RNA id: XM_021558094.2


Basic Information

Item Value
RNA id XM_021558094.2
length 1750
RNA type mRNA
GC content 0.49
exon number 11
gene id ddx47
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43415407 ~ 43418459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCCGTACATGCGTAGTTTAGCGTAGACGGCATGTTGGCAAACAAGCATGGCGGACGACTCGGGAAAAAGTGTTGCGATAAAAACAGATGGCGCAAAGGATGAAGATTCTAGTagtgatgatgataacagtaacGTTAATATCGCGGAAAATGACAAGCCAGTGAAGACCTTCAAAGATCTGGGTGTAACTGAAGTGCTGTGTGAAGCTTGTGAACAGTTGGGATGGAAGACTCCTACAAAGATCCAGGTAGAGGCCATACCTGTAGCCTTACAAGGAAAGGATGTAATTGGCTTAGCAGAGACCGGCTCAGGGAAGACCGGGGCTTTTGCTCTGCCCATCCTGCAGTCACTCCTCGCTTCCGCTCAGAGGCTGCACACGCTCATACTCACCCCCACCAGAGAGTTGGCTTTCCAGATAGCAGAGCAGTTTGAGGCCCTGGGCTCCAGCATCGGAGTCAAGACCGctgttatcgtTGGAGGAATTGACATGATGTCCCAATCCCTGGTCCTGGCCAAGAAACCTCACATTGTCATTGCCACCCCCGGGCGGTTGATAGACCACTTAGAGAACACAAAAGGCTTCTCACTGCGAGCGCTGAAGTTCCTGGTGATGGATGAGGCAGACCGGATCCTCAACATGGACTTTGAGACTGAGGTAGACAAGATCCTAAAGGTTATTCCCAGAGACCGACGAACGTTCCTCTTCTCTGCTACCATGACCAAAAAGGTCGCCAAGCTGCAGAGAGCAGCTCTGAAGGATCCAGTTAAATGTGCCGTTAACACCAAGTATTCAACAGTAGAAAAACTTCAGCAGTACTACGTCTTCATACCCTCCAAATACAAAGATTGTTACCTGGTGTCCATCATCAACGAGCTGGCTGGGAACTCCTTCATGATCTTCTGCAGTACGTGTAACAATGCCCAGCGTGTGGCGCTGCTGCTCAGGAACTTGGGCATCACTGCCATCCCCCTGCATGGGCAGATGAGTCAGAACAAACGTCTAGGGTCGCTGAACAAGTTCAAGTCTAAGTCTCGCTCTGTGTTGCTGGCGACGGACGTGGCATCAAGAGGACTGGACATTCCACATGTAGACTGTGTTATTAACTACGACATCCCAACTCACTCAAAGGACTACATCCACAGAGTGGGGCGAACCGCCAGAGCAGGACGGTCTGGAAAATCAATCACATTTGTCACACAGTATGATGTGGAGTTGTTCCAGCGAATCGAAACTCTGATTGGCAAGAAGCTGCCTGCCTTCCCCACGCAGGAGGAGGAAGTGATGATGCTGGTGGAGAGAGTGAGCGAGGCGCAGCGATTCGCCAGAATTGAAATGAAGGAACAAGGAGAAAAGAGGAAGCGGcccagaggagaagagggggatgacacaGAGCAGTCCAGCGGTGTGAGGAAGAAAGTAAGAGGTGGCGCTGGTGGTGGCGGAGGGGGgggcggaggaggaggaaaacGTGGTGGAGCAGCATGGAGAGGAGGACGTTAAAGTTGCCAGTAGAGATACACAATACTGTACATGTTGTCAGATACTATGTAATTTTCTTCTTGATAtaaaacatcaacatcatcacAACCACCACATCATGGAGACAGGCTATTTAATTACCGATCACTTGTTCAATTTACTAATCAATATTTCCATTTGTAATAAAATGTTTATGTAAAATCAAGCTTATGTTCAGTGAGTTGTGTTCACAATTTGATAATAAAGCTTGGTCAACATGAATGGAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341830 lncRNA upstream 28776 43386265 ~ 43386631 (+) True G1176657
TU1341809 lncRNA upstream 53180 43359788 ~ 43362227 (+) True G1176637
TU1341768 lncRNA upstream 68010 43341609 ~ 43347397 (+) False LOC110486461
TU1342526 lncRNA downstream 9633 43428092 ~ 43428682 (+) True G1177263
TU1342517 lncRNA downstream 242318 43660777 ~ 43662323 (+) True LOC118938305
TU1342613 lncRNA downstream 358995 43777454 ~ 43778795 (+) True G1177344
TU1342649 lncRNA downstream 405189 43823648 ~ 43871199 (+) False G1177379
TU1342648 lncRNA downstream 414963 43833422 ~ 43868905 (+) False G1177379
XM_021558092.2 mRNA upstream 275 43408733 ~ 43415132 (+) False LOC110486466
XM_036941154.1 mRNA upstream 669 43410705 ~ 43414738 (+) False LOC110486466
XM_036941155.1 mRNA upstream 669 43410764 ~ 43414738 (+) True LOC110486466
XM_021558091.2 mRNA upstream 7464 43406158 ~ 43407943 (+) False LOC110486465
XM_021558089.2 mRNA upstream 13099 43397744 ~ 43402308 (+) False LOC110486464
XM_036941157.1 mRNA downstream 646 43419105 ~ 43494095 (+) False LOC110486468
XM_036941158.1 mRNA downstream 662 43419121 ~ 43481260 (+) False LOC110486468
XM_036941159.1 mRNA downstream 662 43419121 ~ 43481260 (+) False LOC110486468
XM_036941156.1 mRNA downstream 1927 43420386 ~ 43494095 (+) True LOC110486468
XM_036941162.1 mRNA downstream 86969 43505428 ~ 43507937 (+) True LOC110486470
TU1341841 other upstream 7465 43406168 ~ 43407942 (+) True LOC110486465
TU1341800 other upstream 13127 43397749 ~ 43402280 (+) False LOC110486464
TU1341801 other upstream 13127 43397749 ~ 43402280 (+) True LOC110486464
TU1341730 other upstream 150251 43259175 ~ 43265156 (+) False LOC110485182
TU1341549 other upstream 443196 42965493 ~ 42972211 (+) True LOC110486447
TU1343143 other downstream 700419 44118878 ~ 44121922 (+) True G1177750
TU1343210 other downstream 755925 44174384 ~ 44205570 (+) False LOC110486491
TU1343861 other downstream 1249609 44668068 ~ 44668459 (+) True G1178363
TU1343925 other downstream 1441410 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 1501904 44920363 ~ 44926317 (+) True LOC110485188

Expression Profile