RNA id: XM_036942441.1


Basic Information

Item Value
RNA id XM_036942441.1
length 4877
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110486447
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42963102 ~ 42990476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTAAAATAGCCTCCTAAGCCTCCCAAGATTTGACCTAGTCAGCATAAAGAATCTAGCTACTCAACTAAGGAATGTCATAAATTCTTTGATGTGTATTTTAGTAGAAGCTATGTGGTCTGGAAGTAGGTGTCATTGGTTGCTTTTTTGGCAGTGTACAGTCTATATTTCAATATTCAAGTATTCTGAGAAGCCTACTGATCACTTGATTGGTTAGCTTGTTTGCTCAAACGATTCTTACAGATCTGCCCAGGAAGTGGTAAACAGGGCGAGAGTGTAGAACGAAAAACCTCGTAACAAACGGCAGGGAAGTTGTGAAATTGTGTCTTTCAAGAGTTGTATGTGTCAACGACGTCTATGATCTTCAGTTTCTGTTGAAATAGTCCATGGGAAATACATATGATCGATAAGATACGTTTCACCGACCAAGATGGGTAGAAATGGCGgggtttgttttattttttagccTTCCTGCTAGGCAGACAAGTTTTTAAGCGAACGGGTCAGCAGGTAGAAAACTGAAGCAATAATTATTCAACCCCGATCACATTGGTACAAAGTAAAGTTGTTGGACGAGTAGGCTATTGCAACTATTTTTTATTTAAGTGTTTACTTGTTTTTCTCTCAACTGCCTCCTGGGTCCTACGAACATGACGCCCGACCTCCTTAACTTCAAGAAGGGATGGATGTCAAAACTGGATGAGAATGGAGAGTGGAAGAAGCACTGGTTTGTGTTGACCGATGCTGGTCTGAGGTACTACagagactctggggcggaggagAAGGATGATCTGGACGGGGAGGTTGACCTGAAGTCTTGTGTAAAAGTGTCTGAGTTTGATGTAGAGAAGAACTATGGATTTCAAATACAGACGAGGGAGGCAGTTGTCACACTGTCAGCTATGACTGCAGGGATCAGGAGGAACTGGATTGAGGTTCTGAGGAAGAGTGTTCGGCCCAGCAGCTCTCCAGACCTTACACAactGCCTGACAGCAGTAGTGACAAGGAGAACTCTCGCTCCCTGGCCTCCACTCATCGACCACCTTCTCGCCACGGTGATGCTGGATCAGAAATCACCACCTCTGTACGCCGATTTGACTGTGTTGAACTGTCACCAGTGCCCATCCCCTCCAGCCCTCTGCCAGCCActcagagagaggcaggggaggggCAGGGCAGGGAGCACGCCCAatggcaggaggagaggagcagagatgtGACCAGTAGCACATGGGAGCAGGTGCTGTCGAGGAAAGGGCCGGGTGTAGGCTCAGACCCCAGGATAAGAGCAGAGGAGGAAATTGAGAAAAAGTGGGCAGAGTTTGAGCGGCTGCCACTAAAGGAGATGAGGTCACTACTGCCAATGGGCTCACGGTCCAGCCATCCAGCCAATGAGGCGCTGCAGAGGGAGGTAGTGGCGTCTCTGAGGCAGCAGCTGGAGCGTTTGCAGGGAGGAGGGTGTGGTggggggagggtggggggaggtAGCTGTGGTCGGGAGGCTACGTGCGGCCGCAGCCTTCAGGCCATGGAGCGGGCCCACAAACAGGTCCTGGAGGAGCTGCAGAAGCAGCATGCCCGCGAGACCCGAGAGCTGGAGAGGGACCGGGACCGGGTACTGAGGGAGGAGACCCAGGACACAGCAAAAGTTATGGAGACACTGAAGAAGGCCCACaaggaggagctggagagagaggtggagaaggcAAAGAGGCTTGGTGGAGGGAGTGCCAACACACAGACCCTACGCACACAGCAGCAGTTAGAGACCCAGGCCCTGCAGAGGGAGCTGTCTGGCCTGTCTGAGAGGTACTCCCAGAAGTGTCTGGAGCTGAACAGGGCTGAGCAGAGTaacggggagagggagaaagacattaCTTGCAAGGAGAGCGAGCTGGAGCAGCTGAGGAAAGAGAACCAGgacCTACAGGCCCGTTTGACAGAGGAGATCAGCCGCATGCGCTCCATTGTCACGGGCCAGGGGTCGGAGGGTGTTTCCCATAACAACCAGGACAGGCCGTCCTGTGAGCTGGAGGTTCTTCTCAGGGTGAAGGAGAATGAGGTGCAGTACTTGCACAAGGAGATCAGCTGTCTGAGGAACGAACTTCAGTTCCTGAACACGGAGAAGCAGTCGGCCTGTGAGCGGTATAAAGAGGTGCACGGGGAGCTGAGTGGTATGAAGCGCAGGAGCGAGCGGGAGATCCAGAGCCTTAGGGAGCACCTGAGATTGGCCATGGTTGCCCTGCAGGAGGGCCAGAAACTAGGCAACAGCCTGGAACACTGAGACACCGCCTCAAGGGCTGCTCAGAGACACAGAGGTATAGCCGTAGCTCATTATTAAGAGATACATACTCATGCTCACACAACTTTGAAATAGTTGATTACATTGATCTTCTATGATGAAACTGTAATTGCCTAATTTTGGGGGGTTTTCTAGTTGTGTGGGCACAATGGTGACTGAAATAGGAGAGGAGCAGAAGTCTTCGCACCAGAAGATGCCGGCTCGGGGGATCACGATAGTGCCTTAGCTTTCAATCATTCAGCCGATGAGCGGCATAGACTAGTATCAGCTGATCGGTCATATTACACTGGGTTGAACAAATTTTTATCTgcactttttaaacttttttctGTTGTTGATGTGCGAGAGTGAGTGCATGAAAATATTGGTCTGAGAAACTGGATTATTTGTGGAAAGACTGTTGCTGTGATGTATTTGTGACCTGAAACAGCACTGGATTACCTTTCTCTGCATACCTACCTACATGTAGACCTACTATTTACATGTTGACAGTAGCCAACATATAAACAGTTGGTCTACATGTTGGCTACTGTCAAAAGCTGAATAAGGAAGCAGGATATAATTCTCGCCAAAAACAAAACTATTTTCATTTGAGCGTGGATTTGTACAGACTGAGTCATTCCATgccatttcagcaagccatgacacccaccatctcaagATTGTTCCAAAATAGTTTCTGTAATTGGCAACGGGAAAGATTgacattcctgaaacattattttgttgaaacttaatttgatctctgagaaaggtaagtgattgcacccaaattggattttttatttatttataggaTTCAAATTTGGACCAAACTTCTTCCTACTAATGAGTAAGACATGACGAATCTAATAACATTGTCAAAAGCCACCCGCAGACTCACCACACAACACATCACATGCCAATCCAACCTCAACAACCAGTAGACAGTATCAGTTCTTTATGTTTTAACAAGTAGTATGAAGTTGCTGCTTGGAGTACTGCTTCTCcatactatgtaatgtattccctaTGAATCTggtgctgatttttttttttttatccccttCAGAGAAATGAGTAATTGAAGTTACTTGCATTATTTACCATAAAGTAGTGTGAAAGTACTAGGTTTTGACCACTAGATGCCGTGGTCCTGCTATACTGCCGCACTCATCAATTTTTCTGGTCTCTTGTGTTTATTGAATAGATCACAACATTTCCTTTGCAACTTTgtaaacacaaccaatagatttgGCTCATTATGAAAACACATTATGTGGTCATCCTCGATTTCAAGCCAGTCCTCTATGAAAGCAATTGAGTTTGTCATTTTATGCTTAATGTGTCCAGGAAACTGCCCCCTTGTGAGGTTTATTCCCTTCAAAAAAGGTCTGGATTAGTTCCTGTTAGACCATAACTGGTGAACAAGAAAAACATTTAAGCTATAGCAGTTCTAATGGTTTCAATATTATGGTCTTCAATGGTTTAAGTCTCAAACATACAGTGTATAGTGTTTTGTAATGGTATTGGATTGGATTTAATGCTAGATTTCACTAATCACAATGCTGTTTCCTAATAATTTTATTGAAAAACATGACTGCAATGTATTTTATTAGGGTTGTCACATTTTAGTCCCTAGCCCATTTCTCCAAAGTTTTGGACTTGTAGAAGAAGTATTCATATGAGAATTGCACCATAGGGATAGCTCTCTCAGAAAGCTGCCACTTATTGGAATATTCAAGGAACTTGTTGAACATAACTGAAACTATACTAGATGTTGGAGTGGTATTGGCATTTTTTGGGGCCTTACTCATTGGTAGGAAGAAGTTTAGTCCAATTTGGGcacaatcaattagcttaatttatgAGATCAAATTATATattaacaaaataatgtttcaggaatgctaatcGTATCTCTTACAAATATCTACATAAACAATTTTAGGACCGTTTGAGACGGTGTGTTTCAAGCCtttttcttgtgctttttgaggtggaacaaCCTTAATGTTGTATATCAACAATGGTTTCTCGGTGATTGTCATTGTACGCATTTTACTTCGCAAACCAATTTGTATCTTTATTCAGTGTAATATATCATCTTACAATGTGGGTCGCCATTGTGAAGTTAAACTTTATAACAATTTACCATTGGGATTGATACAGAGAAAGTGGTTTGGTACTGTAAATTCCTGGGAAGCCAACTTGGAAATCACTCATTCCTCTGTGTAGATACAAGTCATTTGAATGTGTGCTTTCTGTTTCATATAGTGCCTTCTGTGACTGGAGAATTGCATGTAGAAGTTCGATGAAATGTCGTCTTGCAAGGATTTTTGATGAGGCTAAGAAGATGCATGTTGCGATCCTTTCCCAACCTCCGAACATTGTGTAGGCATGATTGTTTGTGCCACAAAATGTCTAGTGTTGCGTCAATGagccattgttttttttttttttgtatcatgTATTTTGTGAGGAGATGATAAAGTAGACAACTGTCTTTTGACAAGTGTTTTTAATATTTAATGTAGGGCATGTGATATCTTTGTAAAGTACCCTCGTTTTACAAGCAATAAAATGCATGTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341594 lncRNA upstream 321 42964803 ~ 42965047 (+) True G1176460
