RNA id: XM_021557846.2


Basic Information

Item Value
RNA id XM_021557846.2
length 5309
RNA type mRNA
GC content 0.52
exon number 30
gene id LOC110486334
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40083669 ~ 40096704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACTATAACGTTTTCATTTTGAAGAAGTGGGCAGGAGCAATTTTACAGCAGCACATTTCCAATACAGCTTTGACAGCAGGATTCATAGACCGCAGAACTTGAACTACATTACTTAACTCGCAGTCGCATCACAGATGTTGACATGTTCATGTTGACCATCTTTCCCCAGGCCACATCTCTTCTGCACTGCAACACGTGCTCCTCCATAATTGATATGCGCTCCTCACTCTCTTAGTTCAGTTGTTATGGTAACCAACAGTTTGCTAGTTGTTGTTAGCAGCTATTTAACTTGAGCTAACTTAGTGGAGCTGACTGCTACTGCTTTCACATAAGAGTGGTCTATCTTGATGATTATAGATACATTAGTTTATGTCAATATGGACACAGATCCTTCAACGCGTTGGAATGCTCTTTTTGACAGCTTCAAACCCCATATTCCGTCCATTGATTCGGATTCTTCATCGTCTGAAAATGAAGAAGACATTTCCATCTTTCGGCGACCAGTAGCCCTTCTTCCTAAACACACAGAGTGCCTAGAGTGTCTGTCATTGGAGGACTCTGAAATAGAGGAGCTTCTAATATCTATGGCACAGCCACAACTGTGTTTGACAGAGGAGACCATTTGCCCTCATAGAGAGCCTACAACTGAACCCCATGGAGTTTATCAAGCTACTGATTTAGCCCAGCAGGGCACACACCAGGAGCTCAGTCCCATAGGTAATACGGTAAATGAGATATGCAGCCATGACTCTATTAGAAATGCAGCTTGGGCAGGAGGCCATCCACGCAGCAACGTTCCTGTGGAGATGAAAGGGGACACCTCAGCGCACCACAGCCATGGCACACTAAACAGACAAAAAACAACTGAGTCCACATCGCCACAGACTTCACACAACACAGCTTGTGAAGAAAACACATTGGAGTCACTCAATGCTTTGAGAAAGACACCGAGAACTGAACCAAATGGCTCTATGAAAAAGCCACTACAAAATAGTCAAACTGTTTTGTCTTTTGAGCCACTGGAGCACTGGGATCTGGACCAGATTCTTCTGACTCTTCAAACAGACAGACTCTTTTTAGGAGGCAGTGTGTCTGACGAACCTATGGAAATACAACCAGATGGAGACAATGTAAGGTCACAGGATACTATATTGGAGAGGCTGTCTGCTTTCTGTAGGACACAGTCATGTGGAGATGCTGAAGAGAAAAGAGAAACTGCGCCAGATAAAACCTCTGGTGTGCCTCAGAAAGCACCTGTCCAACATCCTACCAATTTCAGACAAAATGGTGGATGGAGAAAGTCTTTCAAAAGGATGGCATTTGAGTTGCAGCCAAGCCGCCAGGAAGCGCCCACCGTTTATATTGATTTACGTAACCCTGAGCCTCCCACGAACACAACCAGACCATGTAACAGCGCTTCATCACAATCCATGAAGCTGACCAACCCCAACCTACATGACGAAAACCAATCTGATAAGAAAACAGACAATAATATACGGTCTGGTTTACTGAATGGAAAAGAGGAAGTAACTGGAAAGAGCCTGTTACTCAGAATGTTACGCGAGGCgaacagaaacaggagagagccGGACAGGAAAGATCCAGTTCCAGCAGATTCTACATGCAGAACCCCCAGAAGAGTGTCCTTGAAGGACAAGCTGCCTGAGGCTAACAGTGAGATAACATCTCTGCTTCCAGAGGTGGACAACCAAATCACAATGAAGCGTGACCAAAACAGGCCGCCAGTTGAGAGAACACCTGCTTTTCAGCAGAGTGCTACTACCGGGCAGCCAAAGAAACAAAGTGaccgagagcagagagagcaacaGAAACAGAGAGCACAGCGCCAGCAACAGCTCGAGAAACAGCTGGAAAGCTTTAGACCAACAAGGTCTGCTGGAGACAGGGAGCCTGCCGCTGAGAAGACTGATGTTCTTTATGACACTGAGGCCTCTCACCTACAATCAGTTAATACTCTGCCTGCTGATATGGAGGATAAGGAGTGCTTGCTGCTGACTGTATGCCTCTCCAGTCCCGGCCTGGTAGCCAGCAGCAGTCCTCATTGGAAAGCACCAACAGTGGAGTCAGCCACAACCAAATCCACTATATACAATGCTCTGGTTGCTTGGTTTCTGTCTTTGGTTGGAGCACCAGACCCTCAAGGGGGTGATGACAGGGCTGCTGTACCTTTCTGGGTGGCCGGCCTACAGCAGCTGTGGACAGAGGATGGACTGGCTCTACACATCTGTGCTGTGTCCCACGGAGAGAGCCTACAACTTGTCCGAAAACCCCGGAAATGGGGTGTGGATAAGGGTCATAGTGTGTTCCAGCAGCGTGTCTGCAGGTTCCTCTCTCAGACCTCCCTCAGAGCCATCACCCATTGGCTGCCGCAGCTCAGGAGCCTATTAGACCAAGAGGCCTATCCCCCAACCGTCCACATACCTGCCTCCTgcctggacagttttatctctgTCAACTCAGACAAAATGGCTGTGAAGAGGACCTTCGGTCTGAACCCAGGCTTCTACTGGCAGACTGTGGAGACTCAGGAGCTCAGCTGTCAGAGGCCTGAGACCATGTGCACTCAGCAGCTACACACAGAGATAGCTGTTGCTCTGGGATACACGTCTTTGTTCCTGCATCCCTTGGTGGTTCACCACACCCTCCAGCTTCTCCACAGCTCAGGCCTGGATGTGTGTGGCCTCCGCCTCCTTTACCCTCCTCCTGACCTTCTGACCAACAGCGCCGGCAGGGTATCCTACGGGCAGGGAGATGATGGGGCCGATGAGCCCGTCCTTGCCCTGGCTGTCCGAGGGCCTCACGCCCGCACCGTGTGGCAGGATGTAACAGGCCCTTCAGACCCCCTGTTGGCTAGGAAGACAGACCCGGCATCCATCAACGCCCTGCACTACAGCAGCAAGAACTtgcccctcctctactcccctcgcCTGGCCAGCAGTGTGCACAGAGAACTGGTCACGTGGTTCGCAGGGAGAGTTCCAGGGAATAATTCCCAGAACCCTGACCAGGCtccaactgacagCTCTGCCCCTGGTGATGGAGAGGGAAGCAGCCCCTTGTATTTAACCAGGTCCTCTACCACCCTGTGTGCTACTGTTAAAGTGGACGTGTTCTTGATAGTGTCCCCAGCGGTGGCGCCGTGCTGCTACAGCcgggttctgtctgtgtgtgagggcaGAGGGTTCAGTCTGAGGGGGGTCCAGAGGCTGCAGCTCCCCACCAAACGAACCCAGGCACTGGGACTCACCAGACAGCAGGTGGCAGTGTTCTGCAGTCCGCCCACTGTTACTGTGGATGAGAAGAAAGTTGAGCTGTCTTCCCACTGCCTGGTCTTACttctgaggagagagagtggcCTGCGTCACTGTGCCAGCCTGCCTGCAGCCCTTATGAAAGAGTTCGAGAAGCAGAGGTTGTTGGGATGTATCCACATCAGACTGTCAGATGAAGGAAAGCTGGACCCGAGCAGCTGCTTTCACATGTTGCCCTACAGAGAGAGCCTGCTCCATAGCTTTGGTGGGCGAATGTGGGCCGTACCCAACCCCTGCAATGTGGTGCTGTCCAATCACAGGTGTCCATCCAACCCAGAGCTGGAGCAGGTGGTGGTGCTTACGCTGTCTGGAAGGGACATCAGTCAGGGCCTGAGCCTGCTACACAGGCTCTGGACAGGGGACACAACAGGCGATGTCGTGGAGGATGGATTCGAGCTGCTGGCCCTGAAATGGCTGCCTACATTGTCCCGGCAGCAGGCGCGGGAGGTGAGCCCCTATGAGGTAGGAGACCGGCTGTGGCAGAGCAGCCTGGTGGGCCTGGCCTCCTCCCCTGCCCTGGTGTGTGCTCTGAGGAGGGTGGACGCCTTCGCCACGCTACGGCGGCTCCTGCCACGGGACTACCCCGGGAACCTGAACATACTGTTGTCTCCCACTCCTGAACTGGCCTTCAGACAAGCgtccctcttcttctccctggGAGACATGATCCCTGATCACAGTGTGCGCCCATTACTGAAGTTCCTACCCCCACCTCGCATTAATGTAGCTGGTTCCCAGTGTGAGTCATTGTTTAACTGCATGGTGCAGGGTCCCCAGCCGCTGGTCACACTGTGTCTGTTCAAGCCTGGAGTGTGGGGCCATGCTCTGGGGAAAATCCTCAGCAAAGTCCAGCGGAGTGGCTTCACTGTGGTGGGCCTGCATGTGCTGGTTCTGGACAATAGCACAGCTGTGTCACTGGCGTCTGCTGCAGAGCATCAGGACCCCTCTGCTGTAGAAGCCCATGTCCAGTACTTGAGCTCTGGGCCTTCCCTGGCTCTGTGCCTACAGAGGGAGAATGCTGTGAAGAGGCTACTGGACGTGCTGGGACCTGAGGACCCTGCCCAGGCCCGCGCTCAGGACCAATTCCTCTGGAGGGCCGATTACAGTTCGGACCAGCTACACAGCGGCATCTATGGATCGAGGAGCTATCAGAGAGCTGTTCAGGATGTGAAGAGGCTGTTCCCTCAGGGCCTATGCTGCACAGAGACCAACACCATGAGACAGGAGCAGATACCCAGTGTACACTCAGACCATTTGGCTTGTCTGGCTCGTGAACAGAGCCACACTCTTGCTGCTGCGAACAAGCCATCTTTATCACACCTTATGGCGTCTGGACTGAATGGAGCAGGGCTCTTGGTCCGCAGTGCTCTCTGCCAAACCACCTGCCTGCTGCTGCCCACCAGTGTACTGGGCCCAGCCCCCATCCACCTGGACCTGCTTGAGCAGCTGCTGAGGACAGGCTGCCACCTGGTGGCCGGGAGGATGACTGTCCTGGACGAGACCCAGCGATGTCACATAGCTGAGACACTGGTGCTACCCTCTGAGAGGGATGGGAAGATTTGTTCTCTACCCGAGGGCCCTTGTCTTATCGTTGTTCTACAGAAGGATAACGCTGTGACCTGCTTTGACTCCATGCTTGAAAGtATTTACAGAGAGAGGTCTAACCTTGCCAAAGTGGGGAAAATGCTGATATATCCCAGCACTGAAAAAAAAGCATTGCAGCTTCTGTGCTATCTATTTGATGTCCTGTCTCCTGATAGTCATCATGCCATTGTACCACAGCAATCTGAGTGAACCTTAATGCTATAGAGCATTACCAAGAGGGCCAACCTATTTTCTGGAATTCTGTACCAATACTGTATAAAGAAAATATTGATTTAATTGGTAGTGGTAAGAAACCTTATATAACCCCCACCTAAAAAGTAAAAATGATGGTATTTTCATGTTAAGAAAATAAATGCTGGTTCATGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1339360 