RNA id: XM_036941144.1


Basic Information

Item Value
RNA id XM_036941144.1
length 1925
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110486458
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43265779 ~ 43272054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGAGATACAACAGCAACAATGTGGTCGCTCTGGCTACTACTGAGTCTCCATGGCAGCAGGGATTTGAATTCATGACAATATTTTGGGAGTTCCCCAAACATCAGTGGtcATCATGTTGGTTCTTCTAGCCGGAATCTTCCTCCTTCACCTCACCGGCATCATCCTCCTCCTAGTGGCAACTATCGACAATGCCTGGTGGATGACAAAAATCGTGTCCACTGATGTGTGGGCCAGGTGGATACTGACCAATGGAACCTGGAGCTCCAACGATCTCCCCGGCCAGTACCCTCAAGaATACCTCCAGGCAGTGCAGGCTAGCTCCATTCTGGCCTGCATATTCTCTTCCCTTGgcctgtttgtgtttgtgggaCAGCTCTTCACTCTGTCAAAGGGACAGAGATTCACCTTCTCTGGCATCTTCCAGCTCCTAGCCTGCCTGTGCATCATGATCGCTGCCTCCATCTACACAGACATCTTTCACAAGAATGAATCGGATGGTTGGTATGGCCACTCCTTCATTCTGGCCTGGATCTCCTTTGCGTTCACCTTCATCTCCAGTATAATCTACTTTGTCCTGCGAAAGAAGACCGCAAACTAGAAGCAGAAGACTAGCCCAAACCCAAGGGACAGGCTCAATATCTTACGATCTGATTGTTTTTTGTACAATTAGGTATGGATATGAGTGTGGGATACAAAAGAGGAGAGTTATCCACAGATTTTCTGGCTTGAATTTTGATTCATGTATCTCTTTTGGTTCCCTGAAGTGTGTCTAAACATATTGTAATAACTTACCTGTCCTGCCCACAGTTATAACTTACCTGTCCTGCCCACAGTTATAACTTACCTGTCCTGCCCACAGTTATAACTTACCTGTCCTGCCCACAGTTATAACTTACCTGTCCTACCCACAGTTATAACCTACCTGTCCTGCCAACATAGTAATAACCTACCTGTCCTGCCCACATAGTAATAACTTACCTGTCCTGCCAACATAGTAATAACCTACCTGTCCTGCCCACATAGTAATAACCTACCTGTCCTGCCCACATAGTTATAACCTACCTGTCCTGCCAACATAGTAATAACCTACCTGTCCTGCCCACATAGTAATAACCTACCTGTCCTGCCCACATAGTAATAACCTACCTGTCCTGCCCACATAGTAATAACCTACCTGTCCTGCCCACATATTACCAAGTCCATGTTTAGTTTTCATGGGCTCTTAATATAAAGTGGGACAACATTTTCAAAGTTGATGAAACTTTTACAGCCCTCATATATTCGTTGGAGAAGGTAGAAGGGAGTCAGAGAGTAGACTGACAGTATCTCATTATTTCAGAATCATAGTCCTGAACTATTCTTgcttacatttgatttatttctcAATTAGGCTCATAATAAAACAAGGCCAAAACTCTCAAAACCAGAAGAATGAATTGACTAGTGCCGCAAACAGAATCCAATTTGAGAAACTGTCAACGATCATTACCCCGTTTGACTTACAGCCCTACTGTAGTGTGCTGAATAAGACAAAAATATGATGTATTTGCCAATGTCCATACATTGAATGGAACATTAGTACTAACCTCACTGCTAACTGGACCCCTCCCCTTTTTAGTTATGTCATTATTTTTGCCAATTATTTTATGCTTTGTACCATTAGTCTTATTGTGTAGGTTAACTTCCGTTTGTCTGAATCAACCTATCCCCCAGACACACCcatggactgacagacagacagacggatagATCTTGAGTGCCTTGAAATCTGACAGAGCATATTTGCTCGCTGCACATTGAGATATATGTGTAAATATGAACATGTTTGGTTCCACATTGTGCTTTGTATGTCTAATGCAATTTTATTTTTGTTACTATTATCAGTTTGATAATAATTTGTATTAAAACCTGATTTAAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342394 lncRNA downstream 10066 43255408 ~ 43255713 (-) True G1177151
TU1342357 lncRNA downstream 46412 43213117 ~ 43219367 (-) True G1177120
TU1342308 lncRNA downstream 171890 43093682 ~ 43093889 (-) True G1177076
TU1342303 lncRNA downstream 177691 43087788 ~ 43088088 (-) True G1177071
TU1342300 lncRNA downstream 180394 43085152 ~ 43085385 (-) True G1177068
TU1342405 lncRNA upstream 1654 43273708 ~ 43273946 (-) True G1177161
TU1342406 lncRNA upstream 1950 43274004 ~ 43274241 (-) True G1177162
TU1342414 lncRNA upstream 8385 43280439 ~ 43280640 (-) True G1177170
TU1342422 lncRNA upstream 82246 43354300 ~ 43362268 (-) False G1177175
TU1342498 lncRNA upstream 135944 43407998 ~ 43408371 (-) True G1177237
XR_005035548.1 mRNA downstream 199892 43053669 ~ 43065887 (-) False LOC118938293
XR_005035549.1 mRNA downstream 200133 43053669 ~ 43065646 (-) False LOC118938293
XR_005035547.1 mRNA downstream 201129 43053669 ~ 43064650 (-) False LOC118938293
XM_021558074.2 mRNA downstream 216030 43039494 ~ 43049749 (-) True fmc1
XM_021558073.2 mRNA downstream 226570 43032510 ~ 43039209 (-) True LOC110486454
XM_021558082.2 mRNA upstream 13702 43285756 ~ 43297849 (-) True LOC110486460
XM_021558087.2 mRNA upstream 74724 43346778 ~ 43353148 (-) True LOC110486463
XM_021559457.2 mRNA upstream 83675 43355729 ~ 43362239 (-) True LOC110487544
XM_036941165.1 mRNA upstream 213628 43485682 ~ 43487100 (-) True LOC118938297
XR_005035555.1 mRNA upstream 215048 43487102 ~ 43489593 (-) True LOC118938302
TU1342276 other downstream 189426 43059430 ~ 43076353 (-) True G1177047
TU1342190 other downstream 216235 43039174 ~ 43049544 (-) False G1176972
TU1342419 other upstream 80447 43352501 ~ 43362268 (-) False G1177175
TU1342420 other upstream 83665 43355719 ~ 43362268 (-) False G1177175
TU1342421 other upstream 83665 43355719 ~ 43362354 (-) True G1177175
TU1342499 other upstream 142105 43414159 ~ 43415103 (-) True G1177238
TU1342871 other upstream 329309 43601363 ~ 43616008 (-) False G1177552

Expression Profile