RNA id: TCONS_00004074


Basic Information

Item Value
RNA id TCONS_00004074
length 765
lncRNA type retained_intron
GC content 0.32
exon number 2
gene id XLOC_002089
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21867307 ~ 21870457 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATTTTCCTTGTCTCTCTGATTGTAAGGATGAAGGTGAGTGTTTCTCTTCTTCTGTTTTGCTATCTGTCTCTCAGTGATGGAGATAAGGAGCTGGAAGTTTTGGTGGCCAGTGAAAGAAATGACCAGCCCAACATCTGGACTGAGGTGAGAGATGTAAGAGACATGTTGGTGGAGCTCAGAGTCAAGCTGGACATGACGATGAAAGAGAATGCAAAAATGGCAGATCAAATACTGGAGCTGAAGAAAGAAAATTCAGGTATTTACAATTGTATTTTGATACCTGCTGTGGTGTACTGTTCAAAGttgaccagaaaaaaaaatccacataatTCACTGTATGCTTCTCTTAATAATAGCAAATATTccatagaataataataatgtaaaggtaatatttcaaggaaaaaaaaattcatttagaTAATTTCTTTCTAGAAAATCACAACAGACGATTCAAAACCATGccaaaaaatgtacaaatgacaacattttaattttacatatataatCAATGCCTATGAATAACTTTAATCAAACTATAAACCCTAAATCCGGagaaaatgatcatttttaagAAATCTCATTTGTTATTGGGCTGTACACACacgaataaaaaatattaagtcaGATTAAAtactgtagttgttttaaacaatACAATAGTTAAATgtattatagaccattttgagaaatgtaaacaaatacaatggtcccaatgtatttcctattttacatttgtaatgtCTATAGCTTCCgggaatc

Function

GO:

id name namespace
GO:0015698 inorganic anion transport biological_process
GO:0008395 steroid hydroxylase activity molecular_function
GO:0032052 bile acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111109-4 No description available

Ensembl:

ensembl_id ENSDART00000158807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005705 lncRNA upstream 121802 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004043 lncRNA upstream 192849 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004041 lncRNA upstream 193007 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004040 lncRNA upstream 194968 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00005879 lncRNA upstream 323745 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00005706 lncRNA downstream 37926 21906152 ~ 21906377 (+) True XLOC_002091
TCONS_00005880 lncRNA downstream 46409 21914635 ~ 21944085 (+) True XLOC_002092
TCONS_00005881 lncRNA downstream 49651 21917877 ~ 21945344 (+) True XLOC_002093
TCONS_00005882 lncRNA downstream 68052 21936278 ~ 21949408 (+) True XLOC_002094
TCONS_00004082 lncRNA downstream 166375 22034601 ~ 22041604 (+) False XLOC_002097
TCONS_00004053 mRNA upstream 47174 21730585 ~ 21820133 (+) False XLOC_002083
TCONS_00004056 mRNA upstream 47174 21758811 ~ 21820133 (+) False XLOC_002083
TCONS_00004058 mRNA upstream 47174 21777022 ~ 21820133 (+) False XLOC_002083
TCONS_00004059 mRNA upstream 47174 21780250 ~ 21820133 (+) False XLOC_002083
TCONS_00004065 mRNA upstream 47174 21789978 ~ 21820133 (+) False XLOC_002083
TCONS_00004077 mRNA downstream 31527 21899753 ~ 21909696 (+) True XLOC_002090
TCONS_00004079 mRNA downstream 135524 22003750 ~ 22031921 (+) False XLOC_002096
TCONS_00004080 mRNA downstream 144163 22012389 ~ 22031866 (+) True XLOC_002096
TCONS_00004081 mRNA downstream 166251 22034477 ~ 22045119 (+) False XLOC_002097
TCONS_00004083 mRNA downstream 166375 22034601 ~ 22044632 (+) False XLOC_002097
TCONS_00004047 other upstream 47250 21701551 ~ 21820057 (+) False XLOC_002083
TCONS_00004049 other upstream 47250 21708463 ~ 21820057 (+) False XLOC_002083
TCONS_00004046 other upstream 48702 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004062 other upstream 48702 21786656 ~ 21818605 (+) False XLOC_002083
TCONS_00004071 other upstream 54729 21804772 ~ 21812578 (+) False XLOC_002083
TCONS_00004078 other downstream 112321 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004086 other downstream 166935 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004103 other downstream 979046 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004107 other downstream 1022957 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004117 other downstream 1549607 23417833 ~ 23417947 (+) True XLOC_002122

Expression Profile

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