RNA id: TU1337466



Basic Information


Item Value
RNA id TU1337466
length 421
RNA type TUCP
GC content 0.51
exon number 1
gene id LOC110486310
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 39136920 ~ 39183852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGTCAGTGAATGTGGGGCGAGGTTAAGGAGAGCGGCCAATGCTGCTTGTTTTGAGCTGCCCCCCTACCAGGCGGCACATGAGCCTGTCGATATGGCAGTTTGATGTCAGTCAGAAAAGAAGAACCCCCACAACAATCGCAGAGGGGGCCGGGACGGAGAGACAAGAACAGAgtaagagaggggagaaaggaaaGAACCATCGACAGATGAACTCAGTTGTGATTAAAGATGGCGGCTCTGCATACCGCAGACTGCGCAGCGCGGGACGTGATCCACAGCAAGACAATCGGAGCCGTCTGCATTTCAGCAGAACAAAAACAAGCATCGCGTAACAAGGTAAATTCAAATGCTGTCTGCACAGCGTTGAACCTTTGAGAGCGACGGCTGCTTTTGCATTGTTTATCGATCCATTTCTTTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1337489 lncRNA downstream 6251 39174308 ~ 39174523 (-) True G1172811
TU1337467 lncRNA downstream 8575 39171951 ~ 39172199 (-) False LOC110486310
TU1337303 lncRNA downstream 49559 39130975 ~ 39131215 (-) True G1172658
TU1337296 lncRNA downstream 53947 39126520 ~ 39126827 (-) True G1172651
TU1337283 lncRNA downstream 63086 39117296 ~ 39117688 (-) True G1172638
TU1337492 lncRNA upstream 1515 39182709 ~ 39183852 (-) True LOC110486310
TU1337494 lncRNA upstream 4602 39185796 ~ 39186096 (-) True G1172816
TU1337507 lncRNA upstream 97327 39278521 ~ 39279864 (-) True G1172823
TU1337598 lncRNA upstream 184668 39365862 ~ 39366086 (-) True G1172905
TU1337603 lncRNA upstream 188064 39369258 ~ 39369479 (-) True G1172910
XM_036941026.1 mRNA downstream 15505 39136920 ~ 39165269 (-) False LOC110486310
XM_036941019.1 mRNA downstream 15506 39136920 ~ 39165268 (-) False LOC110486310
XM_036941020.1 mRNA downstream 15506 39136920 ~ 39165268 (-) False LOC110486310
XM_036941021.1 mRNA downstream 15506 39136920 ~ 39165268 (-) False LOC110486310
XM_036941025.1 mRNA downstream 15506 39136920 ~ 39165268 (-) False LOC110486310
XM_021557808.2 mRNA upstream 38885 39220079 ~ 39223322 (-) True LOC110486311
XM_021557815.2 mRNA upstream 66956 39248150 ~ 39250295 (-) False LOC110486313
XR_002468056.2 mRNA upstream 72836 39254030 ~ 39254795 (-) True LOC110486314
XM_021557820.2 mRNA upstream 74625 39255819 ~ 39275546 (-) False LOC110486315
XM_021557819.2 mRNA upstream 74625 39255819 ~ 39275562 (-) False LOC110486315
TU1335834 other downstream 1982134 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 2296434 36884018 ~ 36884340 (-) True G1171149
TU1335481 other downstream 2352349 36819594 ~ 36828425 (-) False G1171057
TU1335522 other downstream 2352349 36819594 ~ 36828425 (-) False G1171057
TU1335460 other downstream 2352349 36826456 ~ 36828425 (-) True G1171057
TU1337500 other upstream 66958 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 66958 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 66958 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 147022 39328216 ~ 39331239 (-) True LOC110486318
TU1338408 other upstream 742728 39923922 ~ 39924959 (-) True G1173645

Expression Profile