RNA id: XM_021556239.2


Basic Information

Item Value
RNA id XM_021556239.2
length 2075
RNA type mRNA
GC content 0.49
exon number 12
gene id ppan
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41001863 ~ 41006451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACCGCGCCGGCGCAGTGAGATCCACGTGGTTGAAAAGCAGTATCTGATTGAAATGGAGGACACGGAGAGGCATAGCAGATAATGCTCGATTTTTACATAGCTAGGTTCATCAACGACGTTTTATAATAGTACTTTGTCAAACTTAAACTGCCAGTATGGGGAAGTCCAAGACCAAAAACCAGAAGAAGTCACGTTTGAGTGCGAACCATGTGGCGGAAGAGGTGTTCGGTGCGGTCCCTCACTCCTTCGTGTTTCACCGTGGCCAAGTCGGCAAGAATGTCGGTCAGCTAGTTGAGGACATGCGGCGGGTCATGGAGCCCTTCACTGCAGAATCCCTTAAGGTGAGGAAGAAGAATGTGCTGAAGGACTTTGTGGCTGTAGCTGGACCACTGGGAGTGACACACTTCATGATCTTCACCAAGACGCCCAGTAGTGTCAACATGAGGCTTGCTCGGCTGCCCAAAGGCCCTATGCTCCATTTCCGGGTGACCAAATACTCCCTTATTAAAGATGTGGTCTCGTCACTGAAGAGGCACAGAATGCATGAACAGCAGTTCACACATCATGCACTGCTGGTCCTCAATAACTTTGGCTCAGAGGGCATGCATGTCAAACTTATGGCCACCATGTTCCAAAACATGTTCCCTTCCATCAATGTGCACAAGGTAGCCCTCAACGCCATAAAGAGATGTGTTTTGGTGAACTACGATCCAGTGTCTCAAGAAATTGAATTTCGCCATTACAGCCTGAAAGTAGTCCCTGTGGGCATGAGTAGAGGAGTGAAGAAGCTGATGCAGGAAAAGTTCCCCAACATGAGCAAGTTTGAGGACATCAGTGAGCTGCTGATGAAGGGTGCTAATCTTTCAGAAAGTGAAGCAGAGCAAGATGGAGATCACAACATAACGGAACTGCCACAGATCTACTCCGGGCGTGGTAACATGGCGTCTCAACAGAGCGCTGTGAGACTGACTGAGATTGGCCCACGCATCACCATGCAGCTGGTGAAGATCGAGGAGGGAATGGGAGAGGGGAACATACTCTACCATGCAGTCATCGCCAAGACTGAGGAAGAGCTTCAGGAGATCCTGATCCGAAAAGAGGCGCAGATGAAAGAAAAGCAGGAACGGAAGAAAAAACAAGAGCAGGATGTTGCCCAAAAGAAAGCGTTACGGGAGGAGAACAAGAAAAGAAGCATGGCAGGCATCAAGAGGAAGCgccaggaggaggaagagcatGACCCTGAAGTGGAGGATCCTGGAAACCAGGATAACAGGCCTCCGGTTGTTGAATCTGACGACGAGGCAGAGTACTACAGACAGGCTGTAGGGGAGGAGCCAGATGAAGATATGTTCCCTGCAGCCAAGAGGAGGCAAAGACCTGAAAGGCCCTCAGGAGGACCCTTCAAGAAGAGGAAACCGTTCTCTGGTGACGACAGAAAAAACAAATATGGTTCCAAGTCACCTCATAGGTCTGGTCCAGGAGGGAAACCCAGAGACCGAATGGAGGGTGACAGGGAcaggaaagagggaaagaaattTGGGGGTGGGGGCAAATCTTTTGGAAAGATGTCACCTGGGGGCAAGACGTTTGCAGGAAAGAAATTTGGGGATGGGGGCAAACAGTTTGGAGGGAAGAAATTTGGTGATAGGGATAAAAGATTTGGAGGAAAGTCTGAGCGGGGAAAGAAATTTGGGGGTGATGGGGGTTCTAAGTTTAAGGGCAAACCTCGTCCTGGTGGTTTCAAGAAGGGTCCGGGAGGGGCGAAGGGGGGCTTCAAACAGAGGAAGGGGAAGAGCTGAGCTTCATAACCCTTCGAAAGCCTGGACTGATGCATGCTGAGCGCTCTACCCTGGTAGAACACCAGATGGCAGTATTGACTCACTATTGTGGTCTGCAGTTTCTGATCAACATGAACAGGAATGTATTCCTTCATGATATGACTTAATTATTGCTACAAGTCAGCTGGAGGACTGGATGAAAATGCAATGATGTAATTTTGTACCTTGTGAACATGTTTATATAAATGTTATAAGCGTTGGCAAATAAATTGCTGGATGCAAAGTACAGCTCAA

