RNA id: TU1337502


Basic Information

Item Value
RNA id TU1337502
length 1714
RNA type TUCP
GC content 0.40
exon number 2
gene id LOC110486313
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 39248150 ~ 39250310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTGATATGAGACCGAGAAGGTAACACATTAGCAAATCTATGAGCTCCTATAACTATTTAACCGTTCAAAATTATGTCCATAGACAAACATgaagtgatatatatatatattttaaatgtacaTGTTGTCAGTGAAGATAATCTAGCTACTACTGTTGCTTTAAAATAGAGATTGACAGCACAAATAACATTTGTTTCGATATATTCTGCATCACATGGTCTCATTTCCTGCACTGATACAGGGGCCTTGAAGTTCGGTTTTTGCGTGGGTGGCTACTAGTGTATTTAATGCACTGCATGAGCAAATTTTACGAATGAAATCGGTTCAATTAGGAGCCATGGATCTTATGTATTGATACAGGCAGGGCTGTTGCTGCATAGCACATTGATGAAGATACGCGATCGCGTCGTCTGTTTCAATGGAATGGTCTCCCAAGCAGAACCGTAAGACACCAAAATCAGCAAGGGATCATACCACGCAGTCCTTGTCAAGTCCCCTGTTCTATGACAATGCTCTGAGTCACCTTCCTGTTGCAACATGTACATCACAGACCACAGCCCCACTACTGGGGTGGTGACAATCATAGTGATCCTCATTGCTGTTGCTGCCCTCGGTGTTCTCATCTGCGGATGTTGGTGCTACCTGCTCCTGCAGCGGATTGGCCAGTCTGAAGATGAGGAGAGTATTGTAGGAGAGGGCGAGACCAAGGAGCCCTTCCTGATGGTACCGTACTCCACCAGGGGCCCCCACGTCGAGCACAAAACCAAGCTCACCCACAACGGCACTGAGAATCACACTTAACTGAGTCATTAAGAAACCGTGGTCATCACCTAATATTAACCAAGAGGATCTCCTCATTCACATTTCATCATCTTTCATCACGCCATTGAAGGATGATAAACGGACTGCAGCTCAATGTCAATGTCTtaggaaatgtgatatttttgtttCTCATTCCATTGTGTGGATCTCAGTCAGGATGTGAGGTTGTGAATAGTTCATTGTTATGTTTCTTAAGTGTACATATTTTGAACACAAAAATGTACATCTAATTGATATTGATAGTTTTTGTTAACTCAGCAATCCACTACTGAATTTTGACGATAGACATGAGACAGCGCTCTGACGAAATGAGTGGGCCAAACCTTCTTCAGAGCTTGTTGGAAGAATGTATGGTAAATTGATGACAAAACAATTTACTTAATATCAAGTTGCTCAAATTATTTGAAATTAATTGACATGGGCTACTTGAGTGACAGTCAGTGAGTGACATATAAGAAGAgggaaactgctgatgcacaaccaagttcgaaattgcaccttgtgtattctactattccaactctcaacagtaagttgaccccaactgttcctaaaaaaaattatagattattatatatttttataatgTTGGCAAGGTCCGTACCTCGGTGTCCTCATATGTAGCTACAATACAGTAGCTGCTACAACTGACATGGGTTGAGAAGTCCTACCAAGAAGCTACCAAGAGCCAATTACATATTTTCTATATTCAGTTGCAACATAGGAAATCCTGATGGAAAGATTCTATGGTACCTGAGCAGGTTGATATTTGATGAAACAATGTTATAAAGTATTATGAAATGTAAATAACATTATGAAGACTATTGTTCTCTTTGTCATTTGATGTACCATTGTATCATTTCCAAATAAACTTTAAATGTTATATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1337494 lncRNA downstream 62056 39185796 ~ 39186096 (-) True G1172816
TU1337492 lncRNA downstream 64300 39182709 ~ 39183852 (-) True LOC110486310
TU1337489 lncRNA downstream 73629 39174308 ~ 39174523 (-) True G1172811
TU1337467 lncRNA downstream 75953 39171951 ~ 39172199 (-) False LOC110486310
TU1337303 lncRNA downstream 116937 39130975 ~ 39131215 (-) True G1172658
TU1337507 lncRNA upstream 28211 39278521 ~ 39279864 (-) True G1172823
TU1337598 lncRNA upstream 115552 39365862 ~ 39366086 (-) True G1172905
TU1337603 lncRNA upstream 118948 39369258 ~ 39369479 (-) True G1172910
TU1337606 lncRNA upstream 120077 39370387 ~ 39370652 (-) True G1172913
TU1337618 lncRNA upstream 123834 39374144 ~ 39375370 (-) True G1172924
XM_021557808.2 mRNA downstream 24830 39220079 ~ 39223322 (-) True LOC110486311
XM_036941022.1 mRNA downstream 65157 39136920 ~ 39182995 (-) False LOC110486310
XM_036941023.1 mRNA downstream 66234 39136920 ~ 39181918 (-) False LOC110486310
XM_036941024.1 mRNA downstream 66271 39136920 ~ 39181881 (-) False LOC110486310
XM_036941026.1 mRNA downstream 82883 39136920 ~ 39165269 (-) False LOC110486310
XR_002468056.2 mRNA upstream 3720 39254030 ~ 39254795 (-) True LOC110486314
XM_021557820.2 mRNA upstream 5509 39255819 ~ 39275546 (-) False LOC110486315
XM_021557819.2 mRNA upstream 5509 39255819 ~ 39275562 (-) False LOC110486315
XM_021557816.2 mRNA upstream 5509 39255819 ~ 39275610 (-) False LOC110486315
XM_021557817.2 mRNA upstream 5509 39255819 ~ 39275633 (-) True LOC110486315
TU1337466 other downstream 66958 39180774 ~ 39181194 (-) False LOC110486310
TU1335834 other downstream 2049512 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 2363812 36884018 ~ 36884340 (-) True G1171149
TU1335522 other downstream 2419727 36819594 ~ 36828425 (-) False G1171057
TU1337573 other upstream 77906 39328216 ~ 39331239 (-) True LOC110486318
TU1338408 other upstream 673612 39923922 ~ 39924959 (-) True G1173645
TU1339538 other upstream 1065808 40316118 ~ 40316859 (-) True G1174658
TU1339628 other upstream 1206585 40456895 ~ 40457681 (-) True G1174741
TU1339785 other upstream 1583593 40833903 ~ 40834636 (-) True LOC110486364

Expression Profile