RNA id: XM_021557946.2


Basic Information

Item Value
RNA id XM_021557946.2
length 2410
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110486392
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41716379 ~ 41724910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAAGCATATTAACTAACTGGGTGCAAATAAGCGGTTCCTCTCCGAAACAGTAGACGGCGTGTTCCACGAAATCGTGTTTCTATCCGCAGTTATTTACCAGCGAAACAAATAACAGACGCGCTTTTGAAGGAACAAAGAAAGGAGGTCGGGCTCTTGTTTACGGAAGCCAGGCAGAAATCATAGGCGGCCACCTGTGCTAATGAGCTATCTAGCTTGCTTCGAACATCTGGCTGTGTACGCAACAGTGGGAGGAAGTGTAGTTCTTCAACTGGAGAAACAACTTCTGTGCAATACTCACCAATGAGGAGAATAGCTTGAAATCCACAATCCCTCAGCCAAGATGTCAAAAAGGCCATCATATGCACCTCCCCCCACCCCAGCCCCCACAACTCAAGTGCCCAACACCCCTGGGTTTGTGGGGTACAACCCATACAGCCATCTGGCCTACAACAACTACAGGCTGGGAGGGAATACCGGCAGCAACAACAGGGTAATGAATTCCTCAGGAATCACTGTTCCCAAGCCGCCCAAACCGCCAGACAAGCCGCTAATGCCCTACATGCGGTACAGCCGGAAGGTCTGGGACCAAGTCAAAGCCTCCAATCCGGATCTGAAGTTATGGGAGATTGGAAAGATTATTGGTGGCATGTGGAGGGACCTCACTGAAGAGGAGAAGCAGGACTACTTGAACGAATATGAAGCGGAAAAGATTGAGTACAACGACTCCCTGAAGGCCTACCACAACTCACCGGCTTACCTGGCCTACATCAACGCCAAGAACCGTGCAGAGGCAGCtctggaggaggagagcagacagCGGCAGACCCGCGTTGAGAAGGGAGAACCTTACATGAGCATCCAGCCAGCTGAAGACCCAGATGACTATGATGATGGGTTCTCCATGAAGCACACGGCCACCGCTCGCTTCCAGAGGAACCACCGGCTCATCAGTGACATCCTCAGTGAGATAGTGGTGCCAGATGTGCGCTCTGTCGTCACCACTGCACGCATGCAAGTCCTCAAGCGCCAGGTCCAGTCCCTCATGGTGCACCAGAGGAAGCTGGAAGCAGAGCTGCTGCAAATAGAGGATCGGCACCAGGACAAGAAGAGGAGGTTCCTGGAGACTACAGACTCCTTCAATAGTGAGCTCAAACGGCTATGCGGTCAGAAGGTGGAGGTAGACATGGAGAAGCTTGCAGCAGAGATTGCTGCGGCAGAGGAGGCTGCTAGGCGGCGggcggaggagagggagaaggaagtgGCGGAGCAGGCAGAGAAGACTGCCCAGGAACAGCAAGAGCAGCAGCAGGCAGCAGCGGCCTCCGCTTCGTCTACCCTGCCCATCACTGAACAGAACAACACCACCCCACCAACCACAGAGACCAAGGAGGACCAGGACAAGCCAACCCCTATGGAGACGGAAGAGACTCCTACATCAGAGCCATCTGAGACCCATCCTGAGGCTGAGGAGGGCACACATGCTGCAGAGAAGCAGCAGGGTCCGCCGGTGGAGAGCGTCACGGACGAGGGCACCAGTGACAGCACCGCCCCATCTGAAAGCAGCACCGGACCCCCTGCAGACACCCCTGCCTCAGCTGAACCTGCCCCAGAGGAacgcccagccagccagccctccCAATAGCATCTCTGTAGAAAGGCACACCTCTCTCTGAGCACACTCTCTAACCTATAGACAAGGGCCATGTTTTGTGGGCACAGTGCTGCATATCAAAAATATTGGAATGTATAGAAGTGATTTCATGGGTAGAGATGTCCATAGTTTTGTACATTCTGTATGTTATTTGCGATGTCGTGCAACCCTGTGCCCATTTAAATATGACCCTGTGATGTTCTTCCACCATCCCCACACTCGGTTTGTGTGTTCGACATTTCTATTGATCTTGCAATGGACCTCTGGATTCATACCACAAGCCAACAGTTCCTCTTTAGCTATTTGCTATTGGCGTTGATAGAACAGGGAAGGGCCTTGGCCTAATTTATTCCACACCCAATTGACAACGGTTTTTACATGCTATTTCTGTTGCCTATTTTTATCTAACTTTTAGTTAGTAATCAATATGGTGTGGACTGTTAGTGATGGATTAAATACATAATTCATATGAAATGGCCAGTCCTTGAATATCACCTATTATATCACAGCAAATGGATGATTGTGAACTGTTTTACATGagctgtttgcaactgcacggcTGTCAAACCCTGTTGCTGTGTATCACCACTAGAGAAATGGTCATGATGAACCTCAGATAAAACCTCACGCTTTCAAATGACTGTTTTTACTTGAATTTGAATGATTTTAGTATGCCTCTGCGATTTGCATCTTTTTTTGTACTGTCAAGCCTCTTGCCCAAATAAAAGTAATTTCTGTCTTTCGGACCAATGGCtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1340218 