RNA id: XM_021557789.2


Basic Information

Item Value
RNA id XM_021557789.2
length 3569
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110486304
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38915127 ~ 38928959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGTATCTTGTTCGAGAAAGTGCAGCTCAAAGCGCTGGATGGAATATTTGGCCTAAATTGTTTAGCTGGCAGAATTTTGCGTCAGCAGCACAGTGAGCTAAATATACCCAGCAGTGTTAAATAAGGGCATGTAGCAGCTCAGGAAAGCCCAGTGTAATACGAGCCAGACGAGCAGACACAAGTCCGAAACCAAATAGAGTACATTGTCTCACTACAAAAATACACCCATGACTGGAAGGGAAACTATTCCTCTGTGACATGCGATCTTCCGGAATTTCCCACATATCTACAGGACTGTAAAGTTCAGTATGACCATAAATTGTGACGTCTGTGGGATTCTGGCCAGTTTATGCATGCAGGGTATGACGACTCAGTTTAAAGGAAACAAGACTTTAAAGGTTAAGAAGGAGGTGGGTGAGAATGCTCCGGCCCTCTGTGATGACGAGCTGGTGGCCATGTCGGTGCGTGAGCTCAACACACACCTGCGTGGGCTGACCAAGGAGGATGTGGTGCGGCTGAAGCAGCGGCGGAGGACCCTGAAGAACCGGGGCTACGCCGCCAGCTGCCGCATCAAGCGGGTCACCCAGAAGGAGGAGCTGGAGAGGCAGAAGCAGGATCTGCAACAGGAGGTAGACAAGCTGGCCCGGGAGAACGCCAGCATGAGGCTGGAGCTGGACGCCCTGCGCGCCAAGTATGAGGCCCTGCAGTGCTTTGCCCGGACTGTCACCTGCGGGCCTCTCTCACCAGGCAAGGTGGCCACCACCAgtgtcatcaccatcatcaagtCTACAAACAACCACAACTCCAGCCCAACCTCCTTCTCAGCTCCCTCCTAGTTGTGACAGAACTGAGCTCTCGTCTCCCCGTCCTTACCTGTTTCGACCCGATCCAGCCTGAAACCAATTGCACCTGACCCAtgctgagaggaagctcagtaaTTAGACTGAGGGAAGGGGGTGGGGTGGCCACTAGCTCTGTGTGATGataacaacatgatgctgcattcattctctactctctttctctcacatatTGTACACAATCTACATTGTCTGTGCACTGTGCTACAACCGCCCCAGCACCGGCCGGGCATTGggcctctctgaccctctctccttGACTGATGGCAGAGATTAGCTCATACTACAGTGTGAGTGGATACTTGATATTATACCCCGCGATGGCAGCACTGGTCTGAGACAGCTCTGATGCCTGTGGTATCTTGCATTTACAGAGTATAAAGTAATATATATTATTGTAATAATTACCGTattaatacattataaacatttaaaataacaaacaaacaaatgctGATCTAAGCCTAAAAGCCTTCTTTCTTCTGTATATGAAAGCATATACTAATGTCACAATGAAAATTGAGGCATTGAAGCTTTTGCCTTAAACTGATCTCGGAATGATCTCTCAGTaatattcattttttttgtcactcTCATAAAGTATGTTCAATATTTTAAGCTTTAATATTTCCAATTTCAAGGGCAGCTTGAAAACTGACCAAGCATGTTTAGCTGGATGAACCAGGCCCTTTTGACATTGGAAAACTTTATCTGGTTTAGACTGTAGATTAGACTTGCAGGTATATAGCATTATAGCATAGCCTACATAAAAGAATACAAACATACTCATGGGTTATCCTCCTTACAGCTGTGAGGAACTAAATCTACAGTACAAGTCAAATACAAATTAGGCTACATCCGACAAATGACAGATCATTGAACGGCACTTACTATTAAACTGTTAGATCGCGGTGTAAAAGTACCAACCTCACTTGGTTTGCAAATGTTAAATCATATAGCTGCAAATTTACACCTAAAATCATAGGACACCTGAAGCATCTTTTTGGGAAATACCGCAGTCCATTCGTGTATTACTTTAGCAATGGGAGATTGTATGATGCTGATCATAGTTTGTGGTCTATCCCAGAATTGCTAAAGTTGCAGCTAGTTTATAACTATTGCCAAGGGTGGCATATTTATTTTATGATAATAAGACAAGCACTTACCTACGATCTTTTGCCTCTGAACTTTCCTCCCCATGCTATGCCATATTTCATGGTAGGTAATCCATATTGGATGTAGTGATAATGGGAGCTGCCTTGACAAAATGAAATGCAATTCAATGAATTCCTGTATATTACAGACTTAAGCTAGACCCTCTATTTTAGTTTCAATGCAAGATAAGGAAAATGGAAGATCAACTGCCTCCTGTCACTTTACATTGAGAACTCTGCCCTCTTAGAAATCATTCCTACTGTTGGATTGTCTGAAAGTGCTGCTGCCGGTGTTGGTAACTCTCTGAAACAGTAGACATTGAACACAAGTGCTTTCGACACAGACTCTTGGGTAAGAGGAATCCCGGCATAAAACTCaagagaaaaaaaactctagGAATGGTGTCACGACCAAATCCAAGTGTTACCCATAAACAAGCACAGGTTAAGTATGCTTTTTGAAGGGTCTAAGTTTCAGTTCTAGATAATTATCTAGAATCTATAGTTTTTGCATTTCAGCCCTTATCGAAGTTAGTCACGAGTGAAGTCTAGAGTTGGCTCTTGTCAAGGTTTTCTCTTACCCTAGTGTACATGATTTTTCCTCTTCCCCTGTTTCTTAGCTGTAAAGATCACGAAGGGGGACTTTGCTGCTGCATGGCCCTCTGCTATTTCAGGCAGGGCCATTGCTGTGCTCTTATCATTCTCATCTTGTGTTTTCATTTGGTATATTTGTTATTACACTTTAATTCCCATGTcttttatatatgtgtgtgtatttttctATAATTGTTGCTTTATTATAGGTATATTAAATACCTGGGAGTGGTGTGATCTTGTAATCGTCCCCTGACGTAAAATTATTCTTATTTTCTGGCCTATCTCAGCAGGATAGTTCAATTATTATCTATAGCATCGATTAAATCATAAGGAATCTATTCTGCTGACTTTATAGTTGTATTTGTGTCTTCTTAATGTCAGTTCATAAATATTACCTGCAAACTACCCTCGGCTAGTCTGCAAATTAGGCTGTCTGTGTTTACAGTCATGCCTGTTTTAGAGTAGGTGGATTGGGTATATTTTGATAGGAAAGACTTACTTTGGTAGCTAATTGCCATATGCCCACATGCTATTATAAGGAAGATACGTTTGTATCACATTGCTAAACTCCAAGACTTTCGAAGTTTGAGTTGATGCTTTTGTGACAGCTATGAAACAGATACAAGTATTACAATTTGGAGGAGAATATACAGCAGAATGCAAGTTATGAAATTACAGGTGAGGTGAAAACACTTGAATTATTTAGCACCCTTTTCTGAGCTTTACAGTGACCTCTGCTGGTACATGCTGTGAATAAGCACATTATTATTGATCAAATTGTTTTGGAGACTTTTGCAGTCCACTTGCATATCAATTTATAAAACTTTTATGCGTTAGTTATTGCTTTCAATTTCATTCAATTCTGTTCTAAACAAAGCCACAATACTGTCTGACTCAAATTTGAGTGCAAACATATACTTTTGTGTCAAAATAAACATCTAACGAAGTAGATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1336983 lncRNA downstream 78981 38835835 ~ 38836146 (-) True G1172372
TU1336971 lncRNA downstream 96482 38818001 ~ 38818645 (-) True G1172361
TU1336829 lncRNA downstream 104366 38810379 ~ 38810761 (-) True G1172240
TU1336819 lncRNA downstream 117581 38797318 ~ 38797546 (-) True G1172230
TU1336761 lncRNA downstream 185770 38729015 ~ 38729357 (-) True G1172177
TU1337046 lncRNA upstream 64643 38984404 ~ 38990726 (-) False G1172431
TU1337045 lncRNA upstream 69351 38989112 ~ 38990726 (-) True G1172431
TU1337109 lncRNA upstream 88626 39008387 ~ 39008764 (-) True G1172485
TU1337182 lncRNA upstream 142443 39062204 ~ 39062470 (-) True G1172557
TU1337185 lncRNA upstream 146216 39065977 ~ 39066239 (-) True LOC110486307
XM_021557782.2 mRNA downstream 107569 38712701 ~ 38807558 (-) True LOC110486300
LOC110486299 mRNA downstream 335819 38577130 ~ 38579308 (-) True LOC110486299
XM_021557780.2 mRNA downstream 363321 38497751 ~ 38551806 (-) True LOC110486297
XM_021557779.2 mRNA downstream 363324 38490118 ~ 38551803 (-) False LOC110486297
LOC110486295 mRNA downstream 494866 38411240 ~ 38420261 (-) True LOC110486295
XM_021557797.2 mRNA upstream 145403 39065164 ~ 39071223 (-) False LOC110486307
XM_036941019.1 mRNA upstream 217159 39136920 ~ 39165268 (-) False LOC110486310
XM_036941020.1 mRNA upstream 217159 39136920 ~ 39165268 (-) False LOC110486310
XM_036941021.1 mRNA upstream 217159 39136920 ~ 39165268 (-) False LOC110486310
XM_036941025.1 mRNA upstream 217159 39136920 ~ 39165268 (-) False LOC110486310
TU1335834 other downstream 1716487 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 2030787 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 2086702 36819594 ~ 36828425 (-) False G1171057
TU1337466 other upstream 261013 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 328391 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 328391 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 328391 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 408455 39328216 ~ 39331239 (-) True LOC110486318

Expression Profile