RNA id: XM_021558008.2


Basic Information

Item Value
RNA id XM_021558008.2
length 2553
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110486414
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42479024 ~ 42484604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCAACGAAACTGCCTGGAACTACAAGTCACATGTGTCTCGCGTCAGCCATGGTCATCGAAGTGTTTAAACGTCAGAACCGAGCGGGAGACAGCTTGTGGGACAGACAGCGCTGTTCTGGAAACAACTAGTTATACGCAGAAATTTGCATTTTGTGTCCTGATGGCGACAGATGCTGTTGCACAGTTGGCCGACTCTCTGGCCAAAACTCAGGTGACTGAGGGAGAGTTGAGTTATAAAGGCCAAGGACGCAAATTCGACAATGCACAATCTGTGgaagagatagtgaaagagatCCAGGAGTTCAAGGGGTTGCAAGCGCTCAGGCTGGAGGGGAACACTTATGGGGTGGAGGCAGCACAGGCCATCGCTAAAGCCCTGGAGACAAAGAGTGAATTTAAGtactGTTACTGGAGTGACATGTTTACTGGGCGGCTGCGTTCTGAGATCCCTCCAGCCCTGAACTCCCTGGGTGCGGCCCTGATGACAGCAGGCGCCAGACTGACCGTGCTGGACCTTAGTGACAATGCCTTTGGACCAGACGGGGTGAAGGGCATCGAGAAGTTGCTCAAGAGCACTGCCTGTCACACACTGCAGGAACTGAGGCTCAACAACTGCGGCATGGGCATTGGTGGAGGCAAGATCTTAGCTGCAGCGTTGACGGAGTGCTATAAGCAGTCCAGTGCACAGGGCACCCCCCTCGGGCTGAAGGTGTTCATCGCAGGCAGAAACCGTCTGGAGAACGATGGGGCCACTGCCCTCGCCCAGGCCTTCCAGCTGATGGGTAGTCTGGAGGAAGTGCACGTGCCCCAGAATGGGATCAACCACCCTGGAGTGACTGCTCTGGCCACTGCCATGCAACACAACCCCCAGCTCCGGGTCCTCAACCTCAACGACAACACCTTCACCAAGAAAGGAGCTATCGCCATGGCACAGGCTCTGAAACATTTGCGTAGTGTCCAGGTGATAAACTTTGGAGACTGTCTGGTGCGTTCCGAGGGGGCTATAGCCATCGCAGAGGCAATCACTGAGGGGCTTCCCATCCTCAAGGAGCTGAATCTGTCATTCGGGGAGATCACAGGAGAAGCTGCACTGCTGGTGGCACAATCAGTCGAGGGCAAAGCCACACTGGAGAAACTGGACCTAAATGGTAACTGCCTGGGGGAGGAGGGCTGTGATGCTCTCAGAGAGGTAATGGATGGCCTGAACATGGGAGACCTGCTGGGATCACTCAGCGACGATGAAGGGGAGccggaggaggaggatgatgatgaagatgaagatgaggaggatgactatgaggaggaggaggaggatgatgatgtggAGGAAGAAGACAGCAGTGTGAATCAGGTTTCCTCTCCTCCGTCAGTGCCCCGATCCCCAGatgcctcctccttcctctgcttccccTCCCCCGACAAGCTGCTCAAACTGGGCACCAAGAGGGCCCTGCTCTTTGAACAGCAGGTAGATGTGGCGGATGCTGGTAAGACAGCGGAGGCATTCCTGAAAATCTCCTCTGTGTACAATGAGGAAGATAAAGATGTTAAGAGTGCTGTCCTAGACAGTATTGATGCAATTCTTAGGAAAGCCTTCGCAAGCCCCTCCTTCCAAGGTTACAACTTTATATCATCGCTGTTAGTAATGCTGGGACTCCTCAAGAGTGAGGACAAAGTGAAGCCGGTGCGTGTAGTACCTGGGCATTTGCAGGCCCTGGAGTACGTTGTGCGTCAGGACTACTTCCCCCAGGACCACATCGCCGTGCTGGAGGCCTTCATGTCCCGGTAAGGGCATGAGTGATGGGTGGCAGCGTAGCTCTCAGACACATCCAGGCCCTGGAGTCGTGCAGCAGCTCCAGGAACATCCTCAAGTCCACACTGGAGCAGGTCAGGCCTGAAAACTGAGTCACACAGGACCGCACAGACTCACGGATTTATGAACAGAACAATTCCCACCCCCAGACATATGGGGGCCTTTAGCGCACACAACAAGGACTTAACTGTTGCACTGCACTCTATTTCGCCAACtcagaagactcacagctggagCCTTGCCCATCATCTTATGGATGTACATTATTTTATGGATGGACCGATTTTGAAATATTACACACAAACATTTGGGAGATGAATGTTGTATTCTGCCTCACCCTCAGTGAAAGGACTGAAATGTGACCTTAAACACAGGTTCGCTCTCCGTATTTACCCAGTAAGTAATGGTTTATATTAAAAGGGTTAAACGGATATAAAATATAAATGTGTGATATGGGCTGCTGTGGAAATGTGATTATGATTTGAATCAAAAGGGAAGAACTGAATAAATGTGTTGATTTCTTTGTTGCAGCTATTAAACAGACACTTTTTGGGTGTCCATATACTGAATGGCCTGGGAACATTTCAATTTCACAGTTGAGCAAGCACTACCCTGAATAAGGATCTAGTCCAACCATGTTTACTTTTTACAGTGGGAAGAAACTATTGATCCGGGGGTAGGTTCTTCTCCCAAATTTTGAAACCTACAgcgaataaaaatataaatgccacatgcaa

