RNA id: XM_021557889.2


Basic Information

Item Value
RNA id XM_021557889.2
length 2329
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110486362
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40733709 ~ 40742950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAATCAGAGGAAAACATTATAGTGCATGAGCGCTCGAGACGTTTCCTCAAGCATTGCGGAAGAGAGTAGCGCCGCGAATTCTTGAAAGTGTAGCTGGGCCCCGTTGATACTGCATCATGTCTTGTGCGCTTCTACTGTTGTTGATGAGCTTGGCTTTGGCGATGGGCACTGGCGCAGCGGTGGAGATCCAGCGTCCACGCGGAGTACCACTATCAAAGAGACAGTTCTATGAGGAGAACAAGCCCTTTACCTGTTTGGATGGCTCCAGCACCATCCCCTTTGACCGGGTCAACGATGACTACTGCGACTGCAGGGATGGCTCGGATGAACCAGGTACTGCTGCCTGCCCCAACGGCAGCTTCCACTGTACCAACGCTGGCTTCAGACCCACCTTCATCCCTTCCTCTCGGATCAACGACGGCATCTGTGACTGCTGTGACACGACAGACGAGTACAACAGTGGTGCCACTTGTCAAAACACCTGCAGGGAGATGGGACGCAAGGAGAGGGAGAGTCTGCAGATAATGGCTGAGATCACCAAGGAAGGCTTTCTGCTCAAACAACAACTGATACATGAAGCTAAAAGGGGACAGGAGGACAAACAGGGCAAGTTGACTGAGCTGCAGGGTAGTAAGAAGGGtctggaggagaaggtggaggctCTGAGGACTGTGAAAGAAACAGCGGAGGATCCAGAGAAAGAGGCTAAAGAGCGCCACCTGAAGGCTTGGGAGGAACAAAAAGAACTAATCCGTATGGAGAAGGACAAAACTAGAATGGCTGAGGCTTTTCTGGAGCTGGATGATGACGCAGACGGCTATGTTTCTGTGGCTGAACTGCAGTCCCATCTAGAGCTGGATCCAGACTCCGATGGCTCTCTGTCAGAAACAGAGACTCAGGGATTGCTGGGAGGAGCAGACAAAGTGGACACGTCTACATTTGAAACTGTGTGGAGCGGTATCAAAGACAAGTACCTGTCAGAGGTGTCTCAGGGCCAGTCGGAACCCCCTGCCCCAGTGGAGACCCCCCAGGAGGAGGAGTCCAGGGACTTTGTCTCTGACCATGACTCTGACCACTACCCCGAGGATTacgctggagaggaggatgtggaggacgATGAGGAAGATGAtcacgaggaggaggaggaggaggaagagaagGTCCCTCCCACCGTGCAGACCCCAGAGAAAAGAGAGGACGATGAGGTGTCCATGCCACCGTACGACACAGAGACCCAGAGCCTTATTGATGCTGCCCAGAAAGCCAGGGATGATTTTGATGAAGCTGAGAGGGCTCTCCGGGAAGTGGACGATCAAATGAAGAACCTTGAGAAGGAGATTGGTTTTGACTTTGGGCCAAGTGCAGAATTTGCTTACCTCTACAGCCAGTGCTATGAATTATCCACAAGCGAGTACATCTACAGGCTGTGTCCATTCAATAGGGTCTCCCAGAAACCTAAGTTTGGGGGATCAGAGACCAACCTTGGCTTGTGGGGACAATGGGCTGGTCCTGAAGACAATTTATACTCTGTGATGAAGTATGACCATGGGCAGGGGTGCTGGCAGGGCCCCAACAGGTCCACCACAGTGAAGCTGACGTGTGGGAAGGAGACGGTGGTGACGTCTACGTCAGAACCCAGTCGCTGTGAGTACCTCATGGAGTTCACCACCCCCGCCGTGTGCCAGGAGCCAGCCAGCCTGGACGAAGTACTGCACGGACACACAGAGCTGTAGTGCTCCCCACCAACAGGTTTCTCTTTATGGACTACATGCTAGCCTCACCCTGTTCTGCTCTGCAACAACCAGCTGCTGCACTCAGGCTTCACAAACTGGAAGATGAAGATTCAAAATGGTTGCATGTTCTTTACTCCTACTTGTCTGTTGCTTTAACTTGTTTGTCTAGGTTTAATGTTTCAATTAGATAAAAATAGTCATTCCATTAACCAAAAAAAGGAAGTAGAATTTGAATATGCTGAATCATTTTCTCCTGTGTTCTACTTTGCCAATCAACAAAAGTTGTACTATCTAAGCAGGATAGTCAGTATAATTTTAACTATGCTATGTTGGCTCTAATACTACAGTAGATGATTATGCCAATGATGTGCATTATGACGATGGTGGGCAGTTTGTCTTATGCGCATCAATGGTTTTGCATTGTTACCCTCTGGAAATGACAACGCTCAATGTCATCTTGTAAAAACAACATGGGTCACTCAGATTTGtaaccttttatttttttttctggCATGTAAAGTACAAATAATTAAACAATTCCATGAAAAAGTCTTCAAGCGTCTTCAGCTGAAATCCCAGTAATAAATATCCTAAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0006491 N-glycan processing biological_process

