RNA id: XM_021557902.2


Basic Information

Item Value
RNA id XM_021557902.2
length 4740
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110486368
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40885683 ~ 40892391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGTCCAAACGAGGTGCCGGGTCCTGTTCCATGGAAATTCCCCAAGTTTATATTGTTAGGTTTATTGCGCTTGATGGCTGAAATCGTTCGAAGGGGTCTTCCAGTAAAGAGCACGTGACTTCTCACTCTTTCCCGGTCCTGTTCTTGTAATTCAATACAGAGCCAAAATATAATGTGAGACAACTGACCGCTGCGCCTGTTGAAGAGTTGGGCTGTAGTATGCATGTGGGGACTGGACACTTGGACATCAGACACTGACCGCAAGGAATACCTACATTTTTCTACGTCTTTCTGGGAATAAAATATTAGTTTAATATCAAATGTGTGAAATAATATTTAGTCGGATTTTTCTTGGGTTTCACGTACTTCTCCTCTGGATGGCAGGTGGGCTGGCACATGCCGCCTGTCCTCTTGAGCTCAACCCTCCCAGATTGGTGGTGAGATATGGAGACTCAGTCTCAGTCAACTGCAGCACATCATCCACAGACCACGAGGGGATGGGCTGGGAGGCCACATTCGGAGGTACAAGTTTAGAACAAGATGTCATTGTTGTCACCTGGACTGTGAAGAATTTGACAGACTGGACAATACAACCTAAATGCTACATCACATCAGCAGATGGAAAGCAGTGTTTGGAAACGTTCCCTGTCATTTTATACAAGAttccagacagagtctccatctCTGTTCTGAGCCACTCTGGTCCCATGGTGGAGGGGACACAGTACCAGCTGCAGTGTGACATTCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAAGTGGTACAAAGGGAATGAACTCTTAGATAATGTAACTTACAGTAACGTCAGTAAGAGACCAGAGGATGTGTCAGCTACTCTGATGATCAGCCCCAGTAGAGATGATGATGGAGATCAGTATAGATGTAGAGCAGAACTGGACCTGGGACCAGAGGGACCACAACCCCATCCTACAGTGACATCAGAACCTCTCAACATTACTGTGCACTACGCTCCTGAGTTCCTTCCAGGAAATGACACAGTGGAGGTGAGTGCAGGCAGTGATGTGTCTCTGGACTGCAGTGCTGAGGGGAACCCTCCTCCTGAGCTGAAGTGGACCAACAACACTGCAGAGGGAAATGCCAATGAGATCACTGTGGGGCGCCTGCGTACTCTCAATATCTCCAGAGTAACAGCTAATGCAACTTACAACTGCATAGTCACAAATAGCCTGGGCTCCATCACCAAGCAGATACATGTCTTAGTAGATGTACCTCCACAACAACACCCAACGATGTTCTCCACAGCACCCTCAACTCCAGAAACTATGACCACCCTTCCAGGAACAGCCAAGCCAAAATTAGTTACCTTTTCTCTTGAGCTCAACCCTCCCAGAGTGGTGGTGAGATATGGAGACTCAGTCTCAGTCAACTGCAGCACATCATCCACAGACCATGAGGGAATGGGCTGGGAGGCCACATTCGGAGGTACAAGTTTAGAACAAGATGTCAACGTTGTCACCTGGACTGTGTATAACCTTACTGATTGGACAATAGAACCCAAATGCTACATCAATCTCATTGACGGCGAACAACTCTCAATAGTACTTCCAGTCATTCTCTACAAGACTCCAGACAGCGTCTCCATCTCTGTTCTGAACCACTCTGGTCCCATGGTGGAGGGGACACAGTACCAGCTGCAGTGTGACATTCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAAGTGGTACAAAGGGAATGAACTCTTAGATAATGTAACGTACAGTAACGTCAGTAAGAGACCAGAGGATGTGTCAGCTACTCTGATGATCAGCCCCAGTAGAGATGATGATGGAGATCAGTATAGATGTAGAGCAGAACTGGACCTGGGACCAGAGGGACCACAACCCCATCCTACAGTGACATCAGAACCTCTCAGCATTACTGTGCACTataAGCCATGCATCAATGCATCTCGACTGCCAGTGAGGATACCTGTGTTCAGGGGCTATCCTGAGGAGTTAGTGTGTGAGGCTGAGGGTTACCCACAGCCCAGGATAAAGTGGGTCTATGACCCAGCGAAGCATGTCAGTGAGGCGGGAGGCAACCTGACTGTCTTTGAGGCAGGGCTCTACAACTGCACTGCCACCAACGACGTGGCGACGAGCTTCATTGTGGTAGAGGTGGTTTTAAATGAGGACTACCTGCCCCTCATAGCGGGCTTCGTGGCCTTCATGGTCGTGGTCATCTCGGTCATCTTCGTCGTCATCTACTCCATCTACTACAAGAACAACAAGATGGGCCGCTACAGCCTGAAGAAGGCCAAGCTCAGCAGCACGCCCAACGGCAACGTGGCGCAGAACGGCGGCCAGGACACTCCGCTCCCGATGACAAAACTGTCTCAGCCAAACATCTACTTCTAGGAGAACGAGTTTTATTGGGATGGGCCACTGAATGAAGAGCCCTCTTTCCCTGCTGAGAGACTAAGTGACAAAGTGAGAGACCAAGTGGTTGAGGTGGTTGAGGGGCTGGTCACAACTCATTCAGCTGTCAGATGCAGGTCTGGATTGTGATAGTTGGGAGTGTCTCCTGACTCTCCTCCAACCTCCCTATGCTTCATATGCACTCCCTTTCCTTTTTAGCACTAAGATTTTAAGTACAGATCAGTCCCTCTATTTCCCCTTCTACTGAAGAACCTGATGAGGTAGAATAACCTCTGTTTTTAGTGTGAGCTATATGATCTATTCTACACATTCAAAATCGCTGATCTTTTCTCTGAAGGACAAGAAGAGGCAGCAAATGGACAAGGTGAAAGCTTTTTGGGAATTGGCTTAATtgaaatatatgttttatatgACTGGTTTTGAAAAAACTGGTTTGTGTTGCATAAGCACCAACAAGGGAATTGTTATGTCATTTTGAATGTCTTTTTTTAGTTTGGTCTGATGACAATGTCATTTCTGTCACATTAAGCAATTGCTTGAAGAGCAGCACATGGTTGAAATTGTGAGAATGTCTCCTTTGCCTGGATGTGATGTCTTGCTTGTGACAAGCAgcttggagtgtaaacctacagtacaatggaggctgctgaggggaagacggctcgtaataatggctggaacggagtgaatggaatgacatcaaacatgtggaaaccatgtgcttgatgtatttgataccattccactaattccactccagccatttccacgagcccgtcctccccaattaaggtgctaccaacctcctgtgctacagtatatgcacacAACCTCTTTAGGTTGTGAGCACAATGATCCCTGAAACCAATTAATGTAGCCTACATGTGAAAAGTATTTTTTCCCCAGAGTACGGATTATATCGTGACATGAAGGGGGTCTCCATTTTTTTACGCGACTTcctacattttttggggggaactAATAGTAAAGATGTATTGTAATGGTAAACATTattaccttttaatgtggcatgaacacaaACAGTCATGATGCGTTCAACTGATTCGCAAAGAAATCACTTCAAAAATGAAGCTACCTGTGCACTTTTGTCCACAAAATAATTCCAGCTTCCAACAGTGCACCCGCCATTTCATGAagggaaagagacatctgttacaaaacaccaaaaagtctGATGACATTCGGCGATTGTCAGGAAGCCTACACTCTTGTAGCCTGAATTCATTGATGCGTCTTGCTGACAAATtgacagaaaaaatatataaaaatgtggACACCTGAAAAGGGGCTGAAATACGGGACGCAACTACAGCTGTCTGTCCCAAGCTCATGCGAGGGCCCAGTTGAAACATTGTTGCAAAGCTCAAAACAGACatcagagaggcagacaggcggAGAATGAATGCGATTGAAAGAACAGTGGGGAACTCATTTAGGGGAGCTCATGTCTCATTTGGGGGTCGGAGCAACTCTGTTACTACTCTACACTGTTCCACTGCATCTGGAGTGTTCAGTGTTTTAACTGCATCACTGTAATGCCTGACTGCATTACAGTGGCggtggtgtgtggtgtatggtgtatcATGGTGTATCACCGTCCAAACTGCAGCAACTACGTGATGCCAtcgcgtcagcatggaccaacatccctgtggaacgtttttgACTTGTAGAATGCATGTCCCGAATAatttaggctgttctggaggcaaagggagTCTGACCCGgaactagatgggtgtacctaatgaACTGGCCAGGGAGTGTATATAACCACAATGTAAATGCATACGTTTTAGGCTACTTCATGTAAACTCAAAGCCTTTTGTGTATGTAATATAAAATATAGAACTGTATATTTATTAAAGTCTGTAAAAATGAGTGACTCAACATTTAAGGGCCCATAGAGTACCTGGCTAATAGAttgaaagggggagggggggggggcttatagGGAAGGAGAGAACAAATCATATTGTACAAAGGGATGGTCAGTATAGAATTTCTATCAATATTGGTCCTCTGGTTGTTAGGAGAGAAAGTATCTCCCCTGATCCCCTTTCGCCACTGTATGTAGTCTACACAAACTTCTGTGGAGATCTTTTGTTTCACAGTCCTCTCATGTCAATACTACTGTATTAAGAAACCTTTTGTATAATATTGCTTTGAGTTATCATTAAAATATTTAGTTTTTTATTATGATAATTATTGTTGTattcagtggcgacccgtcatttgAGACCCATATTTTTAGCAAAACACtgataattaaaaaaatatatatatttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1339825 lncRNA downstream 25997 40858912 ~ 40859686 (-) True LOC110486365