Function

GO:      GO:0005098,GO:0032853

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341908 lncRNA downstream 34800 42443915 ~ 42444224 (-) True G1176718
TU1341863 lncRNA downstream 54138 42424179 ~ 42424886 (-) True LOC110486410
TU1341904 lncRNA downstream 61910 42416887 ~ 42417114 (-) True G1176714
TU1341870 lncRNA downstream 83330 42394786 ~ 42395694 (-) True G1176693
TU1341861 lncRNA downstream 116693 42362093 ~ 42362331 (-) True G1176687
TU1341945 lncRNA upstream 6735 42491339 ~ 42491598 (-) True G1176750
TU1341946 lncRNA upstream 7812 42492416 ~ 42492745 (-) True G1176751
TU1341949 lncRNA upstream 11793 42496397 ~ 42496837 (-) True G1176754
TU1341952 lncRNA upstream 29869 42514473 ~ 42514700 (-) True G1176757
TU1341955 lncRNA upstream 34819 42519423 ~ 42519650 (-) True G1176760
XM_036942448.1 mRNA downstream 1971 42469256 ~ 42477053 (-) False LOC110487542
XM_021559456.2 mRNA downstream 1976 42469256 ~ 42477048 (-) False LOC110487542
XM_021558006.2 mRNA downstream 22029 42453094 ~ 42456995 (-) False LOC110486413
XM_021557999.2 mRNA downstream 43863 42426376 ~ 42435161 (-) False LOC110486411
XM_036942461.1 mRNA upstream 51829 42536433 ~ 42543540 (-) False LOC110486417
XM_021558017.2 mRNA upstream 88195 42572799 ~ 42588638 (-) False LOC110486421
XM_021558016.2 mRNA upstream 88195 42572799 ~ 42588640 (-) True LOC110486421
XM_036942467.1 mRNA upstream 125274 42609878 ~ 42612424 (-) True LOC118938457
XM_036942452.1 mRNA upstream 128023 42612627 ~ 42616729 (-) False plbd1
TU1341929 other downstream 7046 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 22078 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 150452 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 478933 41999352 ~ 42000091 (-) True G1175906
TU1340945 other downstream 481387 41997314 ~ 41997637 (-) True G1175904
TU1341944 other upstream 5954 42490558 ~ 42491172 (-) True G1176749
TU1342090 other upstream 317840 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 520152 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 522775 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 554570 43039174 ~ 43049544 (-) False G1176972

Expression Profile