RNA id: XM_036941165.1



Basic Information


Item Value
RNA id XM_036941165.1
length 775
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118938297
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43485682 ~ 43487100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCAGCCATATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGAGACACCAGCCAGACAATATCTACAAATTGTCAAGTGTGATCTCACATCTGGGAGACAACATGTATACAGGCCACTacatcagtgatgttttggacAGCCGTGGCAGTGGGTGGCTCTGCCTGGATGACACACATGTCTTGAGGACAGATGAGGCCACTGTGCTGAAGGCGATTTCACAGACTGCCTACATCCTGTTCTATGTCTGCAGGTAAGGCTCTAGGCCACAAATTTGAGAAGAATGTCACAAATGGAGTCAATGACGACAATCAGTCCCTTTCACCTGTAATCCCTCTGTATGTGTTATTTTTCAGACATTGTATGTACATGTAAGATCTCCCTGTCATTTCTCATTGAAGTGGAGCAGGTGAAGGAGACCAGGCCCCTCACTACCAGGAGAAGGATCAGGAGAACCCATCATTAAACTCAGGGAGAGGCACAGCGCTCAGGGACCACCTGGAGTAGCACCTACCACACACCAAGAAACATCAGATTAATCGAATTAGGCTGCCCTACACCACCCTCAACTGCCTTAGACCACCATaaagctgccctagaccaccatcaggctgcccatcaccaccatcaagctgccctagaccaccatcagactgccctacaccaccatcaagctgccctagaccaccatcaagctgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1342810 lncRNA downstream 12539 43472643 ~ 43473143 (-) True G1177509
TU1342808 lncRNA downstream 13441 43471406 ~ 43472241 (-) True G1177507
TU1342498 lncRNA downstream 77311 43407998 ~ 43408371 (-) True G1177237
TU1342422 lncRNA downstream 123414 43354300 ~ 43362268 (-) False G1177175
TU1342414 lncRNA downstream 205042 43280439 ~ 43280640 (-) True G1177170
TU1342815 lncRNA upstream 22979 43510079 ~ 43523551 (-) True G1177513
TU1342847 lncRNA upstream 66275 43553375 ~ 43554655 (-) False LOC118938075
TU1342861 lncRNA upstream 94775 43581875 ~ 43642074 (-) True LOC118938078
TU1342872 lncRNA upstream 122285 43609385 ~ 43624534 (-) True G1177553
TU1342869 lncRNA upstream 127834 43614934 ~ 43647736 (-) True G1177552
XM_021559457.2 mRNA downstream 123443 43355729 ~ 43362239 (-) True LOC110487544
XM_021558087.2 mRNA downstream 132534 43346778 ~ 43353148 (-) True LOC110486463
XM_021558082.2 mRNA downstream 187833 43285756 ~ 43297849 (-) True LOC110486460
XM_036941144.1 mRNA downstream 213628 43265779 ~ 43272054 (-) True LOC110486458
XM_036941143.1 mRNA downstream 214015 43265779 ~ 43271667 (-) False LOC110486458
XR_005035555.1 mRNA upstream 2 43487102 ~ 43489593 (-) True LOC118938302
XR_005035557.1 mRNA upstream 12700 43499800 ~ 43500729 (-) True LOC118938304
XM_036939745.1 mRNA upstream 13714 43500814 ~ 43502295 (-) True LOC118938072
XM_036939746.1 mRNA upstream 28322 43515422 ~ 43518265 (-) True LOC110486469
XM_036939747.1 mRNA upstream 47517 43534617 ~ 43535764 (-) True LOC118938073
TU1342499 other downstream 70579 43414159 ~ 43415103 (-) True G1177238
TU1342421 other downstream 123328 43355719 ~ 43362354 (-) True G1177175
TU1342419 other downstream 123414 43352501 ~ 43362268 (-) False G1177175
TU1342420 other downstream 123414 43355719 ~ 43362268 (-) False G1177175
TU1342276 other downstream 409329 43059430 ~ 43076353 (-) True G1177047
TU1342871 other upstream 114263 43601363 ~ 43616008 (-) False G1177552
TU1343088 other upstream 486439 43973539 ~ 43974057 (-) True G1177709
TU1343092 other upstream 490047 43977147 ~ 43983567 (-) True zgc:158403
TU1343292 other upstream 540212 44027312 ~ 44028985 (-) True epor
TU1343757 other upstream 975854 44462954 ~ 44463226 (-) True G1178281

Expression Profile