TU1339743 lncRNA downstream 136978 40744625 ~ 40748705 (-) True G1174844
TU1339742 lncRNA downstream 137969 40744625 ~ 40747714 (-) False G1174844
TU1339736 lncRNA downstream 159847 40724686 ~ 40725836 (-) True G1174839
TU1339681 lncRNA downstream 291811 40592979 ~ 40593872 (-) True G1174792
TU1339832 lncRNA upstream 4270 40896661 ~ 40896873 (-) True G1174918
TU1339847 lncRNA upstream 25488 40917879 ~ 40918146 (-) True G1174933
TU1339890 lncRNA upstream 77104 40969495 ~ 40969699 (-) True G1174973
TU1339891 lncRNA upstream 78040 40970431 ~ 40970768 (-) True G1174974
TU1339892 lncRNA upstream 78598 40970989 ~ 40971211 (-) True G1174975
XM_036941090.1 mRNA downstream 1778 40872661 ~ 40883905 (-) True LOC110486370
XM_021557903.2 mRNA downstream 7734 40872661 ~ 40877949 (-) False LOC110486370
XM_021557901.2 mRNA downstream 14021 40869151 ~ 40871662 (-) True LOC110486367
XM_021557900.2 mRNA downstream 16643 40863806 ~ 40869040 (-) True LOC110486366
XM_036941089.1 mRNA downstream 26099 40844051 ~ 40859584 (-) False LOC110486365
XM_021557912.2 mRNA upstream 97196 40989587 ~ 40993993 (-) True eif3g
XM_036941092.1 mRNA upstream 107479 40999870 ~ 41001803 (-) False p2ry11
XM_036941093.1 mRNA upstream 107479 40999870 ~ 41001821 (-) True p2ry11
XM_021556239.2 mRNA upstream 109472 41001863 ~ 41006451 (-) True ppan
XM_036941101.1 mRNA upstream 240558 41132949 ~ 41196761 (-) False LOC110485175
TU1339785 other downstream 51047 40833903 ~ 40834636 (-) True LOC110486364
TU1339628 other downstream 428002 40456895 ~ 40457681 (-) True G1174741
TU1339538 other downstream 568824 40316118 ~ 40316859 (-) True G1174658
TU1338408 other downstream 960724 39923922 ~ 39924959 (-) True G1173645
TU1337573 other downstream 1554444 39328216 ~ 39331239 (-) True LOC110486318
TU1340027 other upstream 392391 41284782 ~ 41289789 (-) False col5a3a
TU1340025 other upstream 397958 41290349 ~ 41291794 (-) True col5a3a
TU1340945 other upstream 1104923 41997314 ~ 41997637 (-) True G1175904
TU1340947 other upstream 1106961 41999352 ~ 42000091 (-) True G1175906
TU1341227 other upstream 1435653 42328044 ~ 42328572 (-) True G1176164

Expression Profile