RNA id: TU1341925


Basic Information

Item Value
RNA id TU1341925
length 3582
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110486417
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42536433 ~ 42543540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGATTTCTTACATGGAGAAGCCCTCATTTGTGGAAGGAATAGGGGGGTATAACCTGCAATATCCCAGCCAGGCCTTCCAGCCGGTGGTGCTGGCCAACTAAGCCTTtcttatgagtatttctgttgcaGCAGTAGGGCAGTAATGCTCAAGTATTTTTTGGGAAAATTGTTCTTACTGATACTACATCGTATAATTTGTTTTATCACTACTACAACCTCCGCTATATATTTCAATATGATTATTTCCATATAATTTAatattctgtttttttgttgtggaTTTTGATTTCAGTTTCTCTAACCAGAGGAGTAACCAGCCTCCTATTGCACAGGTGTTTTCATTGAATGTTCAGCAGAGTAAATGCCCTTCAGCTTTGGTCTATTGACAGCAGTATGATAGTTATATTTTTCACTCCACTGTCACGCTGTGAAAAAGGACCAATGTCCTGTAAGATGGCTTTGGAAAGCTTAGCGCTTTGCAATCTGCTCGGCCTTAGTTACCAAAAATGCACAGAGGGGTTTGTGTGGGTTTGGTGAGGTCTTATTCATGCTAACAAGTGTTTAATGTGCTCTTCTGTGGCTTATGGTCATTGTGAATATAGTGGGCCTGTTACTAGAGCCTTGAAACATATCACACACACCATGTCTGAATCGGTTTGGTGCAAGGGATCAGTATTTGCCCTTCATCAGCTCTGAAATGTGTTCATGGGCATGCTAAGAAAGGGAGCCTGTGTGTAGTGTCTTGGCAATAGGGGGGGGGGTTTAATGTGCAGGGTATGAGGAAATGGATCTGTCATGACAGGAAGAATTACTGCCAGGGAGGTCAGCGAACCTTGGTGAAAGTGAGGCAAGTTGATCTTTGTCTTCGGATATGACTACtaatctcccacacacacacgcacaggcacataGAATCTGTCAGCagtgtgtgaaggtgaacgggCGTTGTTGGAGGGGAATAGGATGCTGCTACGCAATGGGGATTGTGATGAATGGCTTAGCGGGACTTTGACTATGAAGGAGAGGTCTTACTCTGCAGGgaaaggaggacagggagggagtaagGAGAGGGGAAATGGATGGCAAGGCAGGGGCATCGATGACGTTTTAACACCTTTTGGCATCTTGGGTGCAATGGCTTTAGACTGACACTTCAAAACCCGGAGCACGTTTCTGTAGAACTTTAGTGGCGTTGCAGCCAAAGGCCCACGCTAGGTCCCCTGCTCTTTAACCCCTTAATTATCTCTGTTCCAGTTGCTGCTCCAGTGGGAGACCAGCATCATATAATGAAAGCTGTTTTCCTTTTCAATTTCCAGGACTATGAATGTTAACTAAACCTGTGTTTTTGTCACTTTATGAAGCCATGTCAGATCATTCTCATATTGATGGTGATGATACCCTGTCTCCATATAGGTAATAGAGGGGGCAGTAATTGTCACCAGGGTTCAGGCAGCCTCCTAACCCCACCTTTCCTTTTGAGCCATCCAGCACTTCATATTATTGGGCTatagatgccccccccccccatgatgaTACAGCTGCATCTGCTAAGAAATGTTGGTTCTGTTCCAATGAGATTTGGATAGCAGGGGGAGTGTCCCTAGCCATCATCTGAATGTTTTCTAGATTGTGCCCATAAACATCTGTGTATAAGCTAACATAAATACTCTTAACTTGTGCTCACACTGGTAATTGCTGTGATAGTCGGTCATATGCGTGTCATTCAAACTGTTTATTTTTCTTTGCGTCCAGGGGTTGGGTTGGGAGGGTTGGGTCGGATCTCTTTATAAATGTAATGTTTGTGAGGGAAGGGTTAGTTTTTACatttgtaatttattttaaattttcTATATTTTTCCTATGTTTTTTCAAAAGTAATGAAGTACTTTTGTAAAGTTGAGAGAGAAGTTATAACAGTAGgaatatgtatatatttcttaTGTTCAGGTTTCCTTTGTTTAATTATGTGCTGAAGTTATTACAAAGATAACTAAATATATATGCAAGTTGGGAATAAATAAAGATGTATAAAATAAAGTATTGAATGTGGATTGTACCTTGTACAGTATTTGTCCAATAAAAGACAGGTAAATGTAATTTGTTAAATTGGGTTTTTGAAGAGCTTCAGAGAGGAATGTTTACAATGGGTGGATAGAGAGTCTGACAGCATCATTCTCAGTCTGTTTCTAAGGGCAGTCTGATAACTTGTGTAAGATTTCTGTTCCTTCATAGTTTATACACTTAAACCAAAAAATCTCCACATTTAAACCAAATCCCCTTAGTAGTGCTCGTATCTTACTAATTGTGTCCCTTAttcattcatattccatctaCATATTGTCCAGTGCCATTAATCTTTGCTTTATACCACTAACCTTATTTGTGTGCCTGAACAGTCCTACTGTGACTGAATTGGCTGCCATTTTCATTCTCGCACAAAGACTGAGGGAAATCAAAAAACCGGTTCCTGCAGTCTAATCCTTGATGAGTATTCACCTCGCATCCATGTGGTAACATTCCCCTGCTCCCCCTACTATAGCCATAACTAAGACTGTCTTTACTCACACTGACCCTGGTCCAGTGCAATGTGTAACTAACGCCATATTCTAGACCACAATTGTGGGAGGGTCTTAGCCCTTTTTAACCACAAATATTCCAATACTATTCATCAAGCGTTTCAAGCAGGTTTAGGAGGAGGATAGTCATTGAATGTGCTGTGATTATGATCAGTGACGGGTCAATCCTGGTGGTGAACAGCCTAGTGATGGagctattttttttgtttgttcatgTTGATTcagtgagatttttggtttccaAAATCCCATCCCACAAGCATCCCAAAGTGCTGCCTTCCCCCATTGCTTAAATAATGGTCAGATTACTCTTGGTAATCGGATGTGTGCTGTATTTAATTCCCTGTGCCTGCAAAGCGGGTCTGGAGGTTTGAGTGGTGGCTTGGAGGCCATGTTGCGGTCACTGACCGCCTGCCAATGGGAAGGCCAGAGGACTGTGACGTTTGAGGGATGGGAGCTGCTCTACTTGAAGTTCTGATGACTATAGGAAGACAATAGATATTGTTTCACATTGGCTTTTTGGTCACAGGATGGACAGTGTTTTGTTGTGGTATAGTGGTTGACTGTTGGTATATGTCTTGCGTTTTAAAGATGAGTAACAGATTACACTATCCTCCATGTAATTAAAAAGTTGTTTTTTAAATCCACACTAAAAGCAGGCTGTTCTATCACAAGGATTGAATCAAAGTGAGAAACAGAGTTTTGTATTGTCTTTTGCTTATCTACGTATGTATTTTATTTAGCACTTTGGACTATTTTGTTGTAATAAAGAAGTATTTTCTATTTAACATTTAAGAATAACTGGATATAATTGAAAAAGTAAGATATATTAATATAGTACTTTCTTTTTTGCCTGTATTTTGTTATCATTTTCCTATTTTGTATCTGATCTGTACACCCTGTAGATGTGTATGAACCTTTCACTACTGAAATGCAATGACCTGTTTTCTGTGCTCCCCCATGGGAATGGGGACTTACTACTGCACTTTCTTATTGTATCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341955 lncRNA downstream 16834 42519423 ~ 42519650 (-) True G1176760
TU1341952 lncRNA downstream 21784 42514473 ~ 42514700 (-) True G1176757
TU1341949 lncRNA downstream 39647 42496397 ~ 42496837 (-) True G1176754
TU1341946 lncRNA downstream 43739 42492416 ~ 42492745 (-) True G1176751
TU1341945 lncRNA downstream 44886 42491339 ~ 42491598 (-) True G1176750
TU1341969 lncRNA upstream 9812 42549877 ~ 42550622 (-) True G1176774
TU1341970 lncRNA upstream 13128 42553193 ~ 42556101 (-) True G1176775
TU1342006 lncRNA upstream 51591 42591656 ~ 42592076 (-) True G1176804
TU1342009 lncRNA upstream 53467 42593532 ~ 42593985 (-) True G1176807
TU1342052 lncRNA upstream 161125 42701190 ~ 42701451 (-) True G1176849
XM_021558007.2 mRNA downstream 51880 42479024 ~ 42484604 (-) False LOC110486414
XM_021558008.2 mRNA downstream 51880 42479024 ~ 42484604 (-) True LOC110486414
XM_036942451.1 mRNA downstream 52227 42479024 ~ 42484257 (-) False LOC110486414
XM_036942448.1 mRNA downstream 59431 42469256 ~ 42477053 (-) False LOC110487542
XM_021559456.2 mRNA downstream 59436 42469256 ~ 42477048 (-) False LOC110487542
XM_021558017.2 mRNA upstream 32734 42572799 ~ 42588638 (-) False LOC110486421
XM_021558016.2 mRNA upstream 32734 42572799 ~ 42588640 (-) True LOC110486421
XM_036942467.1 mRNA upstream 69813 42609878 ~ 42612424 (-) True LOC118938457
XM_036942452.1 mRNA upstream 72562 42612627 ~ 42616729 (-) False plbd1
XM_021558019.2 mRNA upstream 72562 42612627 ~ 42616732 (-) True plbd1
TU1341944 other downstream 45312 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 64506 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 79538 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 207912 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 536393 41999352 ~ 42000091 (-) True G1175906
TU1342090 other upstream 262379 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 464691 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 467314 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 499109 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 499175 43039240 ~ 43049544 (-) False G1176972

Expression Profile