RNA id: XM_021558006.2


Basic Information

Item Value
RNA id XM_021558006.2
length 620
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110486413
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42453094 ~ 42456995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCTAGTCATATACCAATGGGATGTCTATCTTCTTCTTTCTCTAATATCTCTGTTCACACGAAAGTTCGATTGTCAACATGGCGGCAGCGATGGATGTTGATACCCCAAGCGCCACGAATAGTGGAGCAAGCAAGAAACGTTTTGAAGTGAAGAAgTGGAATGCAGTGGCACTTTGGGCCTGGGACATTGTCGTGGACAACTGTGCCATCTGTAGGAATCACATTATGGATCTCTGCATAGAGTGCCAGGCTAACCAGGCCTCTGCCACATCAGAGGAGTGCACCGTAGCCTGGGGAGTCTGCAATCATGCATTCCATTTCCACTGTATCTCTCGTTGGTTGAAGACCAGGCAGGTGTGCCCCCTAGACAACAGGGAGTGGGAGTTTCAGAAATATGGACACTAGGTGCAATACTCTGGACCATTACTTGGGCTTCTGCAAGTTTCATGCTTTCTGTTGCTTTCTCCTTCTTCGTATGATAGACTCCACTTTGAGTACATTGCAAATACTGAGGACATCTACCCCCACATCTCATTGTTTTAGGCTTGCTGgaaaacagtatttttttaagTTGAATTTGCAATGTTGTAAATTATAAATAAACAATGTTCTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341908 lncRNA downstream 8870 42443915 ~ 42444224 (-) True G1176718
TU1341863 lncRNA downstream 28208 42424179 ~ 42424886 (-) True LOC110486410
TU1341904 lncRNA downstream 35980 42416887 ~ 42417114 (-) True G1176714
TU1341870 lncRNA downstream 57400 42394786 ~ 42395694 (-) True G1176693
TU1341861 lncRNA downstream 90763 42362093 ~ 42362331 (-) True G1176687
TU1341915 lncRNA upstream 1519 42458514 ~ 42489788 (-) True G1176723
TU1341945 lncRNA upstream 34344 42491339 ~ 42491598 (-) True G1176750
TU1341946 lncRNA upstream 35421 42492416 ~ 42492745 (-) True G1176751
TU1341949 lncRNA upstream 39402 42496397 ~ 42496837 (-) True G1176754
TU1341952 lncRNA upstream 57478 42514473 ~ 42514700 (-) True G1176757
XM_021557999.2 mRNA downstream 17933 42426376 ~ 42435161 (-) False LOC110486411
XM_036942453.1 mRNA downstream 17933 42426376 ~ 42435161 (-) True LOC110486411
XM_036942416.1 mRNA downstream 28186 42395802 ~ 42424908 (-) False LOC110486410
XM_036942418.1 mRNA downstream 28186 42395802 ~ 42424908 (-) False LOC110486410
XM_036942419.1 mRNA downstream 28186 42395802 ~ 42424908 (-) False LOC110486410
XM_021559456.2 mRNA upstream 12261 42469256 ~ 42477048 (-) False LOC110487542
XM_036942448.1 mRNA upstream 12261 42469256 ~ 42477053 (-) False LOC110487542
XM_036942451.1 mRNA upstream 22029 42479024 ~ 42484257 (-) False LOC110486414
XM_021558007.2 mRNA upstream 22029 42479024 ~ 42484604 (-) False LOC110486414
XM_021558008.2 mRNA upstream 22029 42479024 ~ 42484604 (-) True LOC110486414
TU1341227 other downstream 124522 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 453003 41999352 ~ 42000091 (-) True G1175906
TU1340945 other downstream 455457 41997314 ~ 41997637 (-) True G1175904
TU1340025 other downstream 1161300 41290349 ~ 41291794 (-) True col5a3a
TU1340027 other downstream 1163305 41284782 ~ 41289789 (-) False col5a3a
TU1341929 other upstream 12707 42469702 ~ 42471978 (-) True LOC110487542
TU1341944 other upstream 33563 42490558 ~ 42491172 (-) True G1176749
TU1342090 other upstream 345449 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 547761 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 550384 43007379 ~ 43007758 (-) True G1177027

Expression Profile