACGCCGTACATACCTGTGCCTCCTGAGACCACCACACTCCCACCAGACTACACTCCCTGTGGGCTGGAGGACTGTCCCTCCGGAACTGAGCCAGATGAGAGTATGAGTATCAACCCAACGGTCATTAATGTGGATATAAAACCCAGTATGAAGCTCAAGCAAGTCTCTAAAACAAGCGCCACCATCACTGTTCAGATCCCCCATCCCTTCAAGAAGATGTACAGCCTGGTTCTCTACAATAACAGTTTTTTCACTGATATTCAAAACCTCAAAATTCAGAATGAGGACATTGAACTTAAAAACCTGAAACCCCATACTGAATACACGTACTGTGTCGCTTCTATAAAGAATAATCTTAGATTCAATCATACTTGTCTGGCAGTCTCCACAGGACCCTGGAATGGGAAAGAGAGATCACAAAACCATGCAACAGCTACCCACTACATTATGACCATCCTAGGTTGTCTCTTTAGTATGGTGATTGTCCTAGGGGTGGTCTACTATTGCTTGCGTAAAAAACGTCAGCAAGATGAAAAGCACAAAAAGGCAGGCAGCCTGAAGAAAAGTATAATTGAACTAAAATATGGACAAGAGCTTGAAGGGGGAACCATTTCCAGGATGTCACAGAAGCAAATGATGGGTGGGGAGAGTATGTCCCGCATGCCATACCTACCATCTGGTAGTGAAATGGAGCAGTACAAACTGCAGGAGATAAGAGATGACACGCCTAAAATGGCCAAGGGAAGTTACATAGAGGTGCGAGGAACCGGGGACCACCATGAACGCAGAGAGTGTGAGATGTCCATGCCTGGGATGTCCATTCCTGGGAACAGCCAAGGGTCAGTGGCCGAGATTTCAACCATTGCAAAAGAGGTGGATAAGGTCAATCAGATCATTAACAACTGCATCGATGCTCTCAAGTCAGAATCCACATCTTTTCAAGGGGTGAAATCAGGAGCTGTGTCCACCCAGGAGCCCCAGCTGGTCCTGATATCAGAGCAGCCGCAGAGCAAGTCTAGCTTCCTGTCCCCGGTGTATAAGGACAGCTACCACCACTCGTTACAGAGGCACCACACCTCGGATGTCCCGCCAAAGCGGCCCAGCACTGCCACTGGAGGTCCAATGCGGAGCCCAAGGCCTTACCGCTCAGAGTCCAAGTACATAGAGAAGACCTCGCCAACGGGTGAGACCATCCTCACTGTAACGCCAGCCGCTGCCATCCTTAGGGCAGAGGCGGAGAAGATCAGGCAGTACAATGAGCACCGGCACTCCTATCCCGACAGCCACCAGCTGCAGATCGAGGAGCTGGAAGGGCCCGGAAGCCACAAGCCCTCCATCCTGGAGCCCCTAACTCGGCCCCGTCCCAGAGACATGGCGTACTCTCCGCTCTCACCTCAGTACCATAACCTCAGCTACTCCTCcagtcctgagtactactgcaaACCACATCACACTATCTGGGAGCGCTTCAAACTCCGCGGCAAACGGCACAAGGACGAGGACGAGTACATGGCTGCAGGGCATGCGCTACGTAAAAAAGTGCAGTTTGCCAAGGATGAGGACCTGCATGACATTTTAGACTACTGGAAAGGTGTATCTGCTCAACAGAAATCTTAATCTCTCCAAGTATTTTCTACTGGACCACAACTTTCAGAAATGACACAGAAACCTTATATGTGAAACTCACTATTGATTGGATGGATACTTCCATATTGCGATCAACTACTTAAACGTATATATAGCAACATATTTTGACTGTGAGTAAAATAGGAAAATAACCTTGGGAATGACCTTCTTGGAAATGACCATCTTAAATTTGTCACATTATGTATGGAATTTATGGGAATAAACTGTAATCTAACGTTTCAAGAagaaaacatattgcaaattaaGAATATACATATTATATGTTGCAATGGATTATAGGTATTTGGGTATCGCATGGCCAAGTCCTGTGACAGTGGATTTGCTGTTGTGTACTTTGAGAAAATACTGTAACAAATATTGAAAAACATGTCTACTGAAACCTCAATATTTTTCTTCAAGAACTACTGAACAATCATACGAAAAAGAACATTTTTTTCTCCCCACATATATTTAATTCTACAATGGAACTATGTACTGATACAGTTTCTATATCTGCAATGTTTGCTGTTAataagattttaaaaaatgatgttTGATTCAGGTTTAGCCCATGGATTTCAAAGACAGCTCATtatttgttttctaatgatttCCGTGTCCTAACTGATAAACATTACACTGGTCAGATAATTGGTATTATCTTACCCAGACCACTTAACTTTCCCTTCCCCTATTTGCAGCACTTTCACATAATACATTTTAGAGGCCACTAAACAAACTGCACAATATTAAAAGGCTGGAGTTTTCTAAATGTAATATTCCACATAAGACAGTTCATTGTATTATTCTGATGTTGATGGTCTGTCTTAGACATCGGCATCGTAAGCCATTAGTCATTAATCTTTAGAACCAAAGTAGAAAAAGCTGAAGTGTTTACAACATTTTCTTTCTGCATGGTCTAAGaaagtgtttcccaactccggtcctcaagtacccccaacagcacacatttgaGTTGTAGCCCAAGCACAAAAAcccctgattcaacttgtcaagggcttgatgattagttgataagTAGAATCAGGCGTGGTTGTCTGGGGCTACAGCAAAAAGATGTACAGTTgggggttgggaaacactggtctaaGATATGTGTGAACATAGTAAATCAGGTTCCATATGCATTTCATTTGAATTTGTTCTACTGTGTTTCAAAGAGCCAAAACATTTTAAGAGTTACTTTTGTTGAAAGTGTAATTGACCGTTAACCTTTATATTACCAATATTTTCCACAGAAGGCAACTTTagtttcccacctgttgtttagGCAGAATGCTGCGAATGCAGTTCACATTCTCTACTGGAATATCTGTCCTATAGCCCGATGGATGAATGTACAATATAGATGATGACGTCTGTATGTGGCAGCTTTTTCATTTGATTTCGgagcaattttttttatttgctaTTTACAACCATAATCTTGAGTTTCCTTTGTCTCTACTTGGTTTTTCAATTCATATATTTCCCATAACttatcatattttatatttgtctCAGCCAACAAAGTAAAAAAACAGCAAAGTTGTTGGTTTCACTGAAAGCTCTTGTTGAAGGATATTTTCCTATACTGTGCGGCTGTTATGACACTTTTGTAAATTAGAAGTCACCTATCAGAGGTATATCCACATGCCTAGGTTAACTATGAAATAATATCCCATGAATGCCTGAACTAAACTTCTGCCGCTGGATTTGTACATTATCTATACACTATTTTTGAGTGGATACAAGAGGTAACTTGGCTGTCTGAGTTCTTGTTTCAACCGCCTTAAATTTCTGGGATATGTGTGCGACTGTAATattctttatttttctttcaGTGTTGATATTGTTGACAAGTCCTTATTTGATGTAATTTTTCTAAATGCATTTCAATAGATTCCAAGAGCTGTCAGATTTATAGATGAATTAGCAAGTAAGCTACATGTTTTTATATTGCATATTGTAGCACTTCTGTGGCTCATAAAAGTTAGAATTGTTGGGAAACCGGTGGAAAAAACAGCGAAAAGCTGTTGTTTAAGTACACCAGAAACAAACAAGAGCACAATAaagtgtttttatttcatttcttAATACTATGTTACCTGCTTTCAGACAAAGTACTGTGAAATAAAGGGAAGGGTGCACCCATCA

