RNA id: XM_021558047.2


Basic Information

Item Value
RNA id XM_021558047.2
length 4166
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110486441
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42870902 ~ 42880838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCAGCAGCAGGTTCGCTTGACCGTGAGAAGTGAAAATTCATAAAAGGGGATTAACCACACTGAGAGGGATGAGTGAATTCCGATTGCTATCGTAACTTTAGGACTAATTTATTGACTTTTAATTGACGCTTTCGTGGTGTTTGTGGTGTAATATGTGACAAGGGGGAAGCAGGAGCTTACATCTACGGAAGTCCTCTAAAGACCTCTTCCTGTTTCAAACCCCCTTCATCCTcccttcttccccctctccctcccccgtgTACCGTTCCTCTCttcacgctgtctctctgtgaccTTTCCATCATCCATCCACCTTCTTCTCTTTTGTTCCAACCTCGTCCCCTGTAACTCCCGTATCCTGCTGTGCACACTCTCTAccaattgtgtgtgtgccatctaTTGTATGTCTGTGTCGGTGAGAAACCCGCCACCGCGGCGGCGCTCTCTGGGTCCCGTTTCGCCTAAACGCATCTACAGAAACCTGTCGGTCAGGCTGAGGGGCGGAGAGTCCTCTTTTTCCGGAGAGACAGACATGCCGAAACATCCATGCAAGGCCCCTCACACATATAAGAACCTGTGGGAGGCCGTGGAGAATGAGGACACCCTGGCGGTGCAGAGCCTGCTATTCAGGGACAGAGTGTGTGGCGGAGGAGGAGGACGGGataaagagaagaaagagaaggactgggaaagagagagggagaaaggtgtaaACAGAGTGAGTGAGCAGGGCCTGGTACCTCTGGACGTGGCTGCTCTAACCCAGAACTCCCCTCTGCTGCACGTGTTGACCAAGGCAGGAGCCAGACACAACCCCGTCTtgTGTCTTCCAGCGGAGTGGTTGTGCAAGCTGGATGCCCTGGTGATGTTGGCTGACAGGCAGGTGGAGGACAGAAGGGAGGAGCTACTGGGTGGAGCAGGGGCGGGGCCACATGTGCAGGCCGACATACAGAGGCAGCTCCACCTCTGGACTCTGCGGCAGCAGCTGTACTGCAGGATGAGGGAGAGCTTCCACCACACAGACCTCCCTGGCCCACCCAGTAGCGTGTCACTGTTTGTGACCAGTGCCTCTTCCCTGTTTGTGTCCATTCGAGAGCCAACCGGTATCACCACTGGATTGATCACCTGCTACAGAGTGGAATGGAGCACCTCTGCCAACTTCAAGAGTATACTTGGCTCAGCCCAAGTGATCGACACTAAGACCCCCGTCCACAGCATCACAGGACTCAAGACAGGAATGCACTACTTTGTGAGAGTGACCGCCTACAATGTGAAGGGATGGGGCCCGGCTCAGAGCTCCAGCCCAGTCAGTGCTGCCCCCTCCAGCTGGAGGGAGTGTATGGGAGTGAAAACTCCAAGCAGGAACAAGGAGGCTCTAGCCAGGAGACTGTTGGAGCAGACCAGAGAGCCACACTACAAGGGATACTGTATAGAGAGCTGCAAGCCCCAGAGCCCCAGTAAGCGCCTGTCTATGTCTCGCAGCCTGAAGCTGCTCTTCCAGTCTGCCACCAAGTTTGTCCGTCTCCTACAGAGGGGTGTATACCTGGCAACTGTGTTCTACAGAAAGGAAAACATCCTGGTCACAGCAGATGACCAGCTCCCATTGGTGGAGATCCAGTGCTGCTCCACCTCCATCTCTCAGGACTTCCTTTGGTTTGCCAAGTTGTCCTGTGCGTGGCAACAGGTGCCCTGGCTCCAGCAGgccctctcctccgctctctcctcctcttcatcactaCTTCAGAACAGGCACAATATCTTGCAGGCTGTAGCACAACTACAGTCCTCTCTGGGGACAGTAGACTTGGGGCAGGTGTACTATGAGCCTCTGAAGGACAGGCAGGGTAATGTCCTGCTGGTGACAGTTAAGGATTGTGCGGCCCACACAAAACCCCCAGACCTCCCTCTCCACTGGGTCCCCCTGGCCTGGTTGGAGAAGATCCGGAGCAGGACCCCTCTACTCCCAGAGCCTACTGCCATGGACACCCTCACAGAGCAGCTCAAGGAGAAAGTGTCCTTCCACAGACGCAGTGTCCAGTGGGCCCAGCCTGGCCTGTACGTGGGCATCTTGAAGCTGTGCAGCTCAGTGGAGCAGATCAGGGTTCTAGTGCCCCAGAGGCTGCCCAACCTGCTATGCCACGCCAGAATGCGCCACAATCCCCATGTGTCCCGCGATGAATGGGCGTGGTTACAAAGCCACAACATGTTAACAGCCAATGAGGACACAGAGGGTGAGGATGAGACCTCGATGGACATCTCTGGGCTGGGGGAGTTTGTGAGGTCACTCAGGGCCGCTGTCACTCTCCTGTTGACAAAGCTCAACATCCCCCTCTACAGGGCGTATCAGTATGGTGTGTACACTCGGGAGCTGCTGCAGTTTGGGGATAAGATGTCCATGCTGCTCCTACTGCCCCCTAGTGAAGACTTCAGTTCTAGCTACTGGCCCCTAGTGGGCACCAAGGAACCAGGCCTCACAATGCCACTGCAGATCTTTGAGCTGGTGCACTTCTGGACGTACGAGCAAGACTTCCTGTCTCAGTACTGTCAGGTCTGGGTTCGGTTGGAGCTGGACGCCCATCTGTCCCAGCAGGCTTTGCGAGAAGCTCTGGACACGAAGGAGGTGCAGGAGGCCAGAGACCGCCTTGGTCACATCACTCAGCTCTCACAGAGTCTTGAGGTGGTGTGGCGTGAGGCCCGGTGGATCATGGATGTCCTGCAGTGTGTCCGCTCTAAACAGTGGGTGGGGGCGGTGCCTCTGGGCCTGGTCATGGGAGGAGACCCACCTGCCTGCCCAGACGATGAGGAGGATGACAGGCCTACCACCAGAGTCTGGCCCCAGCGCATACTCTCTCAAAATAAAATATCAGAGAGCATTACCTGTACTGTTACAGACGTTGGTGTCAGCAGTGGGATCTCTGAGCCAATATGTATCCCGGGGGTCCATGAAAAGGCTGTGGGTTTAATTGAGGGGGCTAGCAAAGGGGGGTACCCCGTGGACCTCAGTGCCCAACAGCCTGTTGTGGCGTTCAACAGCCTGGACCAGTCAGGAGTTGGGTTCGACAGTGTGGCCCAATCAGAAGTGTTATATCATAACATTATGGCCCAATCAGAAGTGGTATATCATAACATTATGGCCCAATCAGAAGTGGCAGATCATGACATTGTGAACCTGCCAGCTGCCTACAGTGGAGAACTGGAGTATCCTCACAGTTTTGTCAGTGATGTGATCCCGCCTCTACCAGAGCTGGACATCATCTTCCCCACACTGAGTCTgatagatgaagagagggaggaggacccTGTACCTGGGAGGATGGATATGTTTGACAGTTTAAGTCTTGGAGTCGGTGAAAGCGAGGCTTTCTTTGGACTAAACTCTGACTTGAAGAGTGGACCTAAGGGTTGCTCCCTCTCTGATGTGCATCATGATACGAACTCACTGACAGCAGGCCTTAGTTTAGGAGACAGAACCTGTGCAGATACACTGTTCTCAGGTCATTTAGACAGGCTGGCCACATCTGCCCCTCTTCCCATTGTAAGGACCACACCTGCCCAGAGCTGGGATTTACCTACAGAGGACACTATGGTACATGCTGGCAACAGGGGGGGCAGCATGCCAGCCAGGAGCCAGGTTAAGTGGGTGAACTCTAACCAGGCATCCTGATGTATCCAGATATTATTAGAACTGAACGTTACACCGAAATACATTGTACTTACTCATCGTGCCTCTCTAAGAATTTGACAACCAATTCTCAACAAATTCTTAATATGCTTTTAGTGCCTTTAACTAACAAACGGTGGGATATTGTGTGGCAAACGGTGGGATATTCATTTGTTGTTTTCTCATCACATTATCTGACTCTCTGTAGTTGTTCCTGTGGTGATATAAAGGGCCTGTCTCCAAGAGGCCCGGTAGACATGTTCTGTGCTTCTGTACGCGAGAAGTCTCCCTGTTGCAACTTGTATTAAACTGAATTGATGTATGATTGTCTATATCCACAACTGCTATTCTCTTTTGTTCAATGTAAAATACTCTTCACCGTATTGCACTCTATTAACCTGTTGCACTTGTGTCCTTTGAACACACAACTAGCTAGTCTACAGTAAAATCAGTTGAATGGTTTATCTTTATgaaatgacaaaataaaaatattttcagCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342141 lncRNA downstream 10901 42859796 ~ 42860001 (-) True G1176928