lncRNA upstream 35071 41680882 ~ 41681308 (+) True G1175263
TU1340215 lncRNA upstream 38193 41677982 ~ 41678186 (+) True G1175260
TU1340212 lncRNA upstream 41757 41674361 ~ 41674622 (+) True G1175257
TU1340211 lncRNA upstream 42539 41673580 ~ 41673840 (+) True G1175256
TU1340193 lncRNA upstream 73607 41642506 ~ 41642772 (+) True G1175238
TU1340256 lncRNA downstream 2022 41726932 ~ 41727536 (+) True G1175286
TU1340247 lncRNA downstream 5128 41730038 ~ 41732993 (+) False LOC110486393
TU1340249 lncRNA downstream 6030 41730940 ~ 41732993 (+) True LOC110486393
TU1340259 lncRNA downstream 12922 41737832 ~ 41738067 (+) True G1175289
TU1340273 lncRNA downstream 55495 41780405 ~ 41780816 (+) True G1175303
XM_021557940.2 mRNA upstream 7142 41684862 ~ 41709237 (+) True LOC110486391
XM_021557938.2 mRNA upstream 106204 41607918 ~ 41610175 (+) False LOC110486389
XM_021557937.2 mRNA upstream 113259 41595190 ~ 41603120 (+) False LOC110486388
XM_021557952.2 mRNA downstream 205 41725115 ~ 41731059 (+) False LOC110486393
XM_036941121.1 mRNA downstream 14598 41739508 ~ 41772444 (+) False LOC110486394
XM_021557953.2 mRNA downstream 14599 41739509 ~ 41772444 (+) False LOC110486394
XM_036941119.1 mRNA downstream 14599 41739509 ~ 41772444 (+) False LOC110486394
XM_036941122.1 mRNA downstream 14599 41739509 ~ 41772444 (+) False LOC110486394
TU1340105 other upstream 175699 41539491 ~ 41540680 (+) True G1175164
TU1339027 other upstream 656442 41057620 ~ 41059937 (+) False LOC110486375
TU1339025 other upstream 658178 41055452 ~ 41058201 (+) False LOC110486375
TU1339102 other upstream 713355 41001883 ~ 41003024 (+) True G1174245
TU1339054 other upstream 809906 40905531 ~ 40906473 (+) True G1174211
TU1340269 other downstream 48580 41773490 ~ 41776980 (+) True LOC110486395
TU1340287 other downstream 69450 41794360 ~ 41794807 (+) True G1175317
TU1340321 other downstream 132279 41857189 ~ 41859343 (+) True G1175346
TU1340698 other downstream 201365 41926275 ~ 41926656 (+) True G1175667
TU1341137 other downstream 564181 42289091 ~ 42291866 (+) True G1176084

Expression Profile