TU1341593 lncRNA upstream 830 42964333 ~ 42964538 (+) True G1176459
TU1341592 lncRNA upstream 3641 42961488 ~ 42961727 (+) True G1176458
TU1341581 lncRNA upstream 12076 42951119 ~ 42953292 (+) True nol12
TU1341525 lncRNA upstream 90900 42874185 ~ 42874468 (+) True G1176412
TU1341609 lncRNA downstream 18841 43009315 ~ 43009626 (+) True G1176475
TU1341619 lncRNA downstream 33558 43024032 ~ 43024434 (+) True G1176482
TU1341622 lncRNA downstream 35289 43025763 ~ 43026230 (+) True G1176484
TU1341624 lncRNA downstream 43729 43034203 ~ 43035231 (+) True G1176486
TU1341642 lncRNA downstream 60836 43051310 ~ 43051602 (+) True G1176504
XM_021558055.2 mRNA upstream 12062 42951079 ~ 42953306 (+) False nol12
XM_021558052.2 mRNA upstream 16782 42932944 ~ 42948586 (+) False srebf2
XM_021558051.2 mRNA upstream 16782 42932945 ~ 42948586 (+) False srebf2
XM_021558053.2 mRNA upstream 16782 42932945 ~ 42948586 (+) True srebf2
XM_021558048.2 mRNA upstream 33389 42922020 ~ 42931979 (+) True LOC110486442
XM_021558064.2 mRNA downstream 227 42990701 ~ 42993308 (+) True ndufa6
XR_005035739.1 mRNA downstream 10236 43000710 ~ 43001284 (+) True LOC118938458
XM_021558065.2 mRNA downstream 21495 43011969 ~ 43017789 (+) True LOC110486450
XM_021558070.2 mRNA downstream 28052 43018526 ~ 43020625 (+) True rrp7a
XM_021558072.2 mRNA downstream 36540 43027014 ~ 43032851 (+) True wbp2nl
TU1341428 other upstream 235257 42726002 ~ 42730111 (+) True LOC110486430
TU1341375 other upstream 480848 42482377 ~ 42484520 (+) True G1176278
TU1341137 other upstream 673502 42289091 ~ 42291866 (+) True G1176084
TU1340698 other upstream 1038712 41926275 ~ 41926656 (+) True G1175667
TU1340321 other upstream 1106025 41857189 ~ 41859343 (+) True G1175346
TU1341730 other downstream 268701 43259175 ~ 43265156 (+) False LOC110485182
TU1341800 other downstream 407275 43397749 ~ 43402280 (+) False LOC110486464
TU1341801 other downstream 407275 43397749 ~ 43402280 (+) True LOC110486464
TU1341841 other downstream 415694 43406168 ~ 43407942 (+) True LOC110486465
TU1343143 other downstream 1128404 44118878 ~ 44121922 (+) True G1177750

Expression Profile