TU1342140 lncRNA downstream 12565 42858123 ~ 42858337 (-) True G1176927
TU1342138 lncRNA downstream 14920 42855711 ~ 42855982 (-) True G1176925
TU1342114 lncRNA downstream 24723 42811237 ~ 42846179 (-) True G1176907
TU1342085 lncRNA downstream 59019 42796550 ~ 42811883 (-) True G1176881
TU1342255 lncRNA upstream 126952 43007790 ~ 43008069 (-) True G1177028
TU1342256 lncRNA upstream 128202 43009040 ~ 43009373 (-) True G1177029
TU1342261 lncRNA upstream 137253 43018091 ~ 43018343 (-) True G1177033
TU1342204 lncRNA upstream 138239 43019077 ~ 43020973 (-) True LOC110486451
TU1342267 lncRNA upstream 169558 43050396 ~ 43050602 (-) True G1177039
XM_036942463.1 mRNA downstream 1827 42866847 ~ 42869075 (-) True LOC110486439
XM_021558041.2 mRNA downstream 15694 42833554 ~ 42855208 (-) True LOC110486437
XM_021558042.2 mRNA downstream 61782 42801570 ~ 42809120 (-) False LOC110486438
XM_021558035.2 mRNA downstream 83263 42781521 ~ 42787639 (-) True LOC110486434
XM_021558036.2 mRNA downstream 83269 42781521 ~ 42787633 (-) False LOC110486434
XM_021558056.2 mRNA upstream 112804 42993642 ~ 43003150 (-) False fam234b
XM_021558057.2 mRNA upstream 112804 42993642 ~ 43003150 (-) False fam234b
XM_036942450.1 mRNA upstream 112804 42993642 ~ 43003150 (-) False fam234b
XM_021558058.2 mRNA upstream 112804 42993642 ~ 43003153 (-) True fam234b
XR_005035772.1 mRNA upstream 130662 43011500 ~ 43011654 (-) True LOC118938563
TU1342090 other downstream 61822 42802444 ~ 42809080 (-) True LOC110486438
TU1341944 other downstream 379730 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 398924 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 413956 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 542330 42328044 ~ 42328572 (-) True G1176164
TU1342252 other upstream 123918 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 126541 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 158336 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 158402 43039240 ~ 43049544 (-) False G1176972
TU1342194 other upstream 158735 43039573 ~ 43049544 (-) False G1176972

Expression Profile