RNA id: XM_036942428.1


Basic Information

Item Value
RNA id XM_036942428.1
length 6336
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110486424
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42634553 ~ 42654428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTTTGAAAGATACTGAAGGCCTTATAAATACCCTGTGGATAAAAGTTTCACTTCAGTCTACATTGTGAACAGACAACAAATGGATATCACTTTGCAAACTgaagaatagctgctgcttcttcaacagataatggggatccaaagAAAAATCATGAACTGAAATTTTGTTGCAGTGACTAGTAGCAGCTAATAATGGAGACTGGAGAAAATAAGGAAATGGAGACAGAGACTGAGGACGCACTGGATCCGTCGTCTGAGTGTACATATCAAGGAGAAGAACATTTGGAGCCTGAGGCCCTTGacatcacagacagagagagtcaacACAGCGACCAACAGGATGACAAGACAACCAAGACTGatgaagaaaagacagaaatcACAACGTCTTCTAATTTTGCACAAAGCATGACTCCTGTTCTGACAATTGCATTGATTGGTGGCACTGATTCTATGGAGATTGAATCTGGaaatctccttcttggtcaagatGATCTACCAGCAGCAGAACTCTCACAGATAGCACCCAGGATGTATGATTTGTCCGGTCGTTGTGTCTCTGTCATCAACATGCTGGGCTTGCAGAGTTCTGAACTTACCCAGGAGAATCACATAGGTCCACTTGTGCATAAGCAGGGTATCAATGCTGTCCTCTTACTTCTACCATTGGGCCAGCATATTGATGAATTCAAAATGGGAGTGGGGTGGCTGGAAAGAATGCTTGGAGAGGGAGCCCTTGCCTTTACAATAATCGTCTTTACCCACAAGAATGACCAAGACTTTGGGTTGGGTGATCTAAAGGACAACAATGATCTGATGGATCTCACAGAAATGTGTGGAAATAGGTATCTCACCTGCAAAAAGAGTATGAATGATCCAACCGAGATTTCAACATTACTTGAACAGATAGACCTCATGGTGTCTGAAAATGATCCATGCTGCTACACAGGAGAAATGTATGATGAAGAGATCAGGAAACAGCAACTGAAAACAGATTGGGGTGACCGATCACAAAGCGAGGAGAAAACTGCATCAGTTCCAGATGACTTGCCTGAAGATGGTGTTGCAAACAAAGAAAAGGGAGAAGAAAAGATACTTGAAGAAATCGGCGGGAGTTTAATTGAAAAAAACATCCCAGAAAATATACAACTAGCAAAAGTAGCAGAGCTCATGTGTAGACTTCACCTTCAAGATAAATATCAAGATAAGTTGACAACTGCAGACTTCCTGAACATTGGCTCTTCTGCTCAACATCAACATGAACCCCAAACAGAGAACAAACTTGCTCATACTTTCCTACAAAGGTTATTGATGCTGGACTACAGAGCCAGGTACATTCCTGTAAGAGATGAGAATAGTGAGATGCATGACACAAATGACAACAGAAATGATAATGCAGAAACAGAAGAAAGTGCCTTTGATGCCCTTTTCAACAAGAACACAGTCTCTGGTGATTTAAAGAGGAACACGCATGTTCACCCAATGGACGTCCAGATGGCAGTGTTTCACTGTTCAGACAGTTTCCTTCGGCAGTTCATGGTCACAAAGCTGTCCTTGTGTCAGTATGCCTTGCCTTTGCTTGTGCCAAATCCATTCACCAAAGAGATTGAATGCCCTTTGTGGACATTTCGACAAATCAGAAAAACCTGGAAGTCCACCAATGACTCTAATATAGTCACTAGCCAAAGTATGCCTATTTACAAGGCAGAAACACCAATGGTGTCATTCTTTAGGCTTGGTTCTGTGTCCTCATCAAAATCTCAGCTGATGAGCAACTTGATCAACCAACGTCACAGCACATTCTTCCACAGACACTGTCCAGGAAGCAGTAAAACCTGCCTCCTAATGGATGGGGTGGTAGAGATTGCATGGTATTGTCCTGCTGGGAAGCCCAATGATATTTTCACTGATTGTGTTGCATTCTGTAATCTCCATGGTGACGCAATTGCGAAAGAAATTCAGCGTGACAGACTGATTGAAAAAGCCTCAGTCAATGTTATCCTTTTACCAAGTCTTGGAAAAGGCGACAAAAGTATGGCAATCGTGCAGGAGCTGTTCAAGTCTTCTAAACCTCTGATATGTCTGCTCACTGAAGAGGATTCTGTTGCAACTGAAATtaaaaagggaaagtacaaaatggGTTTGAGAGACAGAAATCAGTCAGATGTGTCTGAGGAACTAAAAAGGATCATTAGAAATAATTTGTCAAGACCATGTTGCTCCTTCAAACTTGAGGACATGGCAGAGTACTCAGGGTTTAGAGTAGATGAGGATGATGAAGATTGCCAAGTAGGGAAGACAAATGCTCTGCAGATAACAGATCTGCTTAAGGAAATGGAACTGTCCAAGATCAAAGAAGAATTTCTTCCATGTCAAGGTAGGCTGTGGCATAATTGGTGTCAAAAAAATAAAGACCTTTATCGTCTCCAAGGGAATCTAGAGATGGAAAGAAGTAAAATACAACATGAAATGATGCAAATTCGACACCATCAACATCAAGTTGCCTTTACTGAACTCATGCAGATGTTTATCACAAGTCTACGATCTCTGGGAGAAAAAGAAAAATCATATTTCCTCAAGTGGGTAGGGATACTACTGGATGACCTGTCCTCAGATGAGCTCTCAGACCTTCATCACAAATATGATGTAAAGTGGTCCGAGGTCCTGGCTTTGAAAAAGAAgcatgataaatcagagcaactGAAAATGAGACAAATGGAGCTGGAAGAAATATCAGAGAAGCTGCAAGCAGCAACCTTCGGATTTGAACACATTCTGAGGGAAATGGGACAGATCTATGAAGCCCATGCCTCTGTGGCCAGGCAAAGCAAAGGAGAAAGTGAGGTGACCGTGTCTTACCTTCCAGAGCTCGCGGCAGAACTTATGATATCGGGACACCCAATGGAACTAATGGATGGTGACGCAGCTCATGTGCCACTGACGTGGATTAATGGGGTTTTAGATGAAGTTATCAAGAAACTAGGAGATCAGAGAGTTTTTGTTTTGTCCATTTTGGGAATCCAGAGCACTGGGAAATCTACAATGCTGAATGCAATGTTTGGACTGCAATTCGCAGTAAGTGCTGGAAGGTGTACCAGAGGTGCTTTCATGCAACTGGTGAAAGTGACCGAGGAGATGAAAGATGACTTTAGGTTTGACTATGTTCTCGTTGTTGACACTGAGGGACTTCGAGCTTTAGAGTTGGCCGGAAAGGCAACAGTGCACCATGACAATGAACTTGCAACTTTTGTCATTGGCCTTGGAAACATGACCTTGATCAACATATTTGGAGAGAATCCTGCTGAGATGCAGGACATCATTCAGATAGCTGTTCAGGCCTTCATGAGGATGAAGAAAGTTAATCTGTCTCcaagttgtgtgtttgtgcaccagaATGTTGGAGACATCACGGCTGGAGAGAAAAACATGGAGGGAAAGAGGCGCTTACAGGACAAACTAGACGAGATGACCCAGTTAGCTGCCAAAGAAGAGGACAGTAATGCAGAGTGTTTCAGCGATGTCATTGCATTTGACATACAAAGAGATGTGAAATACTTTTCCCAGCTGTGGGAGGGCAGCCCACCCATGGCCCCACCAAACCCATGCTACAGTGAGAATGTCCAGGAGCTAAGGAAAACAATCCTCTCTAAAACATCGAAGTCTTTTGGCATGACATTATCACAGTTCAAAAGCAGTATCCAAGACCTTTGGAATGCACTGCTGAATGAAAACTTTGTGTTCAGCTTCAAAAACACACTAGAAATTGCAGTTTACAGAAAACTTGAGATTCAGTATGGAAAATGGATCTGGGCTCTCAGGAGTGCCATGCTAACCATTGAAAATCAACTGCACAATCGAATCGAAAATGGAAAACTTCACAGGGTTGAGAGACATTACCTTGTTGAAGAAATGAGAAAGACTCGTGAAGAAGTGGACAAATCAATGAAAAAGTACTTTGATGAAGACAGAGATAAAGAAATGTTGATTCAGTGGCGAGGGAGATTTCAAACCAAAATGTGTGAGTTTGATGATGAACTTGTGAAGGGAGCAAAAAGAAAGTTAGAGGAGGTTATTCAGCAGAGGGATGCGCGCAAAAAACTGGATGACAAGAAGACACAGTATGAAAACAAGCTCTTCCAAAAGAGCAAAGAACTTGCCTCAAAACTGAAGGACAAGGCAAAGGATGAAAAACAACTTGAGAATGAATTCAATACTCTTTGGGGGGTGTGGGTTGCCGAGTTGACCAATGATACACCTTCCATTATGGACATAAACATATTGGATGATGTGACTTGTATCCTTGGAGAGATCGGTAATGAATTGTCTCTTGTACATGATCGGAAAAGTTGCGGAATGTACCGTGAGATTTGTACCTTGGGGAGTTATTCGAACTATGCAATTGTATCCAAGCACCAAGATCTTTTTAACGACGATCGGCACTCAAGAGATGCTCAAAGGAAGCCAAACAAGGACCAATTGCAGAAAAATAATGTGTGGGGTGCTTTTAAGAGTTTTTTGGGGTTTAAGTCTCCAGAGAACAAGACAATTGACCACATTGGTCCAAGCAACATTCTAACTTACACAGATCATGAATTGATAAGAGCATTCACCAATGATGTTGACAAACAAAGCCAGAAGATAATCGAGACAAAGCCCATAGAAAAGATGGGATACAATGACAGTTACATGCAAGAAATAGCAACTCACGTCAAAGAAAGCGTGAAGGAATTTGAATCAAAGTTTAGAAAATATGCATTCAAAAAGGAGTTTACGATTGATCTTTCACTTTATGTGTGTGAGCTTGCAGGAAGTAAGTTAGCAGATTCCCATAGCAAATTCAGAAGCAACAATGATGCCCTTACTTACCTGGAGCAGAAGAGGCCACAGTACAACAAGATTTTCAAGAGCTACTGCAAAGGATCCACATCTGCAGCTGTGCTTGGTGAGTTCATTTGCAACACACTGAAAGAATCGATTGTACAGGCGGTCTATGACCAGACGGCCATTGACTTAGCTGGAGAAATGCAATCAAGTCACCCACCATTCAGTGGAAACAGGTCTAACATGGAGAAACACATCCTGATATCACTGGTGGAGAAGGAGAACTTTGACAAGTTCATGACCTACATTCACAACCCAAGGAAACACTTTGAGAAATTTATTAGAGAGGATGTAGAGAAATACATGCTCACAGAAAGGTCCAAAGTCCTTGCCTTGATTGAAGGGAACATAACAGCTAAAGAGCAGCGTGTGAGCCATGCAGTGCATACAGCAACAAAGACGGTCAAAAACAGGAATGGAGACACCAACATGTGGCTTAGAGAGCTTTCCAGTGCTCTAAAAGATGAGCTGAAATTTGCTGAAAATCATTTCAGTGATTTCTGTGACATAACTGACTTTGACTTCCTCGAAGAAGAGGTAAGGAAAGATCTTGCCAACAGAATCATAGAGATCAACAGAGGCCTCAGCAATGTATCACTCCTGGACATGAAGCAGTTCAGGGAGAGGCCAGATGAGATTCTGATCAAACACTTTTGTGATTGCTGCTGGGTACAGTGTCCCTTCTGTAAAGCCATCTGCACAAACACCATGGAGGGGCACAAACCGATTGATCACAATGTCCCTTTTCATCGCCCTATAGGAATCATAGGAATGCACTTCAGATACACAGTAGAATTTAGCATCGATTTTTGTACAACTTCAGTATCAAGTAATGGCCGGTTTTACCCATCCCATGAATCAGAGGATACATATCTTTGGAAAGAATACAGAAAAGCTGGCCCAAGATTTGCTGATTGGAGCATCACACCAGACCTCTCTGAACTTCCGTACTGGAAGTGGTTTGTTTGTCGATTTCAAAAAGATCTGGAAAGATATTATGACCTAAAATTCCAGGGCAGAGGTGAAATTCCAATAGAATGGAGGAAGTTCACAAAAGAGCAAGCTATTGAAAGCTTAAAGTAAATCTAAGGGGAGCTCAAATAGTAAAAACATAGACATAATGGCACAAGCATGATATTTTAAACATGTTGACATTGTAAACATGAACATAGTCAGAAACTGAAAAACCTCTTGGCAATGTACAATAAAGCACCGCTTTTACTATTCTAATCAGCTAGGCCTACTACACATCTTATTTTGATTCAATCATTTAACTCAAACTGATAGACTAACAGGAAAAAGCCTAGTTATTGGCCTCATTTTGGGATCAAAAATGTATATGCAGATGTTTTGAGTGTGAGCAATTTATCACATTTCCTGTCAAGTGATAAAGCCTTGTACTATTTGTATTGTATTACCGTAAGCAAATACTCAATAAATGCTCTGAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342009 lncRNA downstream 40568 42593532 ~ 42593985 (-) True G1176807