Function

GO: NA

KEGG:

id description
K14859 SSF1_2; ribosome biogenesis protein SSF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1339901 lncRNA downstream 12473 40988879 ~ 40989390 (-) True G1174984
TU1339892 lncRNA downstream 30652 40970989 ~ 40971211 (-) True G1174975
TU1339891 lncRNA downstream 31095 40970431 ~ 40970768 (-) True G1174974
TU1339890 lncRNA downstream 32164 40969495 ~ 40969699 (-) True G1174973
TU1339847 lncRNA downstream 83717 40917879 ~ 40918146 (-) True G1174933
TU1339927 lncRNA upstream 51617 41058068 ~ 41061452 (-) False G1175006
TU1339929 lncRNA upstream 51617 41058068 ~ 41059935 (-) False G1175006
TU1339930 lncRNA upstream 52314 41058765 ~ 41062560 (-) False G1175006
TU1339933 lncRNA upstream 52314 41058765 ~ 41062560 (-) False G1175006
TU1339932 lncRNA upstream 54178 41060629 ~ 41062560 (-) True G1175006
XM_036941093.1 mRNA downstream 42 40999870 ~ 41001821 (-) True p2ry11
XM_036941092.1 mRNA downstream 60 40999870 ~ 41001803 (-) False p2ry11
XM_021557912.2 mRNA downstream 7870 40989587 ~ 40993993 (-) True eif3g
XM_021557902.2 mRNA downstream 109472 40885683 ~ 40892391 (-) True LOC110486368
XM_036941090.1 mRNA downstream 117958 40872661 ~ 40883905 (-) True LOC110486370
XM_036941101.1 mRNA upstream 126498 41132949 ~ 41196761 (-) False LOC110485175
XM_036941102.1 mRNA upstream 126498 41132949 ~ 41250343 (-) True LOC110485175
XM_036941103.1 mRNA upstream 276027 41282478 ~ 41362985 (-) False col5a3a
XM_036941104.1 mRNA upstream 276027 41282478 ~ 41362985 (-) False col5a3a
XM_036941112.1 mRNA upstream 502927 41509378 ~ 41517437 (-) False LOC110486379
TU1339785 other downstream 167227 40833903 ~ 40834636 (-) True LOC110486364
TU1339628 other downstream 544182 40456895 ~ 40457681 (-) True G1174741
TU1339538 other downstream 685004 40316118 ~ 40316859 (-) True G1174658
TU1338408 other downstream 1076904 39923922 ~ 39924959 (-) True G1173645
TU1337573 other downstream 1670624 39328216 ~ 39331239 (-) True LOC110486318
TU1340027 other upstream 278331 41284782 ~ 41289789 (-) False col5a3a
TU1340025 other upstream 283898 41290349 ~ 41291794 (-) True col5a3a
TU1340945 other upstream 990863 41997314 ~ 41997637 (-) True G1175904
TU1340947 other upstream 992901 41999352 ~ 42000091 (-) True G1175906
TU1341227 other upstream 1321593 42328044 ~ 42328572 (-) True G1176164

Expression Profile