Function

GO: NA

KEGG:

id description
K17567 ELFN1; protein phosphatase 1 regulatory subunit 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1336642 lncRNA downstream 21697 38664357 ~ 38691004 (-) True G1172062
TU1336624 lncRNA downstream 84284 38627663 ~ 38628417 (-) True G1172045
TU1336621 lncRNA downstream 86551 38625913 ~ 38626150 (-) True G1172042
TU1336618 lncRNA downstream 89099 38623326 ~ 38623602 (-) True G1172039
TU1336614 lncRNA downstream 94697 38611053 ~ 38618004 (-) True G1172035
TU1336829 lncRNA upstream 2821 38810379 ~ 38810761 (-) True G1172240
TU1336971 lncRNA upstream 10443 38818001 ~ 38818645 (-) True G1172361
TU1336983 lncRNA upstream 28277 38835835 ~ 38836146 (-) True G1172372
TU1337046 lncRNA upstream 176846 38984404 ~ 38990726 (-) False G1172431
TU1337045 lncRNA upstream 181554 38989112 ~ 38990726 (-) True G1172431
LOC110486299 mRNA downstream 133393 38577130 ~ 38579308 (-) True LOC110486299
XM_021557780.2 mRNA downstream 160895 38497751 ~ 38551806 (-) True LOC110486297
XM_021557779.2 mRNA downstream 160898 38490118 ~ 38551803 (-) False LOC110486297
LOC110486295 mRNA downstream 292440 38411240 ~ 38420261 (-) True LOC110486295
XM_036941010.1 mRNA downstream 313378 38390883 ~ 38399323 (-) True LOC110486294
XM_021557789.2 mRNA upstream 107569 38915127 ~ 38919761 (-) False LOC110486304
XM_021557790.2 mRNA upstream 107569 38915127 ~ 38928959 (-) True LOC110486304
XM_021557797.2 mRNA upstream 257606 39065164 ~ 39071223 (-) False LOC110486307
XM_036941019.1 mRNA upstream 329362 39136920 ~ 39165268 (-) False LOC110486310
XM_036941020.1 mRNA upstream 329362 39136920 ~ 39165268 (-) False LOC110486310
TU1335834 other downstream 1514061 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 1828361 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 1884276 36819594 ~ 36828425 (-) False G1171057
TU1337466 other upstream 373216 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 440594 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 440594 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 440594 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 520658 39328216 ~ 39331239 (-) True LOC110486318

Expression Profile