RNA id: TU1337467


Basic Information

Item Value
RNA id TU1337467
length 249
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110486310
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 39136920 ~ 39183852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttgtTCCTCTGTTTCAGAACCGAATGGATAAAAAATACATCCTGGAATGGCAAGATTCCCCATGGGCAGGCACCTTCATTTTGCTAGTATTGAGAGAGATGTTGTCTTTACTGGCACCTGATTTATCCAATGAGATTGCAATGGGAGCCTCAGCAAATGGGTGTCAAATTGGAGGAGAGAAATCCGTTAAACAATGGAGTAACGTTTTACTGAAGGTAAGGCATGTTGCTTTACATAATTAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1337303 lncRNA downstream 40736 39130975 ~ 39131215 (-) True G1172658
TU1337296 lncRNA downstream 45124 39126520 ~ 39126827 (-) True G1172651
TU1337283 lncRNA downstream 54263 39117296 ~ 39117688 (-) True G1172638
TU1337258 lncRNA downstream 79276 39091841 ~ 39092675 (-) True G1172614
TU1337260 lncRNA downstream 83159 39086412 ~ 39088792 (-) True G1172615
TU1337489 lncRNA upstream 2109 39174308 ~ 39174523 (-) True G1172811
TU1337492 lncRNA upstream 10510 39182709 ~ 39183852 (-) True LOC110486310
TU1337494 lncRNA upstream 13597 39185796 ~ 39186096 (-) True G1172816
TU1337507 lncRNA upstream 106322 39278521 ~ 39279864 (-) True G1172823
TU1337598 lncRNA upstream 193663 39365862 ~ 39366086 (-) True G1172905
XM_036941026.1 mRNA downstream 6682 39136920 ~ 39165269 (-) False LOC110486310
XM_036941019.1 mRNA downstream 6683 39136920 ~ 39165268 (-) False LOC110486310
XM_036941020.1 mRNA downstream 6683 39136920 ~ 39165268 (-) False LOC110486310
XM_036941021.1 mRNA downstream 6683 39136920 ~ 39165268 (-) False LOC110486310
XM_036941025.1 mRNA downstream 6683 39136920 ~ 39165268 (-) False LOC110486310
XM_021557808.2 mRNA upstream 47880 39220079 ~ 39223322 (-) True LOC110486311
XM_021557815.2 mRNA upstream 75951 39248150 ~ 39250295 (-) False LOC110486313
XR_002468056.2 mRNA upstream 81831 39254030 ~ 39254795 (-) True LOC110486314
XM_021557820.2 mRNA upstream 83620 39255819 ~ 39275546 (-) False LOC110486315
XM_021557819.2 mRNA upstream 83620 39255819 ~ 39275562 (-) False LOC110486315
TU1335834 other downstream 1973311 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 2287611 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 2343526 36819594 ~ 36828425 (-) False G1171057
TU1337466 other upstream 8575 39180774 ~ 39181194 (-) False LOC110486310
TU1337500 other upstream 75953 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 75953 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 75953 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 156017 39328216 ~ 39331239 (-) True LOC110486318

Expression Profile