RNA id: XM_021558082.2


Basic Information

Item Value
RNA id XM_021558082.2
length 2934
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110486460
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43285756 ~ 43297849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGACGAAAACCCACAATACATTGTTTTCTTCACACACGTCTGAAATTTGAGAACGGGTTGGTGTTGCAGCTACATTCTGCAGTGTGAAGAGATTGATCTGCACGTAAATAATTCAGGACACCAGACTATTTCTGACTTCCTGAGTGTAGCGTGTTAGCAAACGTTTGATCATGGCACTGGACGGATGTGGCCAGCTGTGCAAGTGTATCCTCATCCTTTTCAACATCCTTTTTGCCCTGGTGGGTTTTGCAATGTTGGGGTTGGGCTTGTGGCTGAGGTTCAGCTCTGAGACCAGAGGATTTTTCAACATAGACCTCAACACACAACAGTTTGTCATCGGTGTGTCAGTGTTGATTGCGTTAGGAGCAGTGATATTGCTCGTGGCTGTTTTCGGAGACTATGGAGCATGCAATGAGAATAGGACTGCATTGGGAGTGTTTTCCTGCCTGCTGGCTATCCTGGCTGGATTAGAGATTGGAGCCGGTGTCTTCGCCTACATGAGAAGCGatgagGTGGGAGAGCAGCTGGCAAAATTCTATTTAACTGTGTACGCTCAGTATGTGGACAAAGGAGACCCTGGCTTGGCTGTTACCCTGTCCATGTTCCACAATGTGttGCACTGCTGTGGACTCATTGGTGCCTTGGACCCCTTGGTCAAAAAAACATGTCCCGATACCGGCTTTTTGGAGACCTTCACTCTCCCTGCCTGCCCCACAGTGATCGTCAACCTCTTTGAGTCCAATGCGCCTCTGGTGATGGGCCTCTTCCTTGGGACTGCTGCTTTGCTGATCTTGGCCCTGGTGTGCAGCTCCCTCCTCAGCAAAGAGATCCAGCgctcccagtcctctcctcccccctacatcctcctctcctctactgtcctctcccccCCTAACCAGGACCCTGTGGTCTTTTCCCCGCTCCCCGTCATCATACCTGTGGCTGATGCACTGTAACTCCTTACCCCTCCATCTTTATTTACACCAATGATCTATGCTTCTTTCCTTGCACACAGATTCTTTCTTTCCACTGCTCAGTAAGGTCAATGTCTAGTCTCACTGCAAGCTATCCAACTTGTCCCATTTAAATGTCTGGAATTAGTGTTTCTCATCTTCAATTCACACTCCTTTGGTACATTTGCTTGTCTCAGAAGCCATATTTTAGGTGGGGATTTGCACTAATGAATCTCACCCTGTTGCAGCATGTGGTCTAATCCTGAAGGTGATGGGGGGGTGATTGCTCCACCCTGCTCTCTTTATCTGATCCCATTCTGCTTAACCCTTTCCTCCCTGcatccccacctcctcctgttgCTCCTAGATCACGGCCCTGGTGTGCTGCAGCATCCTCATGAAACAGATCAAGAGGAGTCACCTCTCTGCCCTCTGTACCACAGCCAGGCTGTGTATTGAGGGGACAGGACCACCACCATATTCAAACACAGTTTTCTCCACTGGGAGACCAAACCAGATAGTTGTCATTCAGTGATCATCACCCCATCCTTTCACATAATACTTCTGGAGAGGCGCCCAATAAAAACGGATGTCCTAATTAGCTTTCATTCATTTGTGTAGCTGGTCAGGGCTCTAGATCATCTTGACATGCCATTAGCAGTGCTCAGAAGAATGAGACCACACCATCCATTTAGATGACATGTGAACAGGGCAGACAAGACACTGTTGCTCTGTAGCAGCTGTTTGTTCTGCCCCTCTTCCCACTTTAGTCCTTaatcttctttctttttttaaaaacaaccttTTTAATCACTTATCATATGTTAGTGAATAGCTGCTCTTGCTGACATGAATGCTGCTTACATGAAAGGggccatttgattagatattcAATGCTCCGTATGACTGAGGGCACTACTGTAATCAGAGAAGTGAAGCTGctcatgcttttttttttttaaatcactgtcCAACATGTTGACCTTTCCCTGTAATCACATCAGTTTAGAATCATGTCTGTGTTGCAATACATATCAATGTACTGCTGACAGAATTGTGATCCTAGAAAATGTATTTCTTAAAGttaatttttacaaggattaaactGCGAACTGGATTGTTCTGTAGTTGGTAGTCTCCATGCCAAATTGAGTACATTTATTAACAATGTAGTTAATTAACATCTTAATCATTCTTTACGATACTAATCCCCCAACTTCAGCTCCACTTGTACGCTCTGAGGTGATATGAAACACCTTTGATTTCTTCATTCCATGTTTGGATGTTGACGTCGGATGATACCATATACAAAGTTGAGTCCGGGATCCTTAAAAATGTCTCTGGAACGTTAAAATTTGCTTGACTTATTCTATTACGTTGATGCCCATTTCTAGCACGTGAACTGATTTTTATAAGCAAACTAATGTATGCAACTAGGATATATGTCCTTGTAATTTTGAGTCACTCAAACCTTATTGCTATTGGGAATCATCTCCCTGAATGCCCTGTCAAGCAGCAGTTGTAATGGAGGCTGAGTGTGATAGAATAAACACTTCATATGGAGTGCCTTGGTACACTAGCCAAAGTGTTGCCCAGTAAACGCAGGAGTGGGCCCAACGGTGTACCTAACCAGGTCAATTGTCTTGTAGTGAGTCTTTTTTTTATAGATTTTCAATTTCCAACACTTGTTTTGCACTGGAGAACCGCTTATGTTCTGTTGCAAGCTAATACTGACTGTGTaacgtttattttttattttatttaactaggcaagtcagttaacaaattcttatttacatagacagcctaccccagccaaaccctaacgacgctgggccaattgtgcgccgccctatgggactcccaatcccggccggttgtgatggaatcgaaccagggtctgtagtgacacttctTGTACTGAGATTCTGCACCAAATGTGGAGCTTTTTGTTCAAATAAAGTGTTTCATCCCCTCTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342414 lncRNA downstream 5116 43280439 ~ 43280640 (-) True G1177170
TU1342406 lncRNA downstream 11515 43274004 ~ 43274241 (-) True G1177162
TU1342405 lncRNA downstream 11810 43273708 ~ 43273946 (-) True G1177161
TU1342394 lncRNA downstream 30043 43255408 ~ 43255713 (-) True G1177151
TU1342357 lncRNA downstream 66389 43213117 ~ 43219367 (-) True G1177120
TU1342422 lncRNA upstream 56451 43354300 ~ 43362268 (-) False G1177175
TU1342498 lncRNA upstream 110149 43407998 ~ 43408371 (-) True G1177237
TU1342808 lncRNA upstream 173557 43471406 ~ 43472241 (-) True G1177507
TU1342810 lncRNA upstream 174794 43472643 ~ 43473143 (-) True G1177509
TU1342816 lncRNA upstream 182165 43480014 ~ 43562861 (-) False G1177513
XM_036941144.1 mRNA downstream 13702 43265779 ~ 43272054 (-) True LOC110486458
XM_036941143.1 mRNA downstream 14089 43265779 ~ 43271667 (-) False LOC110486458
XR_005035548.1 mRNA downstream 219869 43053669 ~ 43065887 (-) False LOC118938293
XR_005035549.1 mRNA downstream 220110 43053669 ~ 43065646 (-) False LOC118938293
XR_005035547.1 mRNA downstream 221106 43053669 ~ 43064650 (-) False LOC118938293
XM_021558087.2 mRNA upstream 48929 43346778 ~ 43353148 (-) True LOC110486463
XM_021559457.2 mRNA upstream 57880 43355729 ~ 43362239 (-) True LOC110487544
XM_036941165.1 mRNA upstream 187833 43485682 ~ 43487100 (-) True LOC118938297
XR_005035555.1 mRNA upstream 189253 43487102 ~ 43489593 (-) True LOC118938302
XR_005035557.1 mRNA upstream 201951 43499800 ~ 43500729 (-) True LOC118938304
TU1342276 other downstream 209403 43059430 ~ 43076353 (-) True G1177047
TU1342190 other downstream 236212 43039174 ~ 43049544 (-) False G1176972
TU1342419 other upstream 54652 43352501 ~ 43362268 (-) False G1177175
TU1342420 other upstream 57870 43355719 ~ 43362268 (-) False G1177175
TU1342421 other upstream 57870 43355719 ~ 43362354 (-) True G1177175
TU1342499 other upstream 116310 43414159 ~ 43415103 (-) True G1177238
TU1342871 other upstream 303514 43601363 ~ 43616008 (-) False G1177552

Expression Profile