RNA id: XM_036941030.1


Basic Information

Item Value
RNA id XM_036941030.1
length 3306
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC118936372
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 39315322 ~ 39322438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCCCATGAAAGGTGTGTCCTGTTGGAACTGTAATTTCCAGTAAGCAATTCGCAACCGCAGCTATTTCTATTTGTGTAAAGTGACAAATGATTGTTATCACTATATATCGTATGAAGACTATATACTGATTTATAGattcattgttttttgtttgttcttttgaAGGAATGAGTACGTCCTCAAAACTATAATATATCATCATTGTGTGGTCACAACGCTTGGGACTTTGATAGCTGATGATGGTAAGCAGTCTTTTTAACATAGCCTATAAACATGTAAGTAGATTTAACCACGGTATTTTTGCCTGATCATGATTAATATTTGACAAGCTTTTTGTTTGTTAATTACTTGTAGCAATGAGTGACGGAAATCTTCAATGCTTCAACGACTATGACGAAACTATGGTTTGTCATTTTATAACTGACAAGTCTAAGTGTGCTGAATACAGCATGACGTTGAAACAAAATAGAGGCAAAAATGATTGTACTTTCAAGGAAAAGGAGAGGTCCAATGATGTTTCCAAATGTGGATGCTCTATTGATCCAATGCCCCTTATTTCTGGGGAGGAGTTTAATGCAACACTTTGGAATTCTGGGAAGCGCCTAAATTCCGAAGTCTTCAGTATCAATTACACCATAAAACCCAAAACCCCCACCATCCAATATGTGAAACCAACAAAAAATGGGAATTTCCATATCAAATGGAAGACAAACTACCCTGATAAGAAAGAGTTTTCTAAGAACTTGATTGCCGAATTGAGCTACAGAAAGAAAGGAGAAACAGATGAGGTGTCCAAAAATGAATCAACAACTTCCTATGAATTACTTGGCAGAGACTTGGAGCCAAACACCATTTATGCTCTGAAGGTCAGAACCTATACTGACTGGAGCGGCCGTTTCAGTGACTGGAGTGAAGAGTTGGAATTCACTAACCCTGCATCATCTCGGAAAGTGCTCCAGATTGTCATTGTTTTCAGCTGCATTGCTGTTATCATCATCACAAGTGCTTTGTTTTGGTGCAGTGTTAGACTCAAAACCAAGTTGTGGGATAATATTCCTCAATGTTCAAACCCAGACCTTTTGTATATGGTTCCAGCAGTACCTAAGGTATTGTCTCCTCCCAAAATACTTTTATCCTCCATCtatgttgattcttcaaaaatgGACACCGAAGAAAAAACATGGACAAACCCCGCGACAGTAGATGGGAGCAGTGGAAGAGGCCGTGGCTCAGAGCTTGACTCATCGTCTTCCCTGGGTCATGCCCACACATGTTCCACGAGCCCGGAGCCTAGTAATGTGCAGATCATTAGCCATCTTCAAGAGGCCCTGAGCAAAGTCTTTCCCAGCCTTGTTCCTTTGGATGGGAATCCTCAGTCATTGCTCTTAGCCCCTCCTATGACAGATGATGGTACAGAAATGAACTGCCCTGAGTCAAATCGAGACATTGGTGTGTGTTCATCTGACTACAATCCTCTTCATTTCATGAGTGAGTCTGGAGGCTCTTGTTACAACAATAATACCTACTCCCCCTCAGTGCCCATCAACTCCCTTCAAGAGTTAACACCAAGCAAGACGTCCTCATTTCCTCTGCTCTTTTGTAACTCCTCCTACTATTTTGGTGAGGCTGAAGGGTTGAGAAATGGCCATCCACAGCTGTTTCTTGGTACTGGTCAACAAGACCTTAACTTGTCCACTAACTGTGAACCCCTCTTGCAAACCGACAATTCATTTCACCCGTGTGATGGCGCCAGTGATGATTCAGAGACTACCACGTCATCAGAGGACACCAGTCTGATCTACGGTTCTAACGTGTCCGATGTTATCAGTGTCGTTGCTGGATATCAGAGCTTCAGTGAGGCGGTTGGTAAGGACAGTGAGAGAGGAACTGATGCCTTCATAGATGTGACACTGCCACTTAAGGGTTTCCAGGATGTGGACAGAGAGCCTCTGATTTACGATGTGGATCCATGTTACCACAGCCTGCCTGACCCTGGATGCAGCCTCCCCCCGAGTGATGGCAATTATCAGGCTTTACAGAGCCTGGGACAAAATTGCCCAGATCAGTGGGTTTCAGACAAACTGCTGAACAAGTGTTTGGAGACTGAGATCCATCAAAGCTCCATGGGGAACATGCCTCTAAATGTCATACCCAACTCACAGGGAGGACAATGTCAGATACCTGGAAGTCCCTTTTTTACTGCTTTCTGTTCAGACCAAGCAATGCAAATAGACAATGACAGCTCTTATCATTGTGTGTGATTGGCCGGTAGATACGGTAGACACTTTTGCAGttcacaatttattttattttggggaCTTaagctcatatatatatatatatatatatatatatatatatatgtttttctaTTTTATACAAACTGTTTGAATACCTTTCTGCCATGAAAATGCTGTAGTCTCAAGTTCAGAAATGTTCCACTTTTTGGATGTACTGCTTCTGTAAATAAACATTTGTGTGTGGGAAACTGCAACAGTTAATTGTTGAAGAGATACAACATGACTTGTCTTTGCCTCATCTGTCTGAAACATGTTGTTCATCATCTGGGATGGAAAAAAATAAGGATGTGTACTTCAGTTGAAATACTGAGCAATAACATCTAGATTACACATCAAGGTCGTCAAACTAGTCTCCAGCCTCTAAAAGTTACTTCTCTTCTAATGGCTTCCCAAAATAGTCAAATAGTCAGACAGTTTCATTGCATCTGATGCTTGATAGACAAAATAGTGTTAACAGTACAACCCTCAAGCATGAGGTTGAATTTCTGAAGAAAAAAGTGGTAGGCCTAGTTCCTTATTGCATTGTTTCTTGAAACAAGTACATTGCAGCTTCCATGGAAATACACACCCACAAAGTAGAGCCAGCCCCTGATGTCATAGATGTGTTGCGAATCAGCTTAAACAAAAAATTGGCTTTGTTTAGGGTTATTTTCTGAGGATGAAGTTcatgttttgtagtgtttattgtagAAAACAAACACTTTTTTCCCTTCAAAGCTCTTTGCTTAACTGGCGAAGCTTGAATAAAGACTACCTGACTAGTGACACACATAGCGATGGTTTATCATGCAGAAAATTGTGAGGCGTTTGCCAGTTTAACCATCAATAATATTATACGGTTGCAATGACTGAGGCATTCAGCATAATTTCTTTCACAGTATTGTGGTGGTTTTGTGACAGGATGTTTTTGAACGAAGGCCAACATAGAAGTGTGGAGACACAGGAGGGGATTGTGTAAGGCCATTTTCAGAGCCACAGGTCTGCTATGCCAACTTGTCATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1337507 lncRNA downstream 35458 39278521 ~ 39279864 (-) True G1172823
TU1337494 lncRNA downstream 129226 39185796 ~ 39186096 (-) True G1172816
TU1337492 lncRNA downstream 131470 39182709 ~ 39183852 (-) True LOC110486310
TU1337489 lncRNA downstream 140799 39174308 ~ 39174523 (-) True G1172811
TU1337467 lncRNA downstream 143123 39171951 ~ 39172199 (-) False LOC110486310
TU1337598 lncRNA upstream 43424 39365862 ~ 39366086 (-) True G1172905
TU1337603 lncRNA upstream 46820 39369258 ~ 39369479 (-) True G1172910
TU1337606 lncRNA upstream 47949 39370387 ~ 39370652 (-) True G1172913
TU1337618 lncRNA upstream 51706 39374144 ~ 39375370 (-) True G1172924
TU1337629 lncRNA upstream 63517 39385955 ~ 39386293 (-) True G1172934
XM_036939699.1 mRNA downstream 8924 39300023 ~ 39306398 (-) True il21r
NM_001124623.1 mRNA downstream 9055 39300023 ~ 39306267 (-) False il21r
XM_021557822.2 mRNA downstream 27986 39281943 ~ 39287336 (-) True LOC110486317
XM_021557823.2 mRNA downstream 28096 39281943 ~ 39287226 (-) False LOC110486317
XM_021557817.2 mRNA downstream 39689 39255819 ~ 39275633 (-) True LOC110486315
XM_021557824.2 mRNA upstream 5929 39328367 ~ 39331862 (-) False LOC110486318
XM_036941031.1 mRNA upstream 5929 39328367 ~ 39331966 (-) False LOC110486318
XM_021557832.2 mRNA upstream 204335 39526773 ~ 39615110 (-) True LOC110486320
XM_021557834.2 mRNA upstream 416984 39739422 ~ 39760173 (-) False LOC110486323
XM_021557846.2 mRNA upstream 761231 40083669 ~ 40096703 (-) False LOC110486334
TU1337501 other downstream 65012 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other downstream 65012 39248152 ~ 39250310 (-) True LOC110486313
TU1337500 other downstream 65229 39248152 ~ 39250093 (-) False LOC110486313
TU1337466 other downstream 134128 39180774 ~ 39181194 (-) False LOC110486310
TU1335834 other downstream 2116682 37198228 ~ 37198640 (-) True G1171337
TU1337573 other upstream 5778 39328216 ~ 39331239 (-) True LOC110486318
TU1338408 other upstream 601484 39923922 ~ 39924959 (-) True G1173645
TU1339538 other upstream 993680 40316118 ~ 40316859 (-) True G1174658
TU1339628 other upstream 1134457 40456895 ~ 40457681 (-) True G1174741
TU1339785 other upstream 1511465 40833903 ~ 40834636 (-) True LOC110486364

Expression Profile