lncRNA downstream 20460 40062840 ~ 40063209 (-) True G1174484
TU1339354 lncRNA downstream 29238 40054106 ~ 40054431 (-) True G1174478
TU1339353 lncRNA downstream 30008 40053154 ~ 40053661 (-) True G1174477
TU1339338 lncRNA downstream 32920 40049018 ~ 40050749 (-) True G1174462
TU1339339 lncRNA downstream 36480 40044994 ~ 40047189 (-) True G1174463
TU1339505 lncRNA upstream 171416 40268119 ~ 40268449 (-) True G1174626
TU1339507 lncRNA upstream 172418 40269121 ~ 40269322 (-) True G1174628
TU1339512 lncRNA upstream 183077 40279780 ~ 40280137 (-) True G1174633
TU1339528 lncRNA upstream 205061 40301764 ~ 40301985 (-) True G1174648
TU1339530 lncRNA upstream 206197 40302900 ~ 40303103 (-) True G1174650
XM_021557834.2 mRNA downstream 323496 39739422 ~ 39760173 (-) False LOC110486323
XM_021557832.2 mRNA downstream 468559 39526773 ~ 39615110 (-) True LOC110486320
XM_036941031.1 mRNA downstream 751703 39328367 ~ 39331966 (-) False LOC110486318
XM_021557824.2 mRNA downstream 751807 39328367 ~ 39331862 (-) False LOC110486318
XM_036941029.1 mRNA downstream 761231 39315322 ~ 39322438 (-) False LOC118936372
XM_021557854.2 mRNA upstream 266 40096969 ~ 40099584 (-) True igfals
XM_021557855.2 mRNA upstream 91283 40187986 ~ 40216345 (-) True shisa9b
XM_021557859.2 mRNA upstream 252084 40348787 ~ 40351938 (-) False LOC110486342
XM_036941052.1 mRNA upstream 252084 40348787 ~ 40351938 (-) False LOC110486342
XM_021557858.2 mRNA upstream 252084 40348787 ~ 40351985 (-) True LOC110486342
TU1338408 other downstream 158710 39923922 ~ 39924959 (-) True G1173645
TU1337573 other downstream 752430 39328216 ~ 39331239 (-) True LOC110486318
TU1337501 other downstream 833359 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other downstream 833359 39248152 ~ 39250310 (-) True LOC110486313
TU1337500 other downstream 833576 39248152 ~ 39250093 (-) False LOC110486313
TU1339538 other upstream 219415 40316118 ~ 40316859 (-) True G1174658
TU1339628 other upstream 360192 40456895 ~ 40457681 (-) True G1174741
TU1339785 other upstream 737200 40833903 ~ 40834636 (-) True LOC110486364
TU1340027 other upstream 1188079 41284782 ~ 41289789 (-) False col5a3a
TU1340025 other upstream 1193646 41290349 ~ 41291794 (-) True col5a3a

Expression Profile