KEGG:

id description
K08288 PRKCSH; protein kinase C substrate 80K-H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1339736 lncRNA downstream 7873 40724686 ~ 40725836 (-) True G1174839
TU1339592 lncRNA downstream 71875 40578110 ~ 40661834 (-) True LOC110486360
TU1339681 lncRNA downstream 139837 40592979 ~ 40593872 (-) True G1174792
TU1339593 lncRNA downstream 191882 40540779 ~ 40541827 (-) True G1174706
TU1339661 lncRNA downstream 197252 40535767 ~ 40536457 (-) True G1174772
TU1339742 lncRNA upstream 1675 40744625 ~ 40747714 (-) False G1174844
TU1339743 lncRNA upstream 1675 40744625 ~ 40748705 (-) True G1174844
TU1339825 lncRNA upstream 115962 40858912 ~ 40859686 (-) True LOC110486365
TU1339832 lncRNA upstream 153711 40896661 ~ 40896873 (-) True G1174918
TU1339847 lncRNA upstream 174929 40917879 ~ 40918146 (-) True G1174933
XM_036941064.1 mRNA downstream 33512 40661785 ~ 40700197 (-) False LOC110486360
XM_036941065.1 mRNA downstream 33512 40661785 ~ 40700197 (-) False LOC110486360
XM_036941066.1 mRNA downstream 33512 40661785 ~ 40700197 (-) False LOC110486360
XM_036941068.1 mRNA downstream 33513 40661785 ~ 40700196 (-) False LOC110486360
XM_021557896.2 mRNA upstream 6145 40749095 ~ 40764069 (-) False LOC110486363
XM_021557895.2 mRNA upstream 6145 40749095 ~ 40775504 (-) True LOC110486363
XM_021557897.2 mRNA upstream 88452 40831402 ~ 40843483 (-) False LOC110486364
XM_021557899.2 mRNA upstream 101101 40844051 ~ 40857251 (-) False LOC110486365
XM_036941089.1 mRNA upstream 101101 40844051 ~ 40859584 (-) False LOC110486365
TU1339628 other downstream 276028 40456895 ~ 40457681 (-) True G1174741
TU1339538 other downstream 416850 40316118 ~ 40316859 (-) True G1174658
TU1338408 other downstream 808750 39923922 ~ 39924959 (-) True G1173645
TU1337573 other downstream 1402470 39328216 ~ 39331239 (-) True LOC110486318
TU1337502 other downstream 1483399 39248152 ~ 39250310 (-) True LOC110486313
TU1339785 other upstream 90953 40833903 ~ 40834636 (-) True LOC110486364
TU1340027 other upstream 541832 41284782 ~ 41289789 (-) False col5a3a
TU1340025 other upstream 547399 41290349 ~ 41291794 (-) True col5a3a
TU1340945 other upstream 1254364 41997314 ~ 41997637 (-) True G1175904
TU1340947 other upstream 1256402 41999352 ~ 42000091 (-) True G1175906

Expression Profile