RNA id: XM_021558073.2


Basic Information

Item Value
RNA id XM_021558073.2
length 2698
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110486454
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43032510 ~ 43039209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAAATAACACGCGTCTCTACACCCCATTCCTGCATTCATACCAAGACATGGAATTACTTTGACACACAGCTGGCGAGAGAGAACATAATGTTGCACAAGCGTGTCACTGCTATGTGTATGTTTTGAGGTGGTATGTGAAAAGCGAATGACAGGTTCTCATTTCAATCACTATTCTGTATTACAaaatacagtaggctacaccGCTGCATTAAGTATTCAGTGTATGAATGTTTAATGCGAGTATAATCTTACGCAGTGGAGATCTAAACACAAATTATATAAACTAGACACTAGACCATGTTACCGCCTGCAATAATGTGCATGGTAATCGGTGGGAATCATTAATGTTAAGTGAATGAAAAGTAGGCTAGATATTAAGTGGAAATGGTTAAGGAAAAAAAAGTGGAGGCGGGGTAGGGAGGGCGGAGACAGTTGTTTATATTCGTGTGTCTGTAACTCGTCAACTCTTCTAGTGAGCTAGAAGCAAGATTCACTATTTCAACCGAGTTGCACTACTAGGTAACAATATTATATAAATACGCGAATAGATATAGGTTCTGATTTGACTTATCCAATAAGGCCGAGGATCAAGGAAAGGAGTGTACAACATTTTAAGTGAATCTCCTTATGTGAATTTTAAAAGTTGGACAAAAATAAGAAGGTAGGCTGTTTCACATAGGAAACAGGCGGAAAGCATAACATAGTATAAAGGCACAACGCGCGCAGCAGAGTGGTGACCTGGCCAGAGCGCGATGTTTGGAATGATAAAGAATTCCATTTTCGGGAACACGGAAGAAACGGACTACAAATTGCTCAGCAGCGAGACCAAGGACGGGGTCAGCTACGAGGTGCGGAGGTACGATGGTGCAAAGTATGCCTCAGTGAGCTCAGAGGGGCGGACCTTTGACCAGGTGATGGGGGAGCTAGTGAGGAAGCTTCTCGTGTACATTGGGGGAAGCAACGACCAAgGGGAGGCAATGGGGACGACAGCACCGGTTATCATCACAGTATATCCCAGGGACGATGGTGTGATGTCACGCCGTCTGGTGGTTAGCCTCAGGATTCCCACCAACTACCAAGTCAGTCCCCCTGTACCCATCGACAGTGCCATCAGAATCGAGGATCGACCCGGCATGACTGTCTACTCACTGCAGTTTGGAGGCTTCGCAGGGGAGACTGAGTACCGAGCAGAGGCCTCTCGCCTAACCAAAACTCTTGGTGAGACTGCCCCATTTCAGCGGAAACAGTACTTCTGCTGCACCTACGATCCACCAATGAAACCCTACGGCCGACGCAACGAGGTGTGGTTCCTACAGGAGGAGCCATAAGGGAAGCATTAAGACCGACTCTTAATAATAACCTATAGTCacttcctctccttcatcttcaCGGATCACTCCACATCTGGATCTTTATCCCCAAAAAATAGGATATGTGAACATAATATGGCAACAATTTGTTTTCAAATCAGTGCAAATGAAGGAGAGGTGATGCAAAGAAGTGTATTAGACTATTGAAAGGTCATAAAGGGGAGGGATGGGCAGCGGGCTACATAGTtactggtccaaagtagtgcaatAGTACGATACCATTATCAGTAACTGGATATTAAGTGGCCTGGGGTAGGAGCCACTAACCACAATGTACCGCTGTGTTATAGGTGGTACATCATTAAGTTCTTAATTTTGTACACCCAGGGTTTGACACTCCCCTTAAAACATGCTTCATAGTACTGGGAAGAAAAGCACATTAAATCAGGCTGTACACATATCACAATTCAGCAGTCTAATTAAATGATGCCTCACTTCACACACCATAAAAACAAAATGACAGTTAAGTATTCAATATGTAAATTAAGTTTTAAAAAGCACAATTCCTTTTCCCAAGGGAGGGGATTGGAAATAAACTAGGAATTGAGCCATAGAGTAGTGATAGTCAAATGTTTTCCTGAGTATGAATTAGTTGGTGGGGAGGGTATGAAGGGGAAATGTGTTAGTCATTCCTTAAGTGTTATCATTTGAGATGTCTAATCCTTCTGTGATGATGACATGAAAACTTTAAGACAGCAGTTGTGTGTAATGAATGTTTTGGCGTGCTTGTATTTGGAGTCTTTGAATTGTAATGTTACTTATTATGATTCTTGAAACTGTATTTTGAAATACCTCTGTATAGTGTGTGATTTTCTGTGAAAATATGGAGTGACGATATCGTCAGGATTTGATAGCGTTTTATATCATAATATGTTATTCAAGATATTACTAATATGATTTTTTGTGCAATACTGACATTTCCTTTTTTTTTAGTTCTATACAAACAAAAGAATGCTTAAAATACTGGCACACCACTGTTTTGGATAAGTTTTacataaacatttatttattattagaTTTTGAATCAATATGAAGAACTCAAAATAAGGAGTATGGTTTACAAACAAGATATTTCAGACATTTGATTAATTTAAGCAGATAATTAAAACCAACCAAACCTCTAACCTAAAACTAGTACAAAAATGTCCTCTCTATGCACTCTGAGAAAATAGCAATTATATGGTCTGTTAGTCACTACAACTCAGTTTAATCAGGAATAAATGAGTGGTTTTCACAGGTTAATTCGTCACAACTGCAAGAAAGCACTGTGTAGCGGGCTAGCGGCTAAATAAATACATGGCCTAGTAACCCCACACTTGTGTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342204 lncRNA downstream 11537 43019077 ~ 43020973 (-) True LOC110486451
TU1342261 lncRNA downstream 14167 43018091 ~ 43018343 (-) True G1177033
TU1342256 lncRNA downstream 23137 43009040 ~ 43009373 (-) True G1177029
TU1342255 lncRNA downstream 24441 43007790 ~ 43008069 (-) True G1177028
TU1342147 lncRNA downstream 156782 42874943 ~ 42875728 (-) True LOC110486441
TU1342267 lncRNA upstream 11187 43050396 ~ 43050602 (-) True G1177039
TU1342268 lncRNA upstream 12282 43051491 ~ 43051871 (-) True G1177040
TU1342270 lncRNA upstream 15039 43054248 ~ 43054452 (-) False LOC118938293
TU1342271 lncRNA upstream 15406 43054615 ~ 43054917 (-) False LOC118938293
TU1342274 lncRNA upstream 18570 43057779 ~ 43064606 (-) True LOC118938293
XM_021558069.2 mRNA downstream 6801 43020947 ~ 43025709 (-) False LOC110486451
XR_005035772.1 mRNA downstream 20856 43011500 ~ 43011654 (-) True LOC118938563
XM_021558058.2 mRNA downstream 29357 42993642 ~ 43003153 (-) True fam234b
XM_021558056.2 mRNA downstream 29360 42993642 ~ 43003150 (-) False fam234b
XM_021558074.2 mRNA upstream 285 43039494 ~ 43049749 (-) True fmc1
XR_005035547.1 mRNA upstream 14460 43053669 ~ 43064650 (-) False LOC118938293
XR_005035549.1 mRNA upstream 14460 43053669 ~ 43065646 (-) False LOC118938293
XR_005035548.1 mRNA upstream 14460 43053669 ~ 43065887 (-) False LOC118938293
XM_036941143.1 mRNA upstream 226570 43265779 ~ 43271667 (-) False LOC110486458
TU1342254 other downstream 24752 43007379 ~ 43007758 (-) True G1177027
TU1342252 other downstream 25186 43004756 ~ 43007324 (-) True G1177025
TU1342090 other downstream 223430 42802444 ~ 42809080 (-) True LOC110486438
TU1341944 other downstream 541338 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 560532 42469702 ~ 42471978 (-) True LOC110487542
TU1342192 other upstream 31 43039240 ~ 43049544 (-) False G1176972
TU1342194 other upstream 364 43039573 ~ 43049544 (-) False G1176972
TU1342193 other upstream 531 43039740 ~ 43049544 (-) True G1176972
TU1342276 other upstream 20221 43059430 ~ 43076353 (-) True G1177047
TU1342419 other upstream 313292 43352501 ~ 43362268 (-) False G1177175

Expression Profile