TU1342006 lncRNA downstream 42477 42591656 ~ 42592076 (-) True G1176804
TU1341970 lncRNA downstream 78452 42553193 ~ 42556101 (-) True G1176775
TU1341969 lncRNA downstream 83931 42549877 ~ 42550622 (-) True G1176774
TU1341925 lncRNA downstream 94488 42536484 ~ 42540065 (-) True LOC110486417
TU1342052 lncRNA upstream 46762 42701190 ~ 42701451 (-) True G1176849
TU1342069 lncRNA upstream 93840 42748268 ~ 42752093 (-) True G1176866
TU1342070 lncRNA upstream 97725 42752153 ~ 42752822 (-) True G1176867
TU1342076 lncRNA upstream 102637 42757065 ~ 42757289 (-) True G1176873
TU1342110 lncRNA upstream 138073 42792501 ~ 42793303 (-) True G1176903
XM_021558021.2 mRNA downstream 3456 42622650 ~ 42631097 (-) True LOC110486423
XM_021558022.2 mRNA downstream 3461 42622650 ~ 42631092 (-) False LOC110486423
XM_021558023.2 mRNA downstream 3653 42622650 ~ 42630900 (-) False LOC110486423
XM_036942455.1 mRNA downstream 3653 42622650 ~ 42630900 (-) False LOC110486423
XM_036942456.1 mRNA downstream 4057 42622650 ~ 42630496 (-) False LOC110486423
XM_021558026.2 mRNA upstream 1393 42655821 ~ 42666014 (-) True LOC110486427
XM_021558036.2 mRNA upstream 127093 42781521 ~ 42787633 (-) False LOC110486434
XM_021558035.2 mRNA upstream 127093 42781521 ~ 42787639 (-) True LOC110486434
XM_021558042.2 mRNA upstream 147142 42801570 ~ 42809120 (-) False LOC110486438
XM_021558041.2 mRNA upstream 179126 42833554 ~ 42855208 (-) True LOC110486437
TU1341944 other downstream 143381 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 162575 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 177607 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 305981 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 634462 41999352 ~ 42000091 (-) True G1175906
TU1342090 other upstream 148016 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 350328 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 352951 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 384746 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 384812 43039240 ~ 43049544 (-) False G1176972

Expression Profile