RNA id: XM_036942467.1


Basic Information

Item Value
RNA id XM_036942467.1
length 1509
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118938457
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42609878 ~ 42612424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTTCCCCTCGTCTCTTTCTCTATGTCTGGTCCAAATGGTTTCACTGTATGTTATTCTatggctctcacacacacacacacacagctccatgaGGACAGAGTGAGGCAGCAGGTTCTCTAGTGTGGGCATTAATTACATGACCAGACATCGACATGGCAAAGAAGACCTGTGATCCGGGCACAAGTTGGGACAAACTGCTCATCACCTGTATCCCCTTGACAAGGCCAAAGCCAGCCACAGAATCCCCACCTGTAAAATGGAGTAGCGACGTTCCTCCCCAGTACGACCCGGCAGTGAGTCCAGCTGTCTGGATATCAATGGTCGTCATAGTGAACGGCTCCATCCTGGCAATGTTTCTATGGTTCATCATATACAAAATGCAGGCAAGGCGCAATCACACTGCAGGTGAACCAGAGGCAAGACTTAACCCTCCAGCTAAAGCCCTGCCACCTGTGGAGGGAGACTGTACAGTAGCCGtggtacagagagaggaggaggcccCTCCATCCTGTCCTCAGCTGAATGGTGGGCCCCAAACATGCTTCAGGCAGGAGGTATCCACCTACAGCGGGGCCTCGGTGTGTGGCTCTCTTGGGGAGGTCGGTGGCGTGTTCATGTGCAATGGCCTGAGGGAGCATTGGATCCCACTTCCTGCCACTGAGCTGGGGGATGCTGCTTTGGTGACCACCAAGACTGTGCAATGCTCCGACTGAGAGGACATCATTTTGACATATAAAACCACATGGCCATTGTTAAGCAAATGGACTTATTCTTGCAGTATTGTTGGTACAGTATAATCATTTAGATGCAAGTGTTTACATTTGTGATGGTGTAGGAGTAAAGACAAACCTGTGAGAGAATACTATGGGAGACAACTATGTACCTGTGTTTCTATActtaaatattgtcaaagacaaTAAGACAAATCTGAGTAGATTGGGTTAATGCCAATAATAACAGGGCTGTTATAGGATATTTCTATTTGAACTCTTATACTGTGTAGATTTTGCTGGTAGTTTTAGAATGAAGGTATTATATGGTCAATTATATGGCTTATATGTCGTGCTGTACATTTGTGTATGATGTGGAAAAACAACATGTAATTAATCAAATGCAGTGAAATGATGCAATTTGTTGATATGTGTCAATGTAAAACCAGTTGTAAATATTACTTTAAAACAAGCAAAAATTTGGAATAACATTTACATTCACTTTATAATTCACTTTTAGAAGTAAAGGTGACAACTGCTATTAACCTGGGGATATATTTGACACATCACAATCAACAAAACACAAACTTATTGTGTCGAAATTTTACCCCGACTcatatacaatacagtacatttcGATAAGAAAGAGGTTCTCTGACCTCAGAGATGTAGAGGCAAGGTTTTTGGTTAAACAAAAGTATACTGATATTTTTACAGAAAGTTATTTGGTTTCAATTCAGTGGACACACTTTAATAAAGGTTGGAAACCCTCGAGAAAAACTGTGGGCCTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342009 lncRNA downstream 15893 42593532 ~ 42593985 (-) True G1176807
TU1342006 lncRNA downstream 17802 42591656 ~ 42592076 (-) True G1176804
TU1341970 lncRNA downstream 53777 42553193 ~ 42556101 (-) True G1176775
TU1341969 lncRNA downstream 59256 42549877 ~ 42550622 (-) True G1176774
TU1341925 lncRNA downstream 69813 42536484 ~ 42540065 (-) True LOC110486417
TU1342052 lncRNA upstream 88766 42701190 ~ 42701451 (-) True G1176849
TU1342069 lncRNA upstream 135844 42748268 ~ 42752093 (-) True G1176866
TU1342070 lncRNA upstream 139729 42752153 ~ 42752822 (-) True G1176867
TU1342076 lncRNA upstream 144641 42757065 ~ 42757289 (-) True G1176873
TU1342110 lncRNA upstream 180077 42792501 ~ 42793303 (-) True G1176903
XM_021558016.2 mRNA downstream 21238 42572799 ~ 42588640 (-) True LOC110486421
XM_021558017.2 mRNA downstream 21240 42572799 ~ 42588638 (-) False LOC110486421
XM_036942461.1 mRNA downstream 66338 42536433 ~ 42543540 (-) False LOC110486417
XM_021558007.2 mRNA downstream 125274 42479024 ~ 42484604 (-) False LOC110486414
XM_021558008.2 mRNA downstream 125274 42479024 ~ 42484604 (-) True LOC110486414
XM_036942452.1 mRNA upstream 203 42612627 ~ 42616729 (-) False plbd1
XM_021558019.2 mRNA upstream 203 42612627 ~ 42616732 (-) True plbd1
trnar-ccu-48 mRNA upstream 6817 42619241 ~ 42619313 (-) True trnar-ccu-48
XM_021558020.2 mRNA upstream 10226 42622650 ~ 42630460 (-) False LOC110486423
XM_036942456.1 mRNA upstream 10226 42622650 ~ 42630496 (-) False LOC110486423
TU1341944 other downstream 118706 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 137900 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 152932 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 281306 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 609787 41999352 ~ 42000091 (-) True G1175906
TU1342090 other upstream 190020 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 392332 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 394955 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 426750 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 426816 43039240 ~ 43049544 (-) False G1176972